FFCP PHASE1:Hg19::chr11:35325239..35325266,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:35325239..35325266,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_at_chr11:35325239..35325266,- | |description=CAGE_peak_at_chr11:35325239..35325266,- | ||
|id=chr11:35325239..35325266,- | |id=chr11:35325239..35325266,- | ||
|ontology_enrichment_celltype=CL:0002057!5.43e-77!42;CL:0000860!2.22e-71!45;CL:0002009!8.16e-61!65;CL:0002194!5.32e-59!63;CL:0000576!5.32e-59!63;CL:0000040!5.32e-59!63;CL:0000559!5.32e-59!63;CL:0000557!4.34e-55!71;CL:0000766!2.13e-54!76;CL:0000839!2.02e-52!70;CL:0000763!7.93e-37!112;CL:0000049!7.93e-37!112;CL:0000738!6.46e-34!140;CL:0002087!3.95e-32!119;CL:0002031!2.19e-28!124;CL:0000037!4.86e-26!172;CL:0000566!4.86e-26!172;CL:0000988!3.83e-24!182;CL:0002032!1.89e-22!165;CL:0000837!1.89e-22!165;CL:0000134!3.20e-11!358;CL:0002320!7.86e-11!365;CL:0000840!1.39e-10!5;CL:0001029!1.39e-10!5;CL:0000219!1.87e-09!390;CL:0000048!3.32e-09!430;CL:0000723!6.00e-09!436;CL:0000451!1.02e-08!10;CL:0000034!1.29e-08!444;CL:0000990!4.40e-07!8 | |ontology_enrichment_celltype=CL:0002057!5.43e-77!42;CL:0000860!2.22e-71!45;CL:0002009!8.16e-61!65;CL:0002194!5.32e-59!63;CL:0000576!5.32e-59!63;CL:0000040!5.32e-59!63;CL:0000559!5.32e-59!63;CL:0000557!4.34e-55!71;CL:0000766!2.13e-54!76;CL:0000839!2.02e-52!70;CL:0000763!7.93e-37!112;CL:0000049!7.93e-37!112;CL:0000738!6.46e-34!140;CL:0002087!3.95e-32!119;CL:0002031!2.19e-28!124;CL:0000037!4.86e-26!172;CL:0000566!4.86e-26!172;CL:0000988!3.83e-24!182;CL:0002032!1.89e-22!165;CL:0000837!1.89e-22!165;CL:0000134!3.20e-11!358;CL:0002320!7.86e-11!365;CL:0000840!1.39e-10!5;CL:0001029!1.39e-10!5;CL:0000219!1.87e-09!390;CL:0000048!3.32e-09!430;CL:0000723!6.00e-09!436;CL:0000451!1.02e-08!10;CL:0000034!1.29e-08!444;CL:0000990!4.40e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.58e-71;33!CL:0002057;1.58e-71;33!CL:0000473;9.39e-49;39!CL:0000234;9.39e-49;39!CL:0000576;3.78e-43;48!CL:0000766;4.32e-26;69!CL:0002087;1.91e-16;104!CL:0002393;9.21e-13;6!CL:0002397;9.21e-13;6!CL:0000763;6.93e-12;100!CL:0000738;2.15e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.49e-84,42;CL:0002057,4.49e-84,42;CL:0000473,3.53e-73,48;CL:0000234,3.53e-73,48;CL:0002194,6.46e-58,59;CL:0000576,6.46e-58,59;CL:0000040,6.46e-58,59;CL:0000559,6.46e-58,59;CL:0002009,6.03e-56,61;CL:0000839,1.56e-51,66;CL:0000557,9.94e-51,67;CL:0000766,4.91e-47,72;CL:0002087,2.06e-31,115;CL:0000763,2.01e-30,108;CL:0000049,2.01e-30,108;CL:0002031,4.47e-27,120;CL:0000738,4.45e-26,136;CL:0000037,1.73e-20,168;CL:0002032,2.28e-19,161;CL:0000837,2.28e-19,161;CL:0000988,2.82e-19,177;CL:0000134,7.16e-09,354;CL:0002393,8.30e-09,9;CL:0002397,8.30e-09,9;CL:0002320,1.26e-08,361;CL:0000219,9.21e-08,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.13e-54;42!UBERON:0005425;1.83e-09;1!CL:0000049;5.97e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.02e-51!80;UBERON:0001474!3.71e-47!86;UBERON:0002390!5.83e-44!102;UBERON:0003061!5.83e-44!102;UBERON:0002193!2.50e-39!112;UBERON:0004765!4.90e-39!101;UBERON:0001434!4.90e-39!101;UBERON:0002405!2.36e-33!115;UBERON:0002204!1.44e-23!167;UBERON:0003081!1.76e-16!216;UBERON:0002384!2.68e-10!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.83e-09;1!UBERON:0001785;1.83e-09;1!UBERON:0002464;1.83e-09;1!UBERON:0004904;1.83e-09;1!UBERON:0001021;1.83e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.00e-44,76;UBERON:0001474,5.58e-41,82;UBERON:0002390,2.23e-37,98;UBERON:0003061,2.23e-37,98;UBERON:0004765,4.31e-37,90;UBERON:0002405,8.37e-36,93;UBERON:0002193,1.21e-33,108;UBERON:0001434,4.28e-33,100;UBERON:0002204,1.49e-18,167;UBERON:0003081,2.26e-16,203;UBERON:0000941,1.62e-09,1;UBERON:0001785,1.62e-09,1;UBERON:0002464,1.62e-09,1;UBERON:0004904,1.62e-09,1;UBERON:0001021,1.62e-09,1;UBERON:0003902,1.62e-09,1;UBERON:0005425,1.62e-09,1;UBERON:0000926,2.77e-09,315;UBERON:0004120,2.77e-09,315;UBERON:0006603,2.77e-09,315;UBERON:0002384,2.72e-08,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.767658796194425,0,0,0,0,0,0,0,1.66198622559563,1.60435557976113,1.73608696572681,0,0,0,0.290796477559129,0,0.242584061187816,0.232429036905685,0,0,4.60307827715441,0.768482119587302,13.4794871036494,7.58440497620561,1.29096936716765,4.06279459783025,0.188242339542605,0,1.12361742222542,9.48860066349798,3.20929027076094,8.31138263538754,0.329851300186716,0.398927315243264,1.27867425159808,3.77272010217159,2.26954089876456,6.85104473895132,1.25624332628372,0,3.25783267057675,1.21079900526674,5.15588690382591,20.2535927962166,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.649094787309367,0.174129737299267,0,0.238490624305342,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.862856803274467,2.24127871387233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449947783103001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0.919036730290385,1.31149052283922,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.767658796194425,0,0,0,0,0,0,0,1.66198622559563,1.60435557976113,1.73608696572681,0,0,0,0.290796477559129,0,0.242584061187816,0.232429036905685,0,0,4.60307827715441,0.768482119587302,13.4794871036494,7.58440497620561,1.29096936716765,4.06279459783025,0.188242339542605,0,1.12361742222542,9.48860066349798,3.20929027076094,8.31138263538754,0.329851300186716,0.398927315243264,1.27867425159808,3.77272010217159,2.26954089876456,6.85104473895132,1.25624332628372,0,3.25783267057675,1.21079900526674,5.15588690382591,20.2535927962166,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.649094787309367,0.174129737299267,0,0.238490624305342,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.862856803274467,2.24127871387233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449947783103001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0.919036730290385,1.31149052283922,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr11:35325239..35325266,- | |short_description=p@chr11:35325239..35325266,- | ||
}} | }} |
Latest revision as of 21:56, 23 July 2015
Short description: | p@chr11:35325239..35325266, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:35325239..35325266, - |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.49e-84 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.49e-84 | 42 |
defensive cell | 3.53e-73 | 48 |
phagocyte | 3.53e-73 | 48 |
monopoietic cell | 6.46e-58 | 59 |
monocyte | 6.46e-58 | 59 |
monoblast | 6.46e-58 | 59 |
promonocyte | 6.46e-58 | 59 |
macrophage dendritic cell progenitor | 6.03e-56 | 61 |
myeloid lineage restricted progenitor cell | 1.56e-51 | 66 |
granulocyte monocyte progenitor cell | 9.94e-51 | 67 |
myeloid leukocyte | 4.91e-47 | 72 |
nongranular leukocyte | 2.06e-31 | 115 |
myeloid cell | 2.01e-30 | 108 |
common myeloid progenitor | 2.01e-30 | 108 |
hematopoietic lineage restricted progenitor cell | 4.47e-27 | 120 |
leukocyte | 4.45e-26 | 136 |
hematopoietic stem cell | 1.73e-20 | 168 |
hematopoietic oligopotent progenitor cell | 2.28e-19 | 161 |
hematopoietic multipotent progenitor cell | 2.28e-19 | 161 |
hematopoietic cell | 2.82e-19 | 177 |
mesenchymal cell | 7.16e-09 | 354 |
intermediate monocyte | 8.30e-09 | 9 |
CD14-positive, CD16-positive monocyte | 8.30e-09 | 9 |
connective tissue cell | 1.26e-08 | 361 |
motile cell | 9.21e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.00e-44 | 76 |
bone element | 5.58e-41 | 82 |
hematopoietic system | 2.23e-37 | 98 |
blood island | 2.23e-37 | 98 |
skeletal element | 4.31e-37 | 90 |
immune system | 8.37e-36 | 93 |
hemolymphoid system | 1.21e-33 | 108 |
skeletal system | 4.28e-33 | 100 |
musculoskeletal system | 1.49e-18 | 167 |
lateral plate mesoderm | 2.26e-16 | 203 |
cranial nerve II | 1.62e-09 | 1 |
cranial nerve | 1.62e-09 | 1 |
nerve trunk | 1.62e-09 | 1 |
nerve connecting eye with brain | 1.62e-09 | 1 |
nerve | 1.62e-09 | 1 |
retinal neural layer | 1.62e-09 | 1 |
presumptive neural retina | 1.62e-09 | 1 |
mesoderm | 2.77e-09 | 315 |
mesoderm-derived structure | 2.77e-09 | 315 |
presumptive mesoderm | 2.77e-09 | 315 |
connective tissue | 2.72e-08 | 371 |