FFCP PHASE1:Hg19::chr11:86334270..86334280,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:86334270..86334280,+ | |||
|coexpression_cluster_id=C139 | |||
|description=CAGE_peak_at_chr11:86334270..86334280,+ | |description=CAGE_peak_at_chr11:86334270..86334280,+ | ||
|id=chr11:86334270..86334280,+ | |id=chr11:86334270..86334280,+ | ||
|ontology_enrichment_celltype=CL:0002159!1.27e-09!13;CL:0002621!2.46e-09!3;CL:0002368!4.43e-09!13;CL:0002328!9.83e-09!3;CL:0000349!1.12e-08!3;CL:0002577!1.12e-08!3;CL:0002076!1.21e-08!43 | |ontology_enrichment_celltype=CL:0002159!1.27e-09!13;CL:0002621!2.46e-09!3;CL:0002368!4.43e-09!13;CL:0002328!9.83e-09!3;CL:0000349!1.12e-08!3;CL:0002577!1.12e-08!3;CL:0002076!1.21e-08!43 | ||
|ontology_enrichment_celltype_v019=CL:0002621;9.08e-16;3!CL:0002166;1.53e-15;3!CL:0002159;6.96e-13;14!CL:0002537;5.69e-10;5!CL:0000312;6.80e-10;5!CL:0000349;1.36e-09;19!CL:0000240;2.17e-08;6!CL:0000311;2.17e-08;6!CL:0000079;2.17e-08;6!CL:0000237;2.17e-08;6!CL:0002076;8.84e-07;42!CL:0001014;9.01e-07;2!CL:0002536;9.01e-07;2!CL:0001016;9.01e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002621,6.26e-16,3;CL:0002166,1.53e-15,3;CL:0002159,7.19e-13,14;CL:0002537,5.95e-10,5;CL:0000312,7.11e-10,5;CL:0000349,1.49e-09,19;CL:0000240,2.25e-08,6;CL:0000311,2.25e-08,6;CL:0000079,2.25e-08,6;CL:0000237,2.25e-08,6;CL:0000036,2.25e-08,6;CL:0000357,2.25e-08,6;CL:0000114,2.25e-08,6;CL:0001014,9.02e-07,2;CL:0001016,9.02e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000357;2.17e-08;6!CL:0000114;2.17e-08;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!4.64e-11!14;UBERON:0000158!4.64e-11!14;UBERON:0000200!3.33e-10!6;UBERON:0001950!7.05e-10!20;UBERON:0001949!2.46e-09!3;UBERON:0002619!7.65e-09!22;UBERON:0004815!9.83e-09!3;UBERON:0002031!9.83e-09!3;UBERON:0001869!3.20e-08!32;UBERON:0002771!4.77e-08!3;UBERON:0001893!1.32e-07!34;UBERON:0000956!1.36e-07!25;UBERON:0000203!1.36e-07!25;UBERON:0000478!2.49e-07!24;UBERON:0002780!3.75e-07!41;UBERON:0001890!3.75e-07!41;UBERON:0006240!3.75e-07!41;UBERON:0003080!6.38e-07!42 | |ontology_enrichment_uberon=UBERON:0005631!4.64e-11!14;UBERON:0000158!4.64e-11!14;UBERON:0000200!3.33e-10!6;UBERON:0001950!7.05e-10!20;UBERON:0001949!2.46e-09!3;UBERON:0002619!7.65e-09!22;UBERON:0004815!9.83e-09!3;UBERON:0002031!9.83e-09!3;UBERON:0001869!3.20e-08!32;UBERON:0002771!4.77e-08!3;UBERON:0001893!1.32e-07!34;UBERON:0000956!1.36e-07!25;UBERON:0000203!1.36e-07!25;UBERON:0000478!2.49e-07!24;UBERON:0002780!3.75e-07!41;UBERON:0001890!3.75e-07!41;UBERON:0006240!3.75e-07!41;UBERON:0003080!6.38e-07!42 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;9.08e-16;3!UBERON:0000305;6.09e-15;7!UBERON:0001708;6.73e-12;4!UBERON:0008895;6.73e-12;4!UBERON:0005631;1.24e-10;10!UBERON:0000158;1.24e-10;10!UBERON:0011159;1.06e-09;5!UBERON:0000478;1.25e-07;24!UBERON:0003929;2.86e-07;7!UBERON:0001905;9.01e-07;2!UBERON:0002757;9.01e-07;2!UBERON:0010134;9.01e-07;2!UBERON:0005408;9.01e-07;2!UBERON:0001899;9.01e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,6.26e-16,3;UBERON:0000305,7.73e-15,7;UBERON:0004871,4.65e-13,8;UBERON:0005631,6.97e-13,14;UBERON:0000158,6.97e-13,14;UBERON:0001708,6.73e-12,4;UBERON:0008895,6.73e-12,4;UBERON:0011159,1.06e-09,5;UBERON:0010188,3.13e-08,6;UBERON:0002539,3.13e-08,6;UBERON:0008816,3.13e-08,6;UBERON:0000478,1.34e-07,24 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0.436882744260345,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0.103052529238439,0.257640540045629,0,0,0,0.252433774244115,0.0920498986422993,0,0,0,0,0.773043412653187,1.90922284413584,2.58124135850103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.48751427043128,0,1.3068766413512,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17587489739202,1.70130116690864,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,1.66435439510497,0.30239029332968,0,1.99500565274481,0,0,0,0,0,0,0,0,0,0,0,3.00759705454927,0.184161977871793,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0.384380134730212,7.01869918720213,0.10115778085555,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,0,0,0.86101074534246,0,0,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14870036263921,0,2.15012491469462,0,0,0,0,0,0,0,0,16.8743326128555,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0.379864775735272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,1.5476039091159,0.364497339948148,0,0,0,0,0,0.191915197319445,0,0,1.017074150619,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.876336514945499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.621748802331122,0.147855149989634,0,0,0,0,0,0,0,0,0,0.181848659202559,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0.358177682162975,0,0,0,0.964570191354574,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,0.41023272848151,0,0,0.807378228159255,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0.270150338473579,0,0.206686796501184,0.19024743058172,0,0,0.496211178389294,0,0,1.07140367175657,0,0,0,0,0,0,0,0.197318320688547,0,0,0,0,0,0,0.647782773655864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0.865253124247578,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0.436882744260345,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0.103052529238439,0.257640540045629,0,0,0,0.252433774244115,0.0920498986422993,0,0,0,0,0.773043412653187,1.90922284413584,2.58124135850103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.48751427043128,0,1.3068766413512,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17587489739202,1.70130116690864,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,1.66435439510497,0.30239029332968,0,1.99500565274481,0,0,0,0,0,0,0,0,0,0,0,3.00759705454927,0.184161977871793,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0.384380134730212,7.01869918720213,0.10115778085555,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,0,0,0.86101074534246,0,0,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14870036263921,0,2.15012491469462,0,0,0,0,0,0,0,0,16.8743326128555,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0.379864775735272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,1.5476039091159,0.364497339948148,0,0,0,0,0,0.191915197319445,0,0,1.017074150619,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.876336514945499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.621748802331122,0.147855149989634,0,0,0,0,0,0,0,0,0,0.181848659202559,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0.358177682162975,0,0,0,0.964570191354574,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,0.41023272848151,0,0,0.807378228159255,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0.270150338473579,0,0.206686796501184,0.19024743058172,0,0,0.496211178389294,0,0,1.07140367175657,0,0,0,0,0,0,0,0.197318320688547,0,0,0,0,0,0,0.647782773655864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0.865253124247578,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr11:86334270..86334280,+ | |short_description=p@chr11:86334270..86334280,+ | ||
}} | }} |
Latest revision as of 03:17, 24 July 2015
Short description: | p@chr11:86334270..86334280, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:86334270..86334280, + |
Coexpression cluster: | C139_astrocytoma_skin_salivary_gall_serous_Mallassezderived_renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 6.26e-16 | 3 |
epithelial cell of Malassez | 1.53e-15 | 3 |
general ecto-epithelial cell | 7.19e-13 | 14 |
amnion mesenchymal stem cell | 5.95e-10 | 5 |
keratinocyte | 7.11e-10 | 5 |
extraembryonic cell | 1.49e-09 | 19 |
stratified squamous epithelial cell | 2.25e-08 | 6 |
keratin accumulating cell | 2.25e-08 | 6 |
stratified epithelial cell | 2.25e-08 | 6 |
keratinizing barrier epithelial cell | 2.25e-08 | 6 |
epithelial fate stem cell | 2.25e-08 | 6 |
stratified epithelial stem cell | 2.25e-08 | 6 |
surface ectodermal cell | 2.25e-08 | 6 |
CD1a-positive Langerhans cell | 9.02e-07 | 2 |
immature CD1a-positive Langerhans cell | 9.02e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 6.26e-16 | 3 |
amnion | 7.73e-15 | 7 |
somatic layer of lateral plate mesoderm | 4.65e-13 | 8 |
extraembryonic membrane | 6.97e-13 | 14 |
membranous layer | 6.97e-13 | 14 |
jaw skeleton | 6.73e-12 | 4 |
splanchnocranium | 6.73e-12 | 4 |
primary subdivision of cranial skeletal system | 1.06e-09 | 5 |
protuberance | 3.13e-08 | 6 |
pharyngeal arch | 3.13e-08 | 6 |
embryonic head | 3.13e-08 | 6 |
extraembryonic structure | 1.34e-07 | 24 |