FFCP PHASE1:Hg19::chr11:109990513..109990520,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:109990513..109990520,- | |||
|coexpression_cluster_id=C789 | |coexpression_cluster_id=C789 | ||
|description=CAGE_peak_at_chr11:109990513..109990520,- | |description=CAGE_peak_at_chr11:109990513..109990520,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002586!6.27e-67!3;CL:0000149!1.88e-50!4;CL:0000147!1.19e-25!14;CL:0000325!1.70e-09!39 | |ontology_enrichment_celltype=CL:0002586!6.27e-67!3;CL:0000149!1.88e-50!4;CL:0000147!1.19e-25!14;CL:0000325!1.70e-09!39 | ||
|ontology_enrichment_celltype_v019=CL:0002586;3.48e-118;3!CL:0000149;5.72e-89;4!CL:0000147;3.17e-26;14!CL:0000047;6.96e-21;2 | |ontology_enrichment_celltype_v019=CL:0002586;3.48e-118;3!CL:0000149;5.72e-89;4!CL:0000147;3.17e-26;14!CL:0000047;6.96e-21;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002586,3.48e-118,3;CL:0000149,5.72e-89,4;CL:0000147,3.17e-26,14 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.60e-14;3 | |ontology_enrichment_development_v019=UBERON:0003056;1.60e-14;3 | ||
|ontology_enrichment_disease=DOID:1036!6.88e-12!8 | |ontology_enrichment_disease=DOID:1036!6.88e-12!8 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000966!5.17e-71!5;UBERON:0005388!5.17e-71!5;UBERON:0001802!5.17e-71!5;UBERON:0001781!6.27e-67!3;UBERON:0001782!6.27e-67!3;UBERON:0005424!6.27e-67!3;UBERON:0000970!7.95e-28!20;UBERON:0002104!1.62e-26!21;UBERON:0000020!3.05e-24!23;UBERON:0001032!3.02e-23!24;UBERON:0004456!3.02e-23!24;UBERON:0000019!3.82e-19!19;UBERON:0000047!3.82e-19!19;UBERON:0004088!3.82e-19!19;UBERON:0003072!3.82e-19!19;UBERON:0003071!3.82e-19!19;UBERON:0004128!3.82e-19!19;UBERON:0007625!6.80e-19!11;UBERON:0001456!2.28e-17!21;UBERON:0005085!1.06e-12!29;UBERON:0001444!8.12e-08!48 | |ontology_enrichment_uberon=UBERON:0000966!5.17e-71!5;UBERON:0005388!5.17e-71!5;UBERON:0001802!5.17e-71!5;UBERON:0001781!6.27e-67!3;UBERON:0001782!6.27e-67!3;UBERON:0005424!6.27e-67!3;UBERON:0000970!7.95e-28!20;UBERON:0002104!1.62e-26!21;UBERON:0000020!3.05e-24!23;UBERON:0001032!3.02e-23!24;UBERON:0004456!3.02e-23!24;UBERON:0000019!3.82e-19!19;UBERON:0000047!3.82e-19!19;UBERON:0004088!3.82e-19!19;UBERON:0003072!3.82e-19!19;UBERON:0003071!3.82e-19!19;UBERON:0004128!3.82e-19!19;UBERON:0007625!6.80e-19!11;UBERON:0001456!2.28e-17!21;UBERON:0005085!1.06e-12!29;UBERON:0001444!8.12e-08!48 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;9.01e-126;5!UBERON:0005388;9.01e-126;5!UBERON:0001802;9.01e-126;5!UBERON:0001781;3.48e-118;3!UBERON:0001782;3.48e-118;3!UBERON:0000019;7.04e-34;19!UBERON:0000047;7.04e-34;19!UBERON:0004088;7.04e-34;19!UBERON:0010230;7.04e-34;19!UBERON:0007625;4.29e-33;11!UBERON:0000970;3.13e-32;20!UBERON:0002104;9.67e-31;21!UBERON:0001456;9.67e-31;21!UBERON:0000020;3.80e-28;23!UBERON:0001032;5.19e-27;24!UBERON:0004456;5.19e-27;24!UBERON:0000033;9.57e-13;50!UBERON:0010371;1.89e-11;31!UBERON:0001444;2.56e-11;48!UBERON:0007811;7.66e-08;52!UBERON:0000153;1.04e-07;54 | |ontology_enrichment_uberon_v019=UBERON:0000966;9.01e-126;5!UBERON:0005388;9.01e-126;5!UBERON:0001802;9.01e-126;5!UBERON:0001781;3.48e-118;3!UBERON:0001782;3.48e-118;3!UBERON:0000019;7.04e-34;19!UBERON:0000047;7.04e-34;19!UBERON:0004088;7.04e-34;19!UBERON:0010230;7.04e-34;19!UBERON:0007625;4.29e-33;11!UBERON:0000970;3.13e-32;20!UBERON:0002104;9.67e-31;21!UBERON:0001456;9.67e-31;21!UBERON:0000020;3.80e-28;23!UBERON:0001032;5.19e-27;24!UBERON:0004456;5.19e-27;24!UBERON:0000033;9.57e-13;50!UBERON:0010371;1.89e-11;31!UBERON:0001444;2.56e-11;48!UBERON:0007811;7.66e-08;52!UBERON:0000153;1.04e-07;54 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,3.48e-118,3;UBERON:0005424,3.48e-118,3;UBERON:0000966,5.17e-105,6;UBERON:0005388,5.17e-105,6;UBERON:0001802,5.17e-105,6;UBERON:0001781,5.72e-89,4;UBERON:0007625,4.29e-33,11;UBERON:0000019,3.13e-32,20;UBERON:0000047,3.13e-32,20;UBERON:0010312,3.13e-32,20;UBERON:0004088,3.13e-32,20;UBERON:0010230,3.13e-32,20;UBERON:0003072,3.13e-32,20;UBERON:0004128,3.13e-32,20;UBERON:0003071,3.13e-32,20;UBERON:0000970,9.67e-31,21;UBERON:0002104,9.67e-31,21;UBERON:0001456,2.19e-29,22;UBERON:0000020,5.19e-27,24;UBERON:0001032,5.19e-27,24;UBERON:0004456,5.19e-27,24;UBERON:0005085,4.17e-21,31;UBERON:0001444,1.22e-13,49;UBERON:0000033,5.06e-12,56;UBERON:0000153,6.33e-11,62;UBERON:0007811,6.33e-11,62;UBERON:0003056,6.33e-11,61;UBERON:0003075,2.54e-08,82;UBERON:0007284,2.54e-08,82;UBERON:0002346,5.76e-08,86 | |||
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|short_description=p@chr11:109990513..109990520,- | |short_description=p@chr11:109990513..109990520,- | ||
}} | }} |
Latest revision as of 18:00, 23 July 2015
Short description: | p@chr11:109990513..109990520, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:109990513..109990520, - |
Coexpression cluster: | C789_retina_Retinal_medulla_stomach_lung_eye_corpus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 3.48e-118 | 3 |
visual pigment cell | 5.72e-89 | 4 |
pigment cell | 3.17e-26 | 14 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 3.48e-118 | 3 |
presumptive retinal pigmented epithelium | 3.48e-118 | 3 |
retina | 5.17e-105 | 6 |
photoreceptor array | 5.17e-105 | 6 |
posterior segment of eyeball | 5.17e-105 | 6 |
layer of retina | 5.72e-89 | 4 |
pigment epithelium of eye | 4.29e-33 | 11 |
camera-type eye | 3.13e-32 | 20 |
simple eye | 3.13e-32 | 20 |
immature eye | 3.13e-32 | 20 |
ocular region | 3.13e-32 | 20 |
eyeball of camera-type eye | 3.13e-32 | 20 |
optic cup | 3.13e-32 | 20 |
optic vesicle | 3.13e-32 | 20 |
eye primordium | 3.13e-32 | 20 |
eye | 9.67e-31 | 21 |
visual system | 9.67e-31 | 21 |
face | 2.19e-29 | 22 |
sense organ | 5.19e-27 | 24 |
sensory system | 5.19e-27 | 24 |
entire sense organ system | 5.19e-27 | 24 |
ectodermal placode | 4.17e-21 | 31 |
subdivision of head | 1.22e-13 | 49 |
head | 5.06e-12 | 56 |
anterior region of body | 6.33e-11 | 62 |
craniocervical region | 6.33e-11 | 62 |
pre-chordal neural plate | 6.33e-11 | 61 |
neural plate | 2.54e-08 | 82 |
presumptive neural plate | 2.54e-08 | 82 |
neurectoderm | 5.76e-08 | 86 |