FFCP PHASE1:Hg19::chr12:52908395..52908409,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:52908395..52908409,- | |||
|coexpression_cluster_id=C405 | |coexpression_cluster_id=C405 | ||
|description=CAGE_peak_at_chr12:52908395..52908409,- | |description=CAGE_peak_at_chr12:52908395..52908409,- | ||
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|ontology_enrichment_celltype=CL:0002076!2.97e-23!43;CL:0000223!8.14e-17!59;CL:0002251!1.45e-15!21;CL:0000066!1.34e-13!254;CL:0002159!8.51e-12!13;CL:0002368!2.61e-11!13;CL:0000244!8.74e-11!4;CL:0000731!8.74e-11!4;CL:0002621!2.93e-09!3;CL:0002623!8.13e-09!3;CL:0000076!9.33e-09!62;CL:0000622!1.11e-08!5;CL:0002328!4.28e-08!3;CL:0000240!9.41e-08!6;CL:0000311!9.41e-08!6;CL:0000079!9.41e-08!6;CL:0000237!9.41e-08!6;CL:0000036!9.41e-08!6;CL:0000357!9.41e-08!6;CL:0000114!9.41e-08!6;CL:0000154!3.21e-07!6 | |ontology_enrichment_celltype=CL:0002076!2.97e-23!43;CL:0000223!8.14e-17!59;CL:0002251!1.45e-15!21;CL:0000066!1.34e-13!254;CL:0002159!8.51e-12!13;CL:0002368!2.61e-11!13;CL:0000244!8.74e-11!4;CL:0000731!8.74e-11!4;CL:0002621!2.93e-09!3;CL:0002623!8.13e-09!3;CL:0000076!9.33e-09!62;CL:0000622!1.11e-08!5;CL:0002328!4.28e-08!3;CL:0000240!9.41e-08!6;CL:0000311!9.41e-08!6;CL:0000079!9.41e-08!6;CL:0000237!9.41e-08!6;CL:0000036!9.41e-08!6;CL:0000357!9.41e-08!6;CL:0000114!9.41e-08!6;CL:0000154!3.21e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002251;5.76e-24;20!CL:0002076;5.90e-21;42!CL:0002621;1.03e-16;3!CL:0002623;6.63e-16;3!CL:0000240;1.95e-14;6!CL:0000311;1.95e-14;6!CL:0000079;1.95e-14;6!CL:0000237;1.95e-14;6!CL:0002159;6.74e-13;14!CL:0000244;8.66e-12;4!CL:0000731;8.66e-12;4!CL:0000575;1.06e-11;2!CL:0000312;4.02e-10;5!CL:0000622;9.67e-10;5!CL:0000154;3.44e-08;6!CL:0002252;7.90e-07;1!CL:0002336;9.55e-07;1!CL:0002261;9.55e-07;1!CL:0002170;9.55e-07;1 | |ontology_enrichment_celltype_v019=CL:0002251;5.76e-24;20!CL:0002076;5.90e-21;42!CL:0002621;1.03e-16;3!CL:0002623;6.63e-16;3!CL:0000240;1.95e-14;6!CL:0000311;1.95e-14;6!CL:0000079;1.95e-14;6!CL:0000237;1.95e-14;6!CL:0002159;6.74e-13;14!CL:0000244;8.66e-12;4!CL:0000731;8.66e-12;4!CL:0000575;1.06e-11;2!CL:0000312;4.02e-10;5!CL:0000622;9.67e-10;5!CL:0000154;3.44e-08;6!CL:0002252;7.90e-07;1!CL:0002336;9.55e-07;1!CL:0002261;9.55e-07;1!CL:0002170;9.55e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0002076,5.16e-24,42;CL:0002251,5.84e-24,20;CL:0002621,9.83e-17,3;CL:0000223,1.77e-16,58;CL:0002623,7.34e-16,3;CL:0000240,2.06e-14,6;CL:0000311,2.06e-14,6;CL:0000079,2.06e-14,6;CL:0000237,2.06e-14,6;CL:0000036,2.06e-14,6;CL:0000357,2.06e-14,6;CL:0000114,2.06e-14,6;CL:0002159,7.11e-13,14;CL:0000066,7.92e-13,253;CL:0000244,7.32e-12,4;CL:0000731,7.32e-12,4;CL:0000575,9.57e-12,2;CL:0000312,4.14e-10,5;CL:0000622,1.03e-09,5;CL:0000154,3.61e-08,6;CL:0002252,7.90e-07,1;CL:0002336,9.81e-07,1;CL:0002261,9.81e-07,1;CL:0002170,9.81e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000357;1.95e-14;6!CL:0000114;1.95e-14;6!CL:0000223;4.35e-10;58 | |ontology_enrichment_development_v019=CL:0000357;1.95e-14;6!CL:0000114;1.95e-14;6!CL:0000223;4.35e-10;58 | ||
|ontology_enrichment_disease=DOID:1749!1.18e-15!14 | |ontology_enrichment_disease=DOID:1749!1.18e-15!14 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000161!3.44e-16!35;UBERON:0000166!3.68e-15!21;UBERON:0001004!1.18e-13!72;UBERON:0000165!9.68e-13!28;UBERON:0000930!9.68e-13!28;UBERON:0000365!1.65e-12!5;UBERON:0003102!4.18e-12!95;UBERON:0004119!7.39e-12!169;UBERON:0000925!7.39e-12!169;UBERON:0006595!7.39e-12!169;UBERON:0005910!2.35e-10!6;UBERON:0001444!7.99e-10!48;UBERON:0001949!2.93e-09!3;UBERON:0003408!1.72e-08!10;UBERON:0003729!1.85e-08!5;UBERON:0000974!3.16e-08!10;UBERON:0004815!4.28e-08!3;UBERON:0002031!4.28e-08!3;UBERON:0001044!3.48e-07!6;UBERON:0003293!3.48e-07!6;UBERON:0003294!3.48e-07!6;UBERON:0010047!3.48e-07!6;UBERON:0000167!3.48e-07!6;UBERON:0000344!9.74e-07!12 | |ontology_enrichment_uberon=UBERON:0000161!3.44e-16!35;UBERON:0000166!3.68e-15!21;UBERON:0001004!1.18e-13!72;UBERON:0000165!9.68e-13!28;UBERON:0000930!9.68e-13!28;UBERON:0000365!1.65e-12!5;UBERON:0003102!4.18e-12!95;UBERON:0004119!7.39e-12!169;UBERON:0000925!7.39e-12!169;UBERON:0006595!7.39e-12!169;UBERON:0005910!2.35e-10!6;UBERON:0001444!7.99e-10!48;UBERON:0001949!2.93e-09!3;UBERON:0003408!1.72e-08!10;UBERON:0003729!1.85e-08!5;UBERON:0000974!3.16e-08!10;UBERON:0004815!4.28e-08!3;UBERON:0002031!4.28e-08!3;UBERON:0001044!3.48e-07!6;UBERON:0003293!3.48e-07!6;UBERON:0003294!3.48e-07!6;UBERON:0010047!3.48e-07!6;UBERON:0000167!3.48e-07!6;UBERON:0000344!9.74e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.03e-16;3!UBERON:0000165;2.46e-16;28!UBERON:0000161;5.61e-16;19!UBERON:0000166;5.61e-16;19!UBERON:0000486;5.91e-15;12!UBERON:0003729;8.86e-14;13!UBERON:0000365;1.58e-09;5!UBERON:0007811;3.98e-09;52!UBERON:0001041;4.46e-09;14!UBERON:0000344;9.64e-09;20!UBERON:0001044;3.44e-08;6!UBERON:0003293;3.44e-08;6!UBERON:0003294;3.44e-08;6!UBERON:0010047;3.44e-08;6!UBERON:0003408;3.44e-08;6!UBERON:0000167;3.44e-08;6!UBERON:0001043;4.34e-08;3!UBERON:0005910;5.16e-08;6!UBERON:0000033;9.05e-08;50!UBERON:0000974;9.90e-08;6!UBERON:0001555;1.73e-07;54!UBERON:0000153;1.97e-07;54!UBERON:0003929;2.06e-07;7!UBERON:0001444;2.46e-07;48 | |ontology_enrichment_uberon_v019=UBERON:0001949;1.03e-16;3!UBERON:0000165;2.46e-16;28!UBERON:0000161;5.61e-16;19!UBERON:0000166;5.61e-16;19!UBERON:0000486;5.91e-15;12!UBERON:0003729;8.86e-14;13!UBERON:0000365;1.58e-09;5!UBERON:0007811;3.98e-09;52!UBERON:0001041;4.46e-09;14!UBERON:0000344;9.64e-09;20!UBERON:0001044;3.44e-08;6!UBERON:0003293;3.44e-08;6!UBERON:0003294;3.44e-08;6!UBERON:0010047;3.44e-08;6!UBERON:0003408;3.44e-08;6!UBERON:0000167;3.44e-08;6!UBERON:0001043;4.34e-08;3!UBERON:0005910;5.16e-08;6!UBERON:0000033;9.05e-08;50!UBERON:0000974;9.90e-08;6!UBERON:0001555;1.73e-07;54!UBERON:0000153;1.97e-07;54!UBERON:0003929;2.06e-07;7!UBERON:0001444;2.46e-07;48 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000166,4.20e-17,22;UBERON:0001949,9.83e-17,3;UBERON:0000165,1.06e-15,29;UBERON:0000930,1.06e-15,29;UBERON:0003729,8.57e-14,13;UBERON:0000153,5.04e-13,62;UBERON:0007811,5.04e-13,62;UBERON:0000033,1.27e-12,56;UBERON:0003102,1.30e-12,99;UBERON:0001444,1.31e-12,49;UBERON:0000161,3.96e-12,36;UBERON:0000365,1.38e-09,5;UBERON:0004119,3.70e-09,160;UBERON:0000925,3.70e-09,160;UBERON:0006595,3.70e-09,160;UBERON:0001004,7.92e-09,74;UBERON:0000344,9.44e-09,20;UBERON:0001044,3.61e-08,6;UBERON:0003293,3.61e-08,6;UBERON:0003294,3.61e-08,6;UBERON:0010047,3.61e-08,6;UBERON:0000167,3.61e-08,6;UBERON:0001043,4.20e-08,3;UBERON:0009143,4.20e-08,3;UBERON:0005910,4.62e-08,6 | |||
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| ||
|short_description=p@chr12:52908395..52908409,- | |short_description=p@chr12:52908395..52908409,- | ||
}} | }} |
Latest revision as of 09:34, 24 July 2015
Short description: | p@chr12:52908395..52908409, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52908395..52908409, - |
Coexpression cluster: | C405_Keratinocyte_Mammary_Sebocyte_tongue_Corneal_Mallassezderived_Gingival |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 5.16e-24 | 42 |
epithelial cell of alimentary canal | 5.84e-24 | 20 |
gingival epithelial cell | 9.83e-17 | 3 |
endodermal cell | 1.77e-16 | 58 |
acinar cell of salivary gland | 7.34e-16 | 3 |
stratified squamous epithelial cell | 2.06e-14 | 6 |
keratin accumulating cell | 2.06e-14 | 6 |
stratified epithelial cell | 2.06e-14 | 6 |
keratinizing barrier epithelial cell | 2.06e-14 | 6 |
epithelial fate stem cell | 2.06e-14 | 6 |
stratified epithelial stem cell | 2.06e-14 | 6 |
surface ectodermal cell | 2.06e-14 | 6 |
general ecto-epithelial cell | 7.11e-13 | 14 |
epithelial cell | 7.92e-13 | 253 |
transitional epithelial cell | 7.32e-12 | 4 |
urothelial cell | 7.32e-12 | 4 |
corneal epithelial cell | 9.57e-12 | 2 |
keratinocyte | 4.14e-10 | 5 |
acinar cell | 1.03e-09 | 5 |
protein secreting cell | 3.61e-08 | 6 |
epithelial cell of esophagus | 7.90e-07 | 1 |
buccal mucosa cell | 9.81e-07 | 1 |
endothelial cell of viscerocranial mucosa | 9.81e-07 | 1 |
keratinized cell of the oral mucosa | 9.81e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
oral opening | 4.20e-17 | 22 |
gingival epithelium | 9.83e-17 | 3 |
mouth | 1.06e-15 | 29 |
stomodeum | 1.06e-15 | 29 |
mouth mucosa | 8.57e-14 | 13 |
anterior region of body | 5.04e-13 | 62 |
craniocervical region | 5.04e-13 | 62 |
head | 1.27e-12 | 56 |
surface structure | 1.30e-12 | 99 |
subdivision of head | 1.31e-12 | 49 |
orifice | 3.96e-12 | 36 |
urothelium | 1.38e-09 | 5 |
endoderm-derived structure | 3.70e-09 | 160 |
endoderm | 3.70e-09 | 160 |
presumptive endoderm | 3.70e-09 | 160 |
respiratory system | 7.92e-09 | 74 |
mucosa | 9.44e-09 | 20 |
saliva-secreting gland | 3.61e-08 | 6 |
gland of oral region | 3.61e-08 | 6 |
gland of foregut | 3.61e-08 | 6 |
oral gland | 3.61e-08 | 6 |
oral cavity | 3.61e-08 | 6 |
esophagus | 4.20e-08 | 3 |
esophageal region | 4.20e-08 | 3 |
transitional epithelium | 4.62e-08 | 6 |