FFCP PHASE1:Hg19::chr10:65646689..65646702,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:65646689..65646702,+ | |||
|coexpression_cluster_id=C11 | |coexpression_cluster_id=C11 | ||
|description=CAGE_peak_at_chr10:65646689..65646702,+ | |description=CAGE_peak_at_chr10:65646689..65646702,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000138;1.50e-09;6!CL:0000153;8.61e-07;9!CL:0000447;8.61e-07;9 | |ontology_enrichment_celltype_v019=CL:0000138;1.50e-09;6!CL:0000153;8.61e-07;9!CL:0000447;8.61e-07;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000058,1.57e-09,6;CL:0000138,1.57e-09,6;CL:0000153,8.85e-07,9;CL:0000447,8.85e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0006215;4.20e-147;3 | |ontology_enrichment_development_v019=UBERON:0006215;4.20e-147;3 | ||
|ontology_enrichment_disease=DOID:3371!2.32e-13!1;DOID:4549!2.32e-13!1;DOID:5861!2.32e-13!1;DOID:6496!2.32e-13!1 | |ontology_enrichment_disease=DOID:3371!2.32e-13!1;DOID:4549!2.32e-13!1;DOID:5861!2.32e-13!1;DOID:6496!2.32e-13!1 | ||
|ontology_enrichment_disease_v019=DOID:3371;5.12e-50;1!DOID:4549;5.12e-50;1!DOID:5861;5.12e-50;1!DOID:6496;5.12e-50;1!DOID:201;1.50e-09;6!DOID:0060100;1.50e-09;6 | |ontology_enrichment_disease_v019=DOID:3371;5.12e-50;1!DOID:4549;5.12e-50;1!DOID:5861;5.12e-50;1!DOID:6496;5.12e-50;1!DOID:201;1.50e-09;6!DOID:0060100;1.50e-09;6 | ||
|ontology_enrichment_disease_v019_2=DOID:3371,6.58e-50,1;DOID:4549,6.58e-50,1;DOID:5861,6.58e-50,1;DOID:6496,6.58e-50,1;DOID:201,1.57e-09,6;DOID:0060100,1.57e-09,6 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.36e-37!57;UBERON:0005068!1.36e-37!57;UBERON:0006241!1.36e-37!57;UBERON:0007135!1.36e-37!57;UBERON:0002616!2.76e-36!59;UBERON:0004733!2.89e-35!12;UBERON:0002028!2.89e-35!12;UBERON:0007277!2.89e-35!12;UBERON:0000955!4.47e-35!69;UBERON:0006238!4.47e-35!69;UBERON:0001017!1.20e-33!82;UBERON:0002680!5.97e-33!9;UBERON:0001895!5.97e-33!9;UBERON:0010092!5.97e-33!9;UBERON:0004732!1.54e-32!13;UBERON:0005743!4.88e-32!86;UBERON:0000073!6.73e-29!94;UBERON:0001016!6.73e-29!94;UBERON:0003075!2.48e-28!86;UBERON:0007284!2.48e-28!86;UBERON:0003076!3.56e-28!15;UBERON:0003057!3.56e-28!15;UBERON:0002346!5.23e-27!90;UBERON:0007023!4.35e-24!115;UBERON:0002619!5.34e-24!22;UBERON:0000956!3.57e-21!25;UBERON:0000203!3.57e-21!25;UBERON:0002020!2.84e-20!34;UBERON:0003528!2.84e-20!34;UBERON:0001950!1.76e-19!20;UBERON:0000033!3.80e-19!123;UBERON:0002037!9.57e-19!6;UBERON:0006215!9.57e-19!6;UBERON:0000153!3.48e-18!129;UBERON:0007811!3.48e-18!129;UBERON:0002780!9.32e-17!41;UBERON:0001890!9.32e-17!41;UBERON:0006240!9.32e-17!41;UBERON:0002771!1.08e-16!3;UBERON:0001869!1.43e-16!32;UBERON:0000988!1.61e-16!3;UBERON:0003080!2.39e-16!42;UBERON:0002791!4.56e-16!33;UBERON:0001893!1.36e-15!34;UBERON:0004121!1.81e-15!169;UBERON:0000924!4.51e-15!173;UBERON:0006601!4.51e-15!173;UBERON:0002298!8.19e-14!8;UBERON:0001871!1.02e-13!7;UBERON:0002902!8.64e-13!1;UBERON:0009899!8.64e-13!1;UBERON:0002022!1.09e-12!1;UBERON:0003056!4.35e-11!61;UBERON:0000025!6.56e-10!194;UBERON:0000200!8.24e-09!6;UBERON:0004111!1.34e-07!241;UBERON:0002360!3.09e-07!2;UBERON:0000094!3.09e-07!2;UBERON:0007645!3.09e-07!2;UBERON:0000064!3.10e-07!219;UBERON:0001870!3.48e-07!2;UBERON:0001954!4.17e-07!2;UBERON:0003022!4.17e-07!2;UBERON:0002421!4.17e-07!2;UBERON:0002600!4.17e-07!2;UBERON:0002148!4.42e-07!2;UBERON:0009662!4.42e-07!2;UBERON:0001897!4.69e-07!2 | |ontology_enrichment_uberon=UBERON:0001049!1.36e-37!57;UBERON:0005068!1.36e-37!57;UBERON:0006241!1.36e-37!57;UBERON:0007135!1.36e-37!57;UBERON:0002616!2.76e-36!59;UBERON:0004733!2.89e-35!12;UBERON:0002028!2.89e-35!12;UBERON:0007277!2.89e-35!12;UBERON:0000955!4.47e-35!69;UBERON:0006238!4.47e-35!69;UBERON:0001017!1.20e-33!82;UBERON:0002680!5.97e-33!9;UBERON:0001895!5.97e-33!9;UBERON:0010092!5.97e-33!9;UBERON:0004732!1.54e-32!13;UBERON:0005743!4.88e-32!86;UBERON:0000073!6.73e-29!94;UBERON:0001016!6.73e-29!94;UBERON:0003075!2.48e-28!86;UBERON:0007284!2.48e-28!86;UBERON:0003076!3.56e-28!15;UBERON:0003057!3.56e-28!15;UBERON:0002346!5.23e-27!90;UBERON:0007023!4.35e-24!115;UBERON:0002619!5.34e-24!22;UBERON:0000956!3.57e-21!25;UBERON:0000203!3.57e-21!25;UBERON:0002020!2.84e-20!34;UBERON:0003528!2.84e-20!34;UBERON:0001950!1.76e-19!20;UBERON:0000033!3.80e-19!123;UBERON:0002037!9.57e-19!6;UBERON:0006215!9.57e-19!6;UBERON:0000153!3.48e-18!129;UBERON:0007811!3.48e-18!129;UBERON:0002780!9.32e-17!41;UBERON:0001890!9.32e-17!41;UBERON:0006240!9.32e-17!41;UBERON:0002771!1.08e-16!3;UBERON:0001869!1.43e-16!32;UBERON:0000988!1.61e-16!3;UBERON:0003080!2.39e-16!42;UBERON:0002791!4.56e-16!33;UBERON:0001893!1.36e-15!34;UBERON:0004121!1.81e-15!169;UBERON:0000924!4.51e-15!173;UBERON:0006601!4.51e-15!173;UBERON:0002298!8.19e-14!8;UBERON:0001871!1.02e-13!7;UBERON:0002902!8.64e-13!1;UBERON:0009899!8.64e-13!1;UBERON:0002022!1.09e-12!1;UBERON:0003056!4.35e-11!61;UBERON:0000025!6.56e-10!194;UBERON:0000200!8.24e-09!6;UBERON:0004111!1.34e-07!241;UBERON:0002360!3.09e-07!2;UBERON:0000094!3.09e-07!2;UBERON:0007645!3.09e-07!2;UBERON:0000064!3.10e-07!219;UBERON:0001870!3.48e-07!2;UBERON:0001954!4.17e-07!2;UBERON:0003022!4.17e-07!2;UBERON:0002421!4.17e-07!2;UBERON:0002600!4.17e-07!2;UBERON:0002148!4.42e-07!2;UBERON:0009662!4.42e-07!2;UBERON:0001897!4.69e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0002037;2.92e-74;6!UBERON:0002680;6.09e-50;9!UBERON:0001895;6.09e-50;9!UBERON:0004733;9.17e-38;12!UBERON:0002028;9.17e-38;12!UBERON:0004732;5.97e-35;13!UBERON:0002418;1.03e-17;3!UBERON:0004755;1.03e-17;3!UBERON:0000073;7.90e-07;53!UBERON:0002616;7.90e-07;53 | |ontology_enrichment_uberon_v019=UBERON:0002037;2.92e-74;6!UBERON:0002680;6.09e-50;9!UBERON:0001895;6.09e-50;9!UBERON:0004733;9.17e-38;12!UBERON:0002028;9.17e-38;12!UBERON:0004732;5.97e-35;13!UBERON:0002418;1.03e-17;3!UBERON:0004755;1.03e-17;3!UBERON:0000073;7.90e-07;53!UBERON:0002616;7.90e-07;53 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,2.58e-74,6;UBERON:0006215,2.58e-74,6;UBERON:0002680,5.60e-50,9;UBERON:0001895,5.60e-50,9;UBERON:0010092,5.60e-50,9;UBERON:0004733,8.61e-38,12;UBERON:0002028,8.61e-38,12;UBERON:0007277,8.61e-38,12;UBERON:0004732,5.63e-35,13;UBERON:0003076,1.81e-30,15;UBERON:0003057,1.81e-30,15;UBERON:0002418,1.12e-17,3;UBERON:0004755,1.12e-17,3;UBERON:0000073,3.61e-09,53;UBERON:0002616,3.61e-09,53;UBERON:0001049,9.89e-09,56;UBERON:0005068,9.89e-09,56;UBERON:0006241,9.89e-09,56;UBERON:0007135,9.89e-09,56;UBERON:0000955,2.91e-07,68;UBERON:0006238,2.91e-07,68 | |||
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|short_description=p@chr10:65646689..65646702,+ | |short_description=p@chr10:65646689..65646702,+ | ||
}} | }} |
Latest revision as of 14:48, 23 July 2015
Short description: | p@chr10:65646689..65646702, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:65646689..65646702, + |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 1.57e-09 | 6 |
chondrocyte | 1.57e-09 | 6 |
GAG secreting cell | 8.85e-07 | 9 |
carbohydrate secreting cell | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 2.58e-74 | 6 |
rhombic lip | 2.58e-74 | 6 |
regional part of metencephalon | 5.60e-50 | 9 |
metencephalon | 5.60e-50 | 9 |
future metencephalon | 5.60e-50 | 9 |
segmental subdivision of hindbrain | 8.61e-38 | 12 |
hindbrain | 8.61e-38 | 12 |
presumptive hindbrain | 8.61e-38 | 12 |
segmental subdivision of nervous system | 5.63e-35 | 13 |
posterior neural tube | 1.81e-30 | 15 |
chordal neural plate | 1.81e-30 | 15 |
cartilage tissue | 1.12e-17 | 3 |
skeletal tissue | 1.12e-17 | 3 |
regional part of nervous system | 3.61e-09 | 53 |
regional part of brain | 3.61e-09 | 53 |
neural tube | 9.89e-09 | 56 |
neural rod | 9.89e-09 | 56 |
future spinal cord | 9.89e-09 | 56 |
neural keel | 9.89e-09 | 56 |
brain | 2.91e-07 | 68 |
future brain | 2.91e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 6.58e-50 | 1 |
extraosseous chondrosarcoma | 6.58e-50 | 1 |
myxoid chondrosarcoma | 6.58e-50 | 1 |
extraskeletal myxoid chondrosarcoma | 6.58e-50 | 1 |
connective tissue cancer | 1.57e-09 | 6 |
musculoskeletal system cancer | 1.57e-09 | 6 |