FFCP PHASE1:Hg19::chr11:46341922..46341957,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr11:46341922..46341957,+ | |||
|coexpression_cluster_id=C882 | |||
|description=CAGE_peak_at_chr11:46341922..46341957,+ | |||
|id=chr11:46341922..46341957,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.87e-36!180;CL:0000057!2.20e-23!75;CL:0000183!1.69e-14!59;CL:0000680!2.66e-14!57;CL:0000056!2.66e-14!57;CL:0000355!2.66e-14!57;CL:0000187!7.59e-14!54;CL:0000393!9.17e-13!60;CL:0000211!9.17e-13!60;CL:0000192!1.99e-12!42;CL:0000514!1.99e-12!42;CL:0002620!7.31e-10!23;CL:0000359!5.99e-09!32;CL:0000048!7.39e-08!430;CL:0000222!1.22e-07!119;CL:0000723!2.36e-07!436;CL:0000034!4.62e-07!444;CL:0000144!4.63e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000134;1.14e-10;55!CL:0000057;1.16e-09;73!CL:0000192;2.08e-09;43!CL:0000048;3.22e-09;58!CL:0002620;6.31e-09;23!CL:0002320;1.12e-08;188!CL:0000723;1.76e-08;61!CL:0000499;3.94e-08;28!CL:0002334;6.56e-08;12!CL:0002570;8.20e-08;8!CL:0000359;5.26e-07;32!CL:0000187;5.57e-07;55!CL:0000034;6.84e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.31e-24,76;CL:0000048,1.32e-17,427;CL:0000723,9.37e-17,433;CL:0000034,1.16e-15,441;CL:0000187,4.75e-12,55;CL:0000192,1.22e-11,43;CL:0000514,1.22e-11,43;CL:0002320,5.84e-11,361;CL:0000680,6.98e-11,58;CL:0000056,6.98e-11,58;CL:0000355,6.98e-11,58;CL:0000393,7.60e-10,61;CL:0000211,7.60e-10,61;CL:0000134,1.12e-09,354;CL:0002620,7.66e-09,23;CL:0002334,4.79e-08,12;CL:0000499,5.24e-08,28;CL:0002570,7.58e-08,8;CL:0000219,3.00e-07,386;CL:0000359,4.16e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;2.08e-09;43!CL:0000355;6.76e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;3.33e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.32e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!7.44e-16!83;UBERON:0002329!7.44e-16!83;UBERON:0003077!7.44e-16!83;UBERON:0003059!7.44e-16!83;UBERON:0007282!7.44e-16!83;UBERON:0009618!7.44e-16!83;UBERON:0007285!7.44e-16!83;UBERON:0004290!6.03e-14!70;UBERON:0002385!1.52e-13!63;UBERON:0001015!1.52e-13!63;UBERON:0000383!1.52e-13!63;UBERON:0001134!2.46e-13!61;UBERON:0002036!2.46e-13!61;UBERON:0003082!2.46e-13!61;UBERON:0005256!1.49e-12!143;UBERON:0000486!7.23e-12!82;UBERON:0003102!4.07e-09!95;UBERON:0000475!1.03e-08!365;UBERON:0004872!2.09e-08!84;UBERON:0002199!3.68e-08!45;UBERON:0002416!3.68e-08!45;UBERON:0000490!5.33e-08!138;UBERON:0002100!9.71e-08!216;UBERON:0001637!4.59e-07!42;UBERON:0003509!4.59e-07!42;UBERON:0004572!4.59e-07!42;UBERON:0000481!9.10e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.35e-08;198!UBERON:0001013;7.13e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,4.67e-11,371;UBERON:0001134,3.07e-10,62;UBERON:0002036,3.07e-10,62;UBERON:0003082,3.07e-10,62;UBERON:0007524,5.17e-10,73;UBERON:0002329,9.61e-10,71;UBERON:0003059,9.61e-10,71;UBERON:0007282,9.61e-10,71;UBERON:0004290,9.61e-10,71;UBERON:0009618,9.61e-10,71;UBERON:0002385,1.34e-09,64;UBERON:0001015,1.34e-09,64;UBERON:0000383,1.34e-09,64;UBERON:0003077,1.86e-09,72;UBERON:0007285,1.86e-09,72;UBERON:0002199,1.65e-08,46;UBERON:0002416,1.65e-08,46;UBERON:0007503,1.76e-08,78;UBERON:0005256,6.01e-08,122;UBERON:0003102,6.40e-08,99;UBERON:0000486,6.66e-08,83;UBERON:0003104,5.97e-07,160;UBERON:0009142,5.97e-07,160;UBERON:0001013,6.61e-07,14;UBERON:0002097,8.25e-07,41 | |||
|phase1_expression=1.99846217197612,2.14100523890983,1.12763523276777,0,2.23480547213644,1.74467704820074,5.06599756336621,1.26343974685366,0.522371256399677,0.982935746006035,0.697801167972428,1.31064823278103,0.527533956456907,1.48519623552056,0.331397375727916,0.672325146451775,3.01347264011988,2.92124036154949,2.43966399395253,1.47745269692145,0.612002073732759,1.88072832886853,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,1.02290049474824,3.61439152384566,0.50133791063589,3.0417768981773,4.7717156823066,1.45990461090791,0.0945348171640679,0.886917589850256,0.351339142772504,0.261958150995425,0,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0.347140501607594,0,0.419499436209906,0,0.208994966536811,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,2.27934920996244,0.397227542439656,2.86836620748814,1.77334191099179,0.560677600142307,2.1349799145941,5.42668606517752,0.311211035399766,0.67355336034844,0.163461903113459,2.72443369760877,0,2.57753575017176,0.624320153660641,0,1.04614076386261,0.587172493218824,0.485618833104395,0.561803226808994,2.65400422631361,0.737005903870608,3.71972812232756,1.18800285728205,3.95627086845691,11.8320977051943,7.90479955997862,0.505008341862199,1.25118519871964,2.49357703935765,2.19488810440419,3.98434134538726,1.35214253015937,0.907457465280168,3.58779271377724,4.27114777637135,3.60284231971255,2.70081986475962,4.53431128649131,3.60696756063881,3.53622027030021,2.36286865137773,4.38466523225394,3.28163906517349,3.22174645248048,7.59736467048416,7.4552014428489,3.22406714328449,3.89989362314122,0,0,0,0.243947412259191,0.397589304964456,0.232387885739037,0.310983165046111,0,0,0,3.85944562915731,2.76269842704961,2.78620756819187,1.44375896333917,0,0.168584690078102,0,0,0.217879444092406,0,0,0,0,0,1.40241773803446,2.4694440679884,2.94017422771084,0,0,0.590789906681404,0,1.22988438543114,1.71567810298526,0.109750285408626,0,0,0,3.25808305310325,3.11980435583874,0,1.04337364477569,0.70445216541493,0.144366447761074,0,0,0,0,0,0,0,0,0.16798212819886,0.708875486211932,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,1.00917975910825,1.30788020649984,1.1734125731352,1.29271715757778,10.7296933755565,1.690605505112,2.39344304926383,5.2003718455683,1.80045161983499,0,2.93064396917709,6.14805372730035,12.4802969240032,4.11620168390384,2.93162565864362,2.48774364119782,0.791951872933429,0.602878754119172,0.871533458600294,0.399891964728228,0,0,0,3.35474797688216,2.29723871668228,0,0.723906533337896,0.821905290201534,0.537182889719687,0,0,0,0,0.508189248444927,0,0.773288812777695,0.167516265334349,0,0,0,0,2.4538298343828,2.50085260529839,0.813795071099207,4.99130067673937,9.8135943838439,5.67728694122165,3.27995961979597,2.10662269809403,0,2.0694614258501,4.64957918974806,0.921845842708516,2.34585759063824,2.34961388955289,2.40200396667599,0,0,0,0.909382714338778,4.99306318531491,4.83824469327489,1.73675465473144,1.53461973288062,3.92924132206303,3.20347873139252,2.04682899626681,3.53878626515936,0,4.00945203886904,2.30830242907065,1.56041596426237,4.67328986265259,1.74315567689939,0.846016147141356,0.200506470303285,0,5.0518357192427,8.5582848963157,6.03172308813351,0,0.0770153371044148,0,0,0,0,0,0.431831832204279,0,0.541892875087706,1.50506932156456,0,0,0.223874754722178,0,0,0,0.328014645699706,1.30151357865721,0.206082023295445,4.67004270573551,3.05285149706176,0.574265537996172,0,6.42735719376638,2.41676795730305,0.770243085573222,0.307007349452259,0.551346289938122,2.25582514223375,2.17525040871343,0.511359764496605,6.49933860221183,0,0,0,0,7.43752878875657,10.3888074454111,2.0911118104818,0.924100740528266,1.59691809095107,0,2.03856641014312,0,0.744316738719335,0.316379424718726,2.2875623270859,5.11795582622668,1.28381696410176,2.54562598340749,3.92474320099615,0.539617372749944,3.56898138656871,1.29593642580255,0.606547444719948,0,0.421258456238981,3.41343617362713,3.65570234446927,1.05650146756755,5.86949619054339,7.07027159768564,1.13008116620243,0.551365343546124,3.3171948762061,0.438450885253763,3.47265320560013,0,2.02910376962704,1.54911749049875,2.25356482025793,4.15892921391749,1.76848273823618,0.7133421029625,2.12856638442359,1.47775344708365,1.97576935775941,3.03578539012572,3.14941248220485,0,0,0,0.188287601553558,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0.222617410045812,0,0,0.398495976502139,0.276283915531148,0,0.613612095012929,0.492339221844278,2.48831670129446,0,0.358042349351218,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0.262379999988587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,1.82307289355202,0,0,0,0,0.274792780205587,0,0,0,0,0,0.392125068635479,0.6712863479033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| |||
|short_description=p@chr11:46341922..46341957,+ | |||
}} |
Latest revision as of 22:25, 23 July 2015
Short description: | p@chr11:46341922..46341957, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:46341922..46341957, + |
Coexpression cluster: | C882_Olfactory_Mesenchymal_Smooth_tenocyte_Osteoblast_Prostate_Fibroblast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.31e-24 | 76 |
multi fate stem cell | 1.32e-17 | 427 |
somatic stem cell | 9.37e-17 | 433 |
stem cell | 1.16e-15 | 441 |
muscle cell | 4.75e-12 | 55 |
smooth muscle cell | 1.22e-11 | 43 |
smooth muscle myoblast | 1.22e-11 | 43 |
connective tissue cell | 5.84e-11 | 361 |
muscle precursor cell | 6.98e-11 | 58 |
myoblast | 6.98e-11 | 58 |
multi-potent skeletal muscle stem cell | 6.98e-11 | 58 |
electrically responsive cell | 7.60e-10 | 61 |
electrically active cell | 7.60e-10 | 61 |
mesenchymal cell | 1.12e-09 | 354 |
skin fibroblast | 7.66e-09 | 23 |
preadipocyte | 4.79e-08 | 12 |
stromal cell | 5.24e-08 | 28 |
mesenchymal stem cell of adipose | 7.58e-08 | 8 |
motile cell | 3.00e-07 | 386 |
vascular associated smooth muscle cell | 4.16e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 4.67e-11 | 371 |
skeletal muscle tissue | 3.07e-10 | 62 |
striated muscle tissue | 3.07e-10 | 62 |
myotome | 3.07e-10 | 62 |
dense mesenchyme tissue | 5.17e-10 | 73 |
somite | 9.61e-10 | 71 |
presomitic mesoderm | 9.61e-10 | 71 |
presumptive segmental plate | 9.61e-10 | 71 |
dermomyotome | 9.61e-10 | 71 |
trunk paraxial mesoderm | 9.61e-10 | 71 |
muscle tissue | 1.34e-09 | 64 |
musculature | 1.34e-09 | 64 |
musculature of body | 1.34e-09 | 64 |
paraxial mesoderm | 1.86e-09 | 72 |
presumptive paraxial mesoderm | 1.86e-09 | 72 |
integument | 1.65e-08 | 46 |
integumental system | 1.65e-08 | 46 |
epithelial vesicle | 1.76e-08 | 78 |
trunk mesenchyme | 6.01e-08 | 122 |
surface structure | 6.40e-08 | 99 |
multilaminar epithelium | 6.66e-08 | 83 |
mesenchyme | 5.97e-07 | 160 |
entire embryonic mesenchyme | 5.97e-07 | 160 |
adipose tissue | 6.61e-07 | 14 |
skin of body | 8.25e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.32e-09 | 14 |