FFCP PHASE1:Hg19::chr13:111137319..111137361,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:111137319..111137361,- to FFCP PHASE1:Hg19::chr13:111137319..111137361,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr13:111137319..111137361,- | |||
|coexpression_cluster_id=C823 | |||
|description=CAGE_peak_at_chr13:111137319..111137361,- | |||
|id=chr13:111137319..111137361,- | |||
|ontology_enrichment_celltype=CL:0000055!2.16e-16!180;CL:0000222!1.02e-13!119;CL:0000183!5.61e-09!59;CL:0000057!1.99e-08!75;CL:0002321!5.34e-08!248;CL:0000220!7.12e-08!246;CL:0000393!1.31e-07!60;CL:0000211!1.31e-07!60;CL:0000213!2.19e-07!57;CL:0000215!2.19e-07!57;CL:0000680!2.22e-07!57;CL:0000056!2.22e-07!57;CL:0000355!2.22e-07!57;CL:1000449!2.79e-07!16;CL:0000187!8.96e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:1000449;4.95e-10;15!CL:1000497;2.61e-08;17!CL:0002518;2.61e-08;17!CL:0002681;1.15e-07;12!CL:0002584;1.15e-07;12!CL:0000115;2.34e-07;36!CL:1000507;6.68e-07;10!CL:1000494;6.68e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.26e-12,121;CL:1000449,5.92e-10,15;CL:0000057,5.88e-09,76;CL:0000115,2.26e-08,36;CL:1000497,3.03e-08,17;CL:0002518,3.03e-08,17;CL:0002681,1.41e-07,12;CL:0002584,1.41e-07,12;CL:0000213,5.71e-07,58;CL:0000215,5.71e-07,58;CL:0002078,6.01e-07,45 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!1.31e-12!118;UBERON:0002049!2.20e-12!79;UBERON:0007798!2.20e-12!79;UBERON:0001009!1.92e-11!113;UBERON:0004535!2.88e-11!110;UBERON:0004872!2.26e-10!84;UBERON:0005256!4.18e-10!143;UBERON:0000055!2.49e-09!69;UBERON:0002385!9.02e-09!63;UBERON:0001015!9.02e-09!63;UBERON:0000383!9.02e-09!63;UBERON:0001134!2.39e-08!61;UBERON:0002036!2.39e-08!61;UBERON:0003082!2.39e-08!61;UBERON:0000490!4.53e-08!138;UBERON:0000468!9.56e-08!659;UBERON:0000119!1.41e-07!312;UBERON:0001981!2.11e-07!60;UBERON:0007500!2.11e-07!60;UBERON:0004537!2.11e-07!60;UBERON:0006965!2.11e-07!60;UBERON:0002100!2.19e-07!216;UBERON:0004211!2.79e-07!16;UBERON:0001285!2.79e-07!16;UBERON:0007684!2.79e-07!16;UBERON:0003220!2.79e-07!16;UBERON:0004208!2.79e-07!16;UBERON:0003103!3.81e-07!69;UBERON:0000483!4.14e-07!309;UBERON:0006555!4.26e-07!17;UBERON:0005103!4.26e-07!17;UBERON:0000083!4.26e-07!17;UBERON:0009201!4.26e-07!17;UBERON:0004819!4.26e-07!17;UBERON:0006553!4.26e-07!17;UBERON:0003074!4.26e-07!17;UBERON:0003060!4.26e-07!17;UBERON:0000080!5.46e-07!18;UBERON:0002120!5.46e-07!18;UBERON:0004875!5.46e-07!18;UBERON:0005721!5.46e-07!18;UBERON:0005754!5.46e-07!18;UBERON:0007297!5.46e-07!18;UBERON:0004290!6.26e-07!70;UBERON:0004876!8.15e-07!20;UBERON:0000353!8.70e-07!17;UBERON:0003887!8.83e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;4.95e-10;15!UBERON:0004819;4.95e-10;15!UBERON:0001285;4.95e-10;15!UBERON:0007684;4.95e-10;15!UBERON:0000353;6.64e-08;15!UBERON:0001225;1.15e-07;12!UBERON:0008987;1.15e-07;12!UBERON:0003914;5.49e-07;74!UBERON:0004211;6.68e-07;10!UBERON:0009773;6.68e-07;10!UBERON:0001231;6.68e-07;10!UBERON:0004810;6.68e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,2.50e-14,117;UBERON:0002049,7.83e-13,78;UBERON:0007798,7.83e-13,78;UBERON:0001009,1.81e-12,112;UBERON:0004535,4.79e-12,109;UBERON:0004211,5.92e-10,15;UBERON:0009773,5.92e-10,15;UBERON:0001231,5.92e-10,15;UBERON:0001285,5.92e-10,15;UBERON:0007684,5.92e-10,15;UBERON:0004208,5.92e-10,15;UBERON:0004872,6.24e-10,83;UBERON:0003104,6.59e-10,160;UBERON:0009142,6.59e-10,160;UBERON:0000055,7.23e-10,68;UBERON:0006555,4.83e-09,16;UBERON:0004819,4.83e-09,16;UBERON:0007503,2.71e-08,78;UBERON:0000353,8.04e-08,15;UBERON:0001225,1.41e-07,12;UBERON:0008987,1.41e-07,12;UBERON:0002385,3.50e-07,64;UBERON:0001015,3.50e-07,64;UBERON:0000383,3.50e-07,64;UBERON:0007500,4.87e-07,59;UBERON:0001981,4.87e-07,59;UBERON:0004537,4.87e-07,59;UBERON:0006965,4.87e-07,59;UBERON:0005256,4.91e-07,122;UBERON:0002100,5.68e-07,199;UBERON:0001134,5.84e-07,62;UBERON:0002036,5.84e-07,62;UBERON:0003082,5.84e-07,62;UBERON:0003103,6.72e-07,68 | |||
|phase1_expression=1.99846217197612,4.28201047781966,2.11431606143957,3.00219895059391,8.49226079411847,6.97870819280295,17.7309914717817,0.631719873426831,3.65659879479774,1.72013755551056,4.88460817580699,0.218441372130172,0.791300934685361,0.247532705920093,1.65698687863958,2.6893005858071,2.41077811209591,2.92124036154949,3.90346239032406,0.738726348460727,1.02000345622126,1.25381888591235,1.71741592278634,0.821246550437305,2.38531015230125,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68280343881454,5.11450247374121,1.0843174571537,0.50133791063589,2.02785126545153,0,0.973269740605272,0.567208902984407,0.886917589850256,2.28370442802128,0.851363990735132,0,0.370784442784429,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0.56530794192401,2.09749718104953,4.67700671298115,1.04497483268405,2.32575083252396,1.42306505074684,4.01664735317604,14.5018554159293,1.52054421143703,25.1383919274615,1.83831540172934,12.9622711661082,1.07159673940896,0,0.112611480483322,0,0.949265659568129,2.01521918323448,0,0,0.872188104285069,5.4666914686485,2.65924074495618,1.19168262731897,5.44989579422746,0,1.68203280042692,1.06748995729705,16.0333906471154,1.24484414159907,5.25371621071783,3.59616186849609,3.93529311876822,10.94734256512,0.234321431833797,0.624320153660641,0,0.149448680551801,0,0.161872944368132,0.140450806702248,0,0.122834317311768,0.103325781175765,0,4.20353779773547,0,5.03032699271367,0.168336113954066,0.500474079487857,0,0,1.22595118319608,1.50238058906597,4.99101605904093,5.38168907066586,3.20336083227851,1.48352330811693,3.00091096084402,0.412210116953756,6.1833729610951,1.30281799432113,3.03797398034279,1.85130309806277,6.05841058185875,0.828449087780694,0.161646056818812,5.32514388774922,1.10827308050404,2.54340888465731,0.386521706326594,0.272746120590835,0,0.609868530647977,0.397589304964456,0.580969714347592,0.414644220061482,0,0,0,1.92972281457866,0,0,0,0.236613600079688,0.505754070234305,0.241011029883482,0.441175890929576,0.217879444092406,0,0.539325232640658,0,0.38474715694639,1.4763109092493,4.20725321410337,4.115740113314,2.94017422771084,0,0,0.590789906681404,0,0,2.05881372358231,0.658501712451753,1.1240175325762,0.301586917234893,0.740707561268237,0,0,4.3299402607582,1.15930404975077,1.87853910777315,14.4366447761074,8.33373922637899,12.1762657430143,0,0,0,0,0,0,0.335964256397719,0.141775097242386,1.34337784054272,0,0.383382679165211,0,0,0,0,0,0.507983154337352,0.763976851116555,0,0,1.95372236136315,2.10240140490742,0.571652865261156,1.00917975910825,0.87192013766656,4.5469737208989,1.80980402060889,0,5.917119267892,8.77595784730073,5.2003718455683,0.257207374262142,0,0.532844358032199,14.1548213721566,2.71310802695722,2.46972101034231,3.25736184293735,7.10783897485092,6.33561498346743,3.61727252471503,1.74306691720059,2.39935178836937,0,0,0,6.23024624278115,4.59447743336456,0,1.44781306667579,2.05476322550383,0.716243852959582,0,0,0,0,1.01637849688985,1.30139853857622,1.54657762555539,1.00509759200609,1.91381625495949,0,0,0,1.71768088406796,1.00034104211935,0.813795071099207,13.1021642764408,11.2410262942212,11.1968714674094,3.16281820480326,0.300946099727719,2.27407504055985,2.0694614258501,3.32112799267718,0.553107505625109,0.781952530212746,16.2514960694075,13.3825935286234,0,0,0,0,0,0.604780586659361,1.48864684691266,1.2276957863045,1.40330047216537,1.53766979106841,1.02341449813341,6.4341568457443,5.93672265779964,0,0.887808626565635,0.328508624055237,1.55776328755086,0.464841513839837,0,3.40860999515584,0,1.14814448164607,2.73136752010076,1.31124414959424,3.60959690325929,8.39467174438121,2.35304930753057,5.84556898613043,13.616160127181,2.27466768141793,3.57196781080683,1.94324324491925,4.62681758070868,5.41892875087706,5.51858751240339,1.01950509218015,0,1.11937377361089,0,0,1.28225062558195,2.29610251989794,0.650756789328606,3.50339439602256,0,0,0,0,0,0.48335359146061,0.924291702687866,1.84204409671355,1.37836572484531,0.537101224341368,1.30515024522806,0.767039646744908,1.06838442776085,0.826424576804891,1.72971060628596,0.255225424989168,0.4046311234222,0,3.77774816196768,0,0.616067160352178,0,0,0.55597265731176,0.143124886741991,1.48863347743867,5.37845022021834,2.66882271493355,0.511795582622668,0.855877976067841,0,1.56989728039846,2.15846949099978,3.0199073270966,0.942499218765491,0,1.58510321173008,1.26377536871694,2.43816869544795,4.6305563029944,4.22600587027022,2.8664981395677,0.424216295861138,1.13008116620243,0,3.98063385144732,0,0,1.9676842561399,1.21746226177622,0.6196469961995,4.7888252430481,1.43411352204052,4.61770492761669,0.7133421029625,0.354761064070598,0.211107635297664,0,0,1.39973888097993,0.0962221127255121,0,0,3.01260162485693,0.86101074534246,0,1.7737206141467,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3185736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| ||
|short_description=p@chr13:111137319..111137361,- | |||
}} | }} |
Latest revision as of 14:32, 24 July 2015
Short description: | p@chr13:111137319..111137361, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:111137319..111137361, - |
Coexpression cluster: | C823_Fibroblast_Endothelial_hepatic_Pericytes_umbilical_Adipocyte_Lymphatic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.26e-12 | 121 |
epithelial cell of nephron | 5.92e-10 | 15 |
fibroblast | 5.88e-09 | 76 |
endothelial cell | 2.26e-08 | 36 |
kidney cell | 3.03e-08 | 17 |
kidney epithelial cell | 3.03e-08 | 17 |
kidney cortical cell | 1.41e-07 | 12 |
renal cortical epithelial cell | 1.41e-07 | 12 |
lining cell | 5.71e-07 | 58 |
barrier cell | 5.71e-07 | 58 |
meso-epithelial cell | 6.01e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 2.50e-14 | 117 |
vasculature | 7.83e-13 | 78 |
vascular system | 7.83e-13 | 78 |
circulatory system | 1.81e-12 | 112 |
cardiovascular system | 4.79e-12 | 109 |
nephron epithelium | 5.92e-10 | 15 |
renal tubule | 5.92e-10 | 15 |
nephron tubule | 5.92e-10 | 15 |
nephron | 5.92e-10 | 15 |
uriniferous tubule | 5.92e-10 | 15 |
nephrogenic mesenchyme | 5.92e-10 | 15 |
splanchnic layer of lateral plate mesoderm | 6.24e-10 | 83 |
mesenchyme | 6.59e-10 | 160 |
entire embryonic mesenchyme | 6.59e-10 | 160 |
vessel | 7.23e-10 | 68 |
excretory tube | 4.83e-09 | 16 |
kidney epithelium | 4.83e-09 | 16 |
epithelial vesicle | 2.71e-08 | 78 |
parenchyma | 8.04e-08 | 15 |
cortex of kidney | 1.41e-07 | 12 |
renal parenchyma | 1.41e-07 | 12 |
muscle tissue | 3.50e-07 | 64 |
musculature | 3.50e-07 | 64 |
musculature of body | 3.50e-07 | 64 |
epithelial tube open at both ends | 4.87e-07 | 59 |
blood vessel | 4.87e-07 | 59 |
blood vasculature | 4.87e-07 | 59 |
vascular cord | 4.87e-07 | 59 |
trunk mesenchyme | 4.91e-07 | 122 |
trunk | 5.68e-07 | 199 |
skeletal muscle tissue | 5.84e-07 | 62 |
striated muscle tissue | 5.84e-07 | 62 |
myotome | 5.84e-07 | 62 |
compound organ | 6.72e-07 | 68 |