FFCP PHASE1:Hg19::chr13:113350755..113350785,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-359bp_to_ENST00000419448_5end | |association_with_transcript=-359bp_to_ENST00000419448_5end | ||
|cluster_id=chr13:113350755..113350785,+ | |||
|coexpression_cluster_id=C541 | |coexpression_cluster_id=C541 | ||
|description=CAGE_peak_1_at_ENST00000419448_5end | |description=CAGE_peak_1_at_ENST00000419448_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:1000415;5.04e-34;2 | |ontology_enrichment_celltype_v019=CL:1000415;5.04e-34;2 | ||
|ontology_enrichment_celltype_v019_2=CL:1000415,5.04e-34,2 | |||
|ontology_enrichment_development_v019=UBERON:0008947;3.10e-10;29!UBERON:0001041;6.23e-10;30 | |ontology_enrichment_development_v019=UBERON:0008947;3.10e-10;29!UBERON:0001041;6.23e-10;30 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1325;8.16e-11;7!DOID:3904;8.16e-11;7 | |ontology_enrichment_disease_v019=DOID:1325;8.16e-11;7!DOID:3904;8.16e-11;7 | ||
|ontology_enrichment_disease_v019_2=DOID:1325,8.16e-11,7;DOID:3904,8.16e-11,7 | |||
|ontology_enrichment_uberon=UBERON:0005153!9.71e-08!37;UBERON:0008947!2.76e-07!38;UBERON:0003258!2.76e-07!38 | |ontology_enrichment_uberon=UBERON:0005153!9.71e-08!37;UBERON:0008947!2.76e-07!38;UBERON:0003258!2.76e-07!38 | ||
|ontology_enrichment_uberon_v019=UBERON:0002171;4.66e-66;1!UBERON:0006518;4.66e-66;1!UBERON:0008949;4.66e-66;1!UBERON:0000101;4.66e-66;1!UBERON:0002167;4.66e-66;1!UBERON:0002110;3.27e-23;3!UBERON:0002048;4.01e-13;22!UBERON:0000117;4.01e-13;22!UBERON:0000171;4.01e-13;22!UBERON:0000170;4.01e-13;22!UBERON:0002294;8.99e-11;7!UBERON:0001173;8.99e-11;7!UBERON:0000065;4.95e-09;44!UBERON:0005178;1.25e-08;34!UBERON:0002224;1.25e-08;34!UBERON:0005181;2.52e-07;35 | |ontology_enrichment_uberon_v019=UBERON:0002171;4.66e-66;1!UBERON:0006518;4.66e-66;1!UBERON:0008949;4.66e-66;1!UBERON:0000101;4.66e-66;1!UBERON:0002167;4.66e-66;1!UBERON:0002110;3.27e-23;3!UBERON:0002048;4.01e-13;22!UBERON:0000117;4.01e-13;22!UBERON:0000171;4.01e-13;22!UBERON:0000170;4.01e-13;22!UBERON:0002294;8.99e-11;7!UBERON:0001173;8.99e-11;7!UBERON:0000065;4.95e-09;44!UBERON:0005178;1.25e-08;34!UBERON:0002224;1.25e-08;34!UBERON:0005181;2.52e-07;35 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002171,4.66e-66,1;UBERON:0006518,4.66e-66,1;UBERON:0008949,4.66e-66,1;UBERON:0000101,4.66e-66,1;UBERON:0002167,4.66e-66,1;UBERON:0002110,3.27e-23,3;UBERON:0006242,3.27e-23,3;UBERON:0002048,4.01e-13,22;UBERON:0000117,4.01e-13,22;UBERON:0000171,4.01e-13,22;UBERON:0000170,4.01e-13,22;UBERON:0005597,4.01e-13,22;UBERON:0000118,4.01e-13,22;UBERON:0005178,6.80e-09,34;UBERON:0002224,6.80e-09,34;UBERON:0002294,1.12e-08,9;UBERON:0001173,1.12e-08,9;UBERON:0004912,1.12e-08,9;UBERON:0005181,1.14e-08,35;UBERON:0005911,2.70e-08,82;UBERON:0005153,2.92e-08,37;UBERON:0008947,4.52e-08,38;UBERON:0003258,4.52e-08,38;UBERON:0005177,6.45e-07,101;UBERON:0005157,1.00e-06,47 | |||
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| ||
|short_description=p1@ENST00000419448 | |short_description=p1@ENST00000419448 | ||
}} | }} |
Latest revision as of 14:41, 24 July 2015
Short description: | p1@ENST00000419448 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000419448_5end |
Coexpression cluster: | C541_bronchogenic_anaplastic_cervical_Hep2_small_testicular_large |
Association with transcript: | -359bp_to_ENST00000419448_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of gall bladder | 5.04e-34 | 2 |
Ontology term | p-value | n |
---|---|---|
lower lobe of right lung | 4.66e-66 | 1 |
right lung lobe | 4.66e-66 | 1 |
lower lobe of lung | 4.66e-66 | 1 |
lobe of lung | 4.66e-66 | 1 |
right lung | 4.66e-66 | 1 |
gallbladder | 3.27e-23 | 3 |
gall bladder primordium | 3.27e-23 | 3 |
lung | 4.01e-13 | 22 |
respiratory tube | 4.01e-13 | 22 |
respiration organ | 4.01e-13 | 22 |
pair of lungs | 4.01e-13 | 22 |
lung primordium | 4.01e-13 | 22 |
lung bud | 4.01e-13 | 22 |
thoracic cavity element | 6.80e-09 | 34 |
thoracic cavity | 6.80e-09 | 34 |
biliary system | 1.12e-08 | 9 |
biliary tree | 1.12e-08 | 9 |
biliary bud | 1.12e-08 | 9 |
thoracic segment organ | 1.14e-08 | 35 |
endo-epithelium | 2.70e-08 | 82 |
epithelial bud | 2.92e-08 | 37 |
respiratory primordium | 4.52e-08 | 38 |
endoderm of foregut | 4.52e-08 | 38 |
trunk region element | 6.45e-07 | 101 |
epithelial fold | 1.00e-06 | 47 |
Ontology term | p-value | n |
---|---|---|
bronchus cancer | 8.16e-11 | 7 |
bronchogenic carcinoma | 8.16e-11 | 7 |