FFCP PHASE1:Hg19::chr12:54567359..54567401,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr12:54567359..54567401,-
|short_description=p@chr12:54567359..54567401,-
|description=CAGE_peak_at_chr12:54567359..54567401,-
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:54567359..54567401,- | |||
|coexpression_cluster_id=C89 | |||
|description=CAGE_peak_at_chr12:54567359..54567401,- | |||
|id=chr12:54567359..54567401,- | |||
|ontology_enrichment_celltype=CL:0000242!1.20e-09!2 | |||
|ontology_enrichment_celltype_v019=CL:0000123;5.15e-21;2!CL:0002535;5.15e-21;2!CL:0000242;5.15e-21;2!CL:0000095;2.36e-09;17!CL:0000333;3.10e-09;5!CL:0000312;3.10e-09;5!CL:0000240;6.55e-08;6!CL:0000311;6.55e-08;6!CL:0000079;6.55e-08;6!CL:0000237;6.55e-08;6!CL:0002319;7.24e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,4.66e-21,2;CL:0000242,6.96e-21,2;CL:0000095,2.56e-09,17;CL:0000123,2.56e-09,17;CL:0000312,3.49e-09,5;CL:0000333,4.45e-09,41;CL:0000240,7.25e-08,6;CL:0000311,7.25e-08,6;CL:0000079,7.25e-08,6;CL:0000237,7.25e-08,6;CL:0000036,7.25e-08,6;CL:0000357,7.25e-08,6;CL:0000114,7.25e-08,6;CL:0002319,7.67e-07,25 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.71e-14;3!CL:0000357;6.55e-08;6!CL:0000114;6.55e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;2.53e-11;4!DOID:4362;3.10e-09;5!DOID:169;6.55e-08;6!DOID:1325;5.08e-07;7!DOID:3904;5.08e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,2.53e-11,4;DOID:4362,2.97e-09,5;DOID:169,5.92e-08,6;DOID:1325,5.08e-07,7;DOID:3904,5.08e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0000073!7.09e-16!94;UBERON:0001016!7.09e-16!94;UBERON:0001049!2.13e-15!57;UBERON:0005068!2.13e-15!57;UBERON:0006241!2.13e-15!57;UBERON:0007135!2.13e-15!57;UBERON:0002619!2.84e-15!22;UBERON:0001869!1.30e-14!32;UBERON:0005743!1.65e-14!86;UBERON:0002346!6.31e-14!90;UBERON:0001017!7.48e-14!82;UBERON:0002020!1.06e-13!34;UBERON:0003528!1.06e-13!34;UBERON:0001950!1.07e-13!20;UBERON:0001893!1.25e-13!34;UBERON:0000955!1.41e-13!69;UBERON:0006238!1.41e-13!69;UBERON:0000956!2.76e-13!25;UBERON:0000203!2.76e-13!25;UBERON:0003075!3.64e-13!86;UBERON:0007284!3.64e-13!86;UBERON:0002780!5.10e-13!41;UBERON:0001890!5.10e-13!41;UBERON:0006240!5.10e-13!41;UBERON:0002616!7.00e-13!59;UBERON:0003080!1.19e-12!42;UBERON:0002791!7.25e-12!33;UBERON:0003056!6.73e-11!61;UBERON:0007023!9.89e-10!115;UBERON:0000924!5.01e-09!173;UBERON:0006601!5.01e-09!173;UBERON:0004121!2.00e-08!169;UBERON:0001871!5.77e-08!7;UBERON:0000033!9.03e-08!123;UBERON:0000153!3.22e-07!129;UBERON:0007811!3.22e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0006955;5.15e-21;2!UBERON:0004801;5.15e-21;2!UBERON:0000966;3.10e-09;5!UBERON:0000013;3.10e-09;5!UBERON:0002410;3.10e-09;5!UBERON:0005388;3.10e-09;5!UBERON:0001802;3.10e-09;5!UBERON:0000002;6.55e-08;6!UBERON:0001560;6.55e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,4.66e-21,2;UBERON:0004801,4.66e-21,2;UBERON:0000013,2.74e-09,5;UBERON:0002410,2.74e-09,5;UBERON:0000002,6.34e-08,6;UBERON:0001560,6.34e-08,6;UBERON:0000966,6.78e-08,6;UBERON:0005388,6.78e-08,6;UBERON:0001802,6.78e-08,6 | |||
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| ||
|short_description=p@chr12:54567359..54567401,- | |||
}} | }} |
Latest revision as of 09:59, 24 July 2015
Short description: | p@chr12:54567359..54567401, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:54567359..54567401, - |
Coexpression cluster: | C89_small_retinoblastoma_medulloblastoma_iPS_acantholytic_eye_bronchogenic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 4.66e-21 | 2 |
Merkel cell | 6.96e-21 | 2 |
neuron associated cell | 2.56e-09 | 17 |
neuron associated cell (sensu Vertebrata) | 2.56e-09 | 17 |
keratinocyte | 3.49e-09 | 5 |
migratory neural crest cell | 4.45e-09 | 41 |
stratified squamous epithelial cell | 7.25e-08 | 6 |
keratin accumulating cell | 7.25e-08 | 6 |
stratified epithelial cell | 7.25e-08 | 6 |
keratinizing barrier epithelial cell | 7.25e-08 | 6 |
epithelial fate stem cell | 7.25e-08 | 6 |
stratified epithelial stem cell | 7.25e-08 | 6 |
surface ectodermal cell | 7.25e-08 | 6 |
neural cell | 7.67e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 4.66e-21 | 2 |
cervix epithelium | 4.66e-21 | 2 |
sympathetic nervous system | 2.74e-09 | 5 |
autonomic nervous system | 2.74e-09 | 5 |
uterine cervix | 6.34e-08 | 6 |
neck of organ | 6.34e-08 | 6 |
retina | 6.78e-08 | 6 |
photoreceptor array | 6.78e-08 | 6 |
posterior segment of eyeball | 6.78e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.53e-11 | 4 |
cervical cancer | 2.97e-09 | 5 |
neuroendocrine tumor | 5.92e-08 | 6 |
bronchus cancer | 5.08e-07 | 7 |
bronchogenic carcinoma | 5.08e-07 | 7 |