FFCP PHASE1:Hg19::chr11:5166455..5166462,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:5166455..5166462,+ | |||
|coexpression_cluster_id=C3160 | |||
|description=CAGE_peak_at_chr11:5166455..5166462,+ | |description=CAGE_peak_at_chr11:5166455..5166462,+ | ||
|id=chr11:5166455..5166462,+ | |id=chr11:5166455..5166462,+ | ||
|ontology_enrichment_celltype=CL:0002150!1.91e-17!3;CL:0000861!1.91e-17!3;CL:0000785!6.49e-12!2;CL:0000955!6.49e-12!2;CL:0000818!6.49e-12!2;CL:0000954!6.49e-12!2;CL:0000816!6.49e-12!2;CL:0000817!3.13e-08!3;CL:0002553!2.09e-07!1;CL:0000319!4.78e-07!1;CL:0000819!6.76e-07!1 | |ontology_enrichment_celltype=CL:0002150!1.91e-17!3;CL:0000861!1.91e-17!3;CL:0000785!6.49e-12!2;CL:0000955!6.49e-12!2;CL:0000818!6.49e-12!2;CL:0000954!6.49e-12!2;CL:0000816!6.49e-12!2;CL:0000817!3.13e-08!3;CL:0002553!2.09e-07!1;CL:0000319!4.78e-07!1;CL:0000819!6.76e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0002553;1.84e-34;1!CL:1000415;1.07e-17;2!CL:0000322;2.89e-12;3!CL:0000082;5.73e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,1.84e-34,1;CL:1000415,9.07e-18,2;CL:0000322,3.24e-12,3;CL:0000082,5.94e-08,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease_v019=DOID:3910;1.07e-17;2!DOID:1324;7.75e-10;15!DOID:0050615;2.77e-09;16!DOID:3908;7.01e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,1.27e-17,2;DOID:1324,8.10e-10,15;DOID:0050615,2.89e-09,16;DOID:3908,7.49e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000997!6.38e-07!1;UBERON:0005056!6.38e-07!1;UBERON:0000473!7.12e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;1.07e-17;2!UBERON:0002173;1.07e-17;2!UBERON:0002186;1.07e-17;2!UBERON:0002110;2.89e-12;3!UBERON:0004821;2.89e-12;3!UBERON:0007499;2.89e-12;3!UBERON:0003215;2.89e-12;3!UBERON:0010368;2.89e-12;3!UBERON:0009911;2.89e-12;3!UBERON:0002299;2.89e-12;3!UBERON:0006524;2.89e-12;3!UBERON:0008874;2.89e-12;3!UBERON:0002169;2.89e-12;3!UBERON:0004894;2.89e-12;3!UBERON:0009856;1.57e-09;4!UBERON:0004802;5.73e-08;19!UBERON:0000115;5.73e-08;19!UBERON:0002048;5.24e-07;22!UBERON:0004807;5.24e-07;22!UBERON:0000117;5.24e-07;22!UBERON:0000171;5.24e-07;22!UBERON:0000170;5.24e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,1.27e-17,2;UBERON:0002173,1.27e-17,2;UBERON:0002186,1.27e-17,2;UBERON:0002110,2.59e-12,3;UBERON:0006242,2.59e-12,3;UBERON:0004821,3.24e-12,3;UBERON:0003215,3.24e-12,3;UBERON:0010368,3.24e-12,3;UBERON:0009911,3.24e-12,3;UBERON:0002299,3.24e-12,3;UBERON:0006524,3.24e-12,3;UBERON:0008874,3.24e-12,3;UBERON:0002169,3.24e-12,3;UBERON:0004894,3.24e-12,3;UBERON:0004802,5.94e-08,19;UBERON:0000115,5.94e-08,19;UBERON:0002048,5.40e-07,22;UBERON:0000117,5.40e-07,22;UBERON:0000171,5.40e-07,22;UBERON:0000170,5.40e-07,22;UBERON:0005597,5.40e-07,22;UBERON:0000118,5.40e-07,22 | |||
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|short_description=p@chr11:5166455..5166462,+ | |short_description=p@chr11:5166455..5166462,+ | ||
}} | }} |
Latest revision as of 22:47, 23 July 2015
Short description: | p@chr11:5166455..5166462, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:5166455..5166462, + |
Coexpression cluster: | C3160_nonsmall_embryonic_cord_testis_bronchioalveolar_gall_adult |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 1.84e-34 | 1 |
epithelial cell of gall bladder | 9.07e-18 | 2 |
pneumocyte | 3.24e-12 | 3 |
epithelial cell of lung | 5.94e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 1.27e-17 | 2 |
alveolar duct | 1.27e-17 | 2 |
bronchiole | 1.27e-17 | 2 |
gallbladder | 2.59e-12 | 3 |
gall bladder primordium | 2.59e-12 | 3 |
pulmonary alveolus epithelium | 3.24e-12 | 3 |
alveolus | 3.24e-12 | 3 |
pulmonary lobule | 3.24e-12 | 3 |
lobule | 3.24e-12 | 3 |
alveolus of lung | 3.24e-12 | 3 |
alveolar system | 3.24e-12 | 3 |
pulmonary acinus | 3.24e-12 | 3 |
alveolar sac | 3.24e-12 | 3 |
alveolar wall | 3.24e-12 | 3 |
respiratory tract epithelium | 5.94e-08 | 19 |
lung epithelium | 5.94e-08 | 19 |
lung | 5.40e-07 | 22 |
respiratory tube | 5.40e-07 | 22 |
respiration organ | 5.40e-07 | 22 |
pair of lungs | 5.40e-07 | 22 |
lung primordium | 5.40e-07 | 22 |
lung bud | 5.40e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 1.27e-17 | 2 |
lung cancer | 8.10e-10 | 15 |
respiratory system cancer | 2.89e-09 | 16 |
non-small cell lung carcinoma | 7.49e-08 | 5 |