FFCP PHASE1:Hg19::chr10:125803110..125803113,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:125803110..125803113,+ | |||
|coexpression_cluster_id=C0 | |coexpression_cluster_id=C0 | ||
|description=CAGE_peak_at_chr10:125803110..125803113,+ | |description=CAGE_peak_at_chr10:125803110..125803113,+ | ||
|id=chr10:125803110..125803113,+ | |id=chr10:125803110..125803113,+ | ||
|ontology_enrichment_celltype=CL:0002057!1.36e-80!42;CL:0000860!1.10e-74!45;CL:0002194!1.53e-53!63;CL:0000576!1.53e-53!63;CL:0000040!1.53e-53!63;CL:0000559!1.53e-53!63;CL:0002009!1.14e-51!65;CL:0000839!1.86e-47!70;CL:0000557!1.10e-46!71;CL:0000766!3.96e-46!76;CL:0002087!2.67e-30!119;CL:0000763!8.82e-29!112;CL:0000049!8.82e-29!112;CL:0000738!3.18e-26!140;CL:0002031!3.68e-25!124;CL:0000037!9.40e-20!172;CL:0000566!9.40e-20!172;CL:0002032!2.93e-18!165;CL:0000837!2.93e-18!165;CL:0000988!3.37e-18!182;CL:0000048!1.59e-10!430;CL:0000723!3.12e-10!436;CL:0002393!5.17e-10!9;CL:0002397!5.17e-10!9;CL:0000034!7.44e-10!444;CL:0000134!6.45e-09!358;CL:0002320!1.45e-08!365;CL:0002371!3.54e-08!591;CL:0000219!6.02e-08!390;CL:0000144!4.12e-07!625 | |ontology_enrichment_celltype=CL:0002057!1.36e-80!42;CL:0000860!1.10e-74!45;CL:0002194!1.53e-53!63;CL:0000576!1.53e-53!63;CL:0000040!1.53e-53!63;CL:0000559!1.53e-53!63;CL:0002009!1.14e-51!65;CL:0000839!1.86e-47!70;CL:0000557!1.10e-46!71;CL:0000766!3.96e-46!76;CL:0002087!2.67e-30!119;CL:0000763!8.82e-29!112;CL:0000049!8.82e-29!112;CL:0000738!3.18e-26!140;CL:0002031!3.68e-25!124;CL:0000037!9.40e-20!172;CL:0000566!9.40e-20!172;CL:0002032!2.93e-18!165;CL:0000837!2.93e-18!165;CL:0000988!3.37e-18!182;CL:0000048!1.59e-10!430;CL:0000723!3.12e-10!436;CL:0002393!5.17e-10!9;CL:0002397!5.17e-10!9;CL:0000034!7.44e-10!444;CL:0000134!6.45e-09!358;CL:0002320!1.45e-08!365;CL:0002371!3.54e-08!591;CL:0000219!6.02e-08!390;CL:0000144!4.12e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0000860;8.48e-67;33!CL:0002057;8.48e-67;33!CL:0000473;7.35e-46;39!CL:0000234;7.35e-46;39!CL:0000576;3.04e-38;48!CL:0000766;2.31e-23;69!CL:0002087;4.13e-13;104!CL:0002539;2.06e-12;10!CL:0000763;2.14e-12;100!CL:0002393;1.08e-11;6!CL:0002397;1.08e-11;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.58e-77,42;CL:0002057,2.58e-77,42;CL:0000473,3.20e-67,48;CL:0000234,3.20e-67,48;CL:0002194,4.39e-53,59;CL:0000576,4.39e-53,59;CL:0000040,4.39e-53,59;CL:0000559,4.39e-53,59;CL:0002009,2.94e-51,61;CL:0000839,3.59e-47,66;CL:0000557,2.00e-46,67;CL:0000766,5.27e-43,72;CL:0000763,1.29e-27,108;CL:0000049,1.29e-27,108;CL:0002087,9.90e-26,115;CL:0002031,1.62e-24,120;CL:0000738,3.17e-21,136;CL:0002032,2.23e-17,161;CL:0000837,2.23e-17,161;CL:0000037,1.67e-16,168;CL:0000988,1.76e-15,177;CL:0002539,2.03e-12,10;CL:0000048,4.01e-08,427;CL:0002393,5.81e-08,9;CL:0002397,5.81e-08,9;CL:0000723,5.96e-08,433;CL:0000034,9.95e-08,441 | |||
|ontology_enrichment_development_v019=CL:0002057;3.02e-55;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.37e-40!80;UBERON:0001474!3.14e-37!86;UBERON:0002390!1.81e-34!102;UBERON:0003061!1.81e-34!102;UBERON:0004765!1.13e-32!101;UBERON:0001434!1.13e-32!101;UBERON:0002193!1.15e-30!112;UBERON:0002204!6.59e-27!167;UBERON:0002405!6.72e-26!115;UBERON:0003081!1.66e-22!216;UBERON:0000926!6.23e-09!448;UBERON:0004120!6.23e-09!448;UBERON:0006603!6.23e-09!448;UBERON:0002384!4.34e-08!375 | |ontology_enrichment_uberon=UBERON:0002371!1.37e-40!80;UBERON:0001474!3.14e-37!86;UBERON:0002390!1.81e-34!102;UBERON:0003061!1.81e-34!102;UBERON:0004765!1.13e-32!101;UBERON:0001434!1.13e-32!101;UBERON:0002193!1.15e-30!112;UBERON:0002204!6.59e-27!167;UBERON:0002405!6.72e-26!115;UBERON:0003081!1.66e-22!216;UBERON:0000926!6.23e-09!448;UBERON:0004120!6.23e-09!448;UBERON:0006603!6.23e-09!448;UBERON:0002384!4.34e-08!375 | ||
|ontology_enrichment_uberon_v019=UBERON:0004237;2.06e-12;10!UBERON:0004695;2.06e-12;10!UBERON:0002111;2.06e-12;10!UBERON:0004178;2.06e-12;10!UBERON:0001135;2.50e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.38e-40,76;UBERON:0001474,2.14e-37,82;UBERON:0004765,8.57e-34,90;UBERON:0002405,1.34e-32,93;UBERON:0002390,9.00e-31,98;UBERON:0003061,9.00e-31,98;UBERON:0001434,4.32e-30,100;UBERON:0002193,1.29e-27,108;UBERON:0002204,8.83e-25,167;UBERON:0003081,1.04e-19,203;UBERON:0000926,1.66e-12,315;UBERON:0004120,1.66e-12,315;UBERON:0006603,1.66e-12,315;UBERON:0004237,2.03e-12,10;UBERON:0004695,2.03e-12,10;UBERON:0002111,2.03e-12,10;UBERON:0004178,2.03e-12,10;UBERON:0001135,2.48e-08,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36162573225888,8.43772339233568,5.84248072309899,1.46379839637152,0,0,0,0,0,0,0,0,0,0,0,0.77408061658038,0,0,0,0,0,0,1.10799081706375,1.40381113229099,1.95309783644267,0,0,0,0,0,0,2.32429036905685,0.822335776043652,0.929119112685311,6.61692502340946,7.68482119587302,3.54723344832878,17.5820297175675,5.80936215225443,9.47985406160392,0.376484679085209,0.545812300115692,0.674170453335254,33.6692281607993,7.06043859567406,21.0981251513684,0,0.398927315243264,0.426224750532694,27.2796684310869,14.7520158419696,26.7813567068097,1.7587406567972,0,1.3031330682307,8.47559303686716,12.8897172595648,20.2535927962166,0,0.212604299965044,0,0.22465726229299,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73927574994817,0.477890301491107,3.14862178514523,0,0,0,0,0.150257608997218,0,0,0,0,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36162573225888,8.43772339233568,5.84248072309899,1.46379839637152,0,0,0,0,0,0,0,0,0,0,0,0.77408061658038,0,0,0,0,0,0,1.10799081706375,1.40381113229099,1.95309783644267,0,0,0,0,0,0,2.32429036905685,0.822335776043652,0.929119112685311,6.61692502340946,7.68482119587302,3.54723344832878,17.5820297175675,5.80936215225443,9.47985406160392,0.376484679085209,0.545812300115692,0.674170453335254,33.6692281607993,7.06043859567406,21.0981251513684,0,0.398927315243264,0.426224750532694,27.2796684310869,14.7520158419696,26.7813567068097,1.7587406567972,0,1.3031330682307,8.47559303686716,12.8897172595648,20.2535927962166,0,0.212604299965044,0,0.22465726229299,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73927574994817,0.477890301491107,3.14862178514523,0,0,0,0,0.150257608997218,0,0,0,0,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr10:125803110..125803113,+ | |short_description=p@chr10:125803110..125803113,+ | ||
}} | }} |
Latest revision as of 11:18, 23 July 2015
Short description: | p@chr10:125803110..125803113, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:125803110..125803113, + |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.58e-77 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.58e-77 | 42 |
defensive cell | 3.20e-67 | 48 |
phagocyte | 3.20e-67 | 48 |
monopoietic cell | 4.39e-53 | 59 |
monocyte | 4.39e-53 | 59 |
monoblast | 4.39e-53 | 59 |
promonocyte | 4.39e-53 | 59 |
macrophage dendritic cell progenitor | 2.94e-51 | 61 |
myeloid lineage restricted progenitor cell | 3.59e-47 | 66 |
granulocyte monocyte progenitor cell | 2.00e-46 | 67 |
myeloid leukocyte | 5.27e-43 | 72 |
myeloid cell | 1.29e-27 | 108 |
common myeloid progenitor | 1.29e-27 | 108 |
nongranular leukocyte | 9.90e-26 | 115 |
hematopoietic lineage restricted progenitor cell | 1.62e-24 | 120 |
leukocyte | 3.17e-21 | 136 |
hematopoietic oligopotent progenitor cell | 2.23e-17 | 161 |
hematopoietic multipotent progenitor cell | 2.23e-17 | 161 |
hematopoietic stem cell | 1.67e-16 | 168 |
hematopoietic cell | 1.76e-15 | 177 |
aortic smooth muscle cell | 2.03e-12 | 10 |
multi fate stem cell | 4.01e-08 | 427 |
intermediate monocyte | 5.81e-08 | 9 |
CD14-positive, CD16-positive monocyte | 5.81e-08 | 9 |
somatic stem cell | 5.96e-08 | 433 |
stem cell | 9.95e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.38e-40 | 76 |
bone element | 2.14e-37 | 82 |
skeletal element | 8.57e-34 | 90 |
immune system | 1.34e-32 | 93 |
hematopoietic system | 9.00e-31 | 98 |
blood island | 9.00e-31 | 98 |
skeletal system | 4.32e-30 | 100 |
hemolymphoid system | 1.29e-27 | 108 |
musculoskeletal system | 8.83e-25 | 167 |
lateral plate mesoderm | 1.04e-19 | 203 |
mesoderm | 1.66e-12 | 315 |
mesoderm-derived structure | 1.66e-12 | 315 |
presumptive mesoderm | 1.66e-12 | 315 |
blood vessel smooth muscle | 2.03e-12 | 10 |
arterial system smooth muscle | 2.03e-12 | 10 |
artery smooth muscle tissue | 2.03e-12 | 10 |
aorta smooth muscle tissue | 2.03e-12 | 10 |
smooth muscle tissue | 2.48e-08 | 15 |