FFCP PHASE1:Hg19::chr11:123612483..123612494,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:123612483..123612494,+ | |||
|description=CAGE_peak_at_chr11:123612483..123612494,+ | |description=CAGE_peak_at_chr11:123612483..123612494,+ | ||
|id=chr11:123612483..123612494,+ | |id=chr11:123612483..123612494,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000540;6.35e-10;6!CL:0000404;6.35e-10;6!CL:0000815;6.14e-08;2!CL:0000792;6.14e-08;2!CL:0002262;6.14e-08;2!CL:1000398;6.14e-08;2!CL:0002677;6.14e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,7.42e-10,6;CL:0000031,7.42e-10,6;CL:0000404,7.42e-10,6;CL:0000815,5.02e-08,2;CL:0000792,5.02e-08,2;CL:0002677,5.02e-08,2;CL:0002262,5.74e-08,2;CL:1000398,5.74e-08,2;CL:0000047,1.31e-07,8 | |||
|ontology_enrichment_development_v019=UBERON:0005425;1.40e-14;1!CL:0000031;6.35e-10;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!8.80e-25!32;UBERON:0001893!1.42e-24!34;UBERON:0001049!4.56e-24!57;UBERON:0005068!4.56e-24!57;UBERON:0006241!4.56e-24!57;UBERON:0007135!4.56e-24!57;UBERON:0002791!1.60e-23!33;UBERON:0002780!1.64e-23!41;UBERON:0001890!1.64e-23!41;UBERON:0006240!1.64e-23!41;UBERON:0001017!8.23e-23!82;UBERON:0002616!8.79e-23!59;UBERON:0003080!1.09e-22!42;UBERON:0002020!2.62e-22!34;UBERON:0003528!2.62e-22!34;UBERON:0005743!3.89e-22!86;UBERON:0000073!5.74e-22!94;UBERON:0001016!5.74e-22!94;UBERON:0000955!1.03e-21!69;UBERON:0006238!1.03e-21!69;UBERON:0002346!1.02e-20!90;UBERON:0003075!1.74e-20!86;UBERON:0007284!1.74e-20!86;UBERON:0000956!6.71e-20!25;UBERON:0000203!6.71e-20!25;UBERON:0001950!1.21e-19!20;UBERON:0002619!2.92e-19!22;UBERON:0003056!1.48e-18!61;UBERON:0000033!9.94e-14!123;UBERON:0000153!1.46e-13!129;UBERON:0007811!1.46e-13!129;UBERON:0000924!2.00e-13!173;UBERON:0006601!2.00e-13!173;UBERON:0004121!4.82e-13!169;UBERON:0000200!2.80e-08!6;UBERON:0000025!4.70e-08!194;UBERON:0001871!6.61e-08!7;UBERON:0007023!3.56e-07!115;UBERON:0001872!9.35e-07!5 | |ontology_enrichment_uberon=UBERON:0001869!8.80e-25!32;UBERON:0001893!1.42e-24!34;UBERON:0001049!4.56e-24!57;UBERON:0005068!4.56e-24!57;UBERON:0006241!4.56e-24!57;UBERON:0007135!4.56e-24!57;UBERON:0002791!1.60e-23!33;UBERON:0002780!1.64e-23!41;UBERON:0001890!1.64e-23!41;UBERON:0006240!1.64e-23!41;UBERON:0001017!8.23e-23!82;UBERON:0002616!8.79e-23!59;UBERON:0003080!1.09e-22!42;UBERON:0002020!2.62e-22!34;UBERON:0003528!2.62e-22!34;UBERON:0005743!3.89e-22!86;UBERON:0000073!5.74e-22!94;UBERON:0001016!5.74e-22!94;UBERON:0000955!1.03e-21!69;UBERON:0006238!1.03e-21!69;UBERON:0002346!1.02e-20!90;UBERON:0003075!1.74e-20!86;UBERON:0007284!1.74e-20!86;UBERON:0000956!6.71e-20!25;UBERON:0000203!6.71e-20!25;UBERON:0001950!1.21e-19!20;UBERON:0002619!2.92e-19!22;UBERON:0003056!1.48e-18!61;UBERON:0000033!9.94e-14!123;UBERON:0000153!1.46e-13!129;UBERON:0007811!1.46e-13!129;UBERON:0000924!2.00e-13!173;UBERON:0006601!2.00e-13!173;UBERON:0004121!4.82e-13!169;UBERON:0000200!2.80e-08!6;UBERON:0000025!4.70e-08!194;UBERON:0001871!6.61e-08!7;UBERON:0007023!3.56e-07!115;UBERON:0001872!9.35e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0002902;1.40e-14;1!UBERON:0000941;1.40e-14;1!UBERON:0001785;1.40e-14;1!UBERON:0002464;1.40e-14;1!UBERON:0004904;1.40e-14;1!UBERON:0001021;1.40e-14;1!UBERON:0009899;1.40e-14;1!UBERON:0001950;1.94e-10;20!UBERON:0002619;1.49e-09;22!UBERON:0003513;1.65e-08;7!UBERON:0000956;1.78e-08;25!UBERON:0000203;1.78e-08;25!UBERON:0001876;3.68e-08;2!UBERON:0003714;6.14e-08;2!UBERON:0001281;6.14e-08;2!UBERON:0005162;6.14e-08;2!UBERON:0000122;6.14e-08;2!UBERON:0003497;6.14e-08;2!UBERON:0003909;6.14e-08;2!UBERON:0003835;6.14e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.07e-14,1;UBERON:0001785,1.07e-14,1;UBERON:0002464,1.07e-14,1;UBERON:0004904,1.07e-14,1;UBERON:0001021,1.07e-14,1;UBERON:0003902,1.07e-14,1;UBERON:0005425,1.07e-14,1;UBERON:0002902,1.61e-14,1;UBERON:0009899,1.61e-14,1;UBERON:0001950,2.06e-10,20;UBERON:0002619,1.58e-09,22;UBERON:0001016,1.66e-08,89;UBERON:0003513,1.85e-08,7;UBERON:0000956,1.87e-08,25;UBERON:0000203,1.87e-08,25;UBERON:0001876,3.56e-08,2;UBERON:0003714,5.37e-08,2;UBERON:0005162,5.37e-08,2;UBERON:0000122,5.37e-08,2;UBERON:0001281,5.74e-08,2;UBERON:0003497,5.74e-08,2;UBERON:0003909,5.74e-08,2;UBERON:0003835,5.74e-08,2;UBERON:0001017,2.56e-07,81 | |||
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| ||
|short_description=p@chr11:123612483..123612494,+ | |short_description=p@chr11:123612483..123612494,+ | ||
}} | }} |
Latest revision as of 19:28, 23 July 2015
Short description: | p@chr11:123612483..123612494, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:123612483..123612494, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 7.42e-10 | 6 |
neuroblast | 7.42e-10 | 6 |
electrically signaling cell | 7.42e-10 | 6 |
regulatory T cell | 5.02e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 5.02e-08 | 2 |
naive regulatory T cell | 5.02e-08 | 2 |
endothelial cell of sinusoid | 5.74e-08 | 2 |
endothelial cell of hepatic sinusoid | 5.74e-08 | 2 |
neuronal stem cell | 1.31e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 1.07e-14 | 1 |
cranial nerve | 1.07e-14 | 1 |
nerve trunk | 1.07e-14 | 1 |
nerve connecting eye with brain | 1.07e-14 | 1 |
nerve | 1.07e-14 | 1 |
retinal neural layer | 1.07e-14 | 1 |
presumptive neural retina | 1.07e-14 | 1 |
occipital pole | 1.61e-14 | 1 |
pole of cerebral hemisphere | 1.61e-14 | 1 |
neocortex | 2.06e-10 | 20 |
regional part of cerebral cortex | 1.58e-09 | 22 |
nervous system | 1.66e-08 | 89 |
trunk blood vessel | 1.85e-08 | 7 |
cerebral cortex | 1.87e-08 | 25 |
pallium | 1.87e-08 | 25 |
amygdala | 3.56e-08 | 2 |
neural tissue | 5.37e-08 | 2 |
multi cell component structure | 5.37e-08 | 2 |
neuron projection bundle | 5.37e-08 | 2 |
hepatic sinusoid | 5.74e-08 | 2 |
abdomen blood vessel | 5.74e-08 | 2 |
sinusoid | 5.74e-08 | 2 |
abdominal segment blood vessel | 5.74e-08 | 2 |
central nervous system | 2.56e-07 | 81 |