FF:976-16D8: Difference between revisions

Revision as of 11:19, 28 November 2014

Name:	intestine, embryo E15
Species:	Mouse (Mus musculus)
Library ID:	CNhs10602
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	C57BL/6J
tissue	intestine
dev stage	15 days embryo
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005725

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10602		CAGE		DRX008992		DRR009866

Accession ID Mm9

Library id		BAM		CTSS
CNhs10602		DRZ001291		DRZ002674

Download raw sequence, BAM & CTSS

Mm9

BAM	CTSS
[{{{mm9bam}}} download]	[{{{mm9ctss}}} donwload]

Mm10

BAM	CTSS
[{{{mm10bam}}} download]	[{{{mm10ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs10602

0	0
1	0
10	0
100	0
1000	0.0996
1001	-0.00926
1002	0.299
1003	-0.00275
1004	0
1005	0.042
1006	-0.0642
1007	0.0652
1008	0
1009	0.0534
101	0.133
1010	0.142
1011	0
1012	0
1013	-0.12
1014	0.241
1015	0.171
1016	0.167
1017	0
1018	0.0195
1019	0
102	0
1020	0
1021	0
1022	-0.0704
1023	0
1024	0
1025	0.676
1026	0.0188
1027	0.0526
1028	0
1029	0.132
103	0.142
1030	0
1031	0.416
1032	0.044
1033	0.0244
1034	0
1035	0
1036	0.125
1037	0
1038	0.035
1039	-0.114
104	0
1040	0.0951
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10602

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	9.49712e-4
MA0003.1	MA0003.1	0.48
MA0004.1	MA0004.1	0.938
MA0006.1	MA0006.1	0.88
MA0007.1	MA0007.1	0.474
MA0009.1	MA0009.1	0.526
MA0014.1	MA0014.1	0.532
MA0017.1	MA0017.1	0.244
MA0018.2	MA0018.2	0.481
MA0019.1	MA0019.1	0.485
MA0024.1	MA0024.1	2.0755e-7
MA0025.1	MA0025.1	0.0314
MA0027.1	MA0027.1	0.091
MA0028.1	MA0028.1	0.726
MA0029.1	MA0029.1	0.956
MA0030.1	MA0030.1	0.936
MA0031.1	MA0031.1	0.635
MA0035.2	MA0035.2	0.0249
MA0038.1	MA0038.1	0.00593
MA0039.2	MA0039.2	0.197
MA0040.1	MA0040.1	0.428
MA0041.1	MA0041.1	0.461
MA0042.1	MA0042.1	0.978
MA0043.1	MA0043.1	0.679
MA0046.1	MA0046.1	1.98927e-54
MA0047.2	MA0047.2	0.149
MA0048.1	MA0048.1	0.449
MA0050.1	MA0050.1	1.52894e-4
MA0051.1	MA0051.1	8.29912e-4
MA0052.1	MA0052.1	0.013
MA0055.1	MA0055.1	0.364
MA0057.1	MA0057.1	0.547
MA0058.1	MA0058.1	0.914
MA0059.1	MA0059.1	0.274
MA0060.1	MA0060.1	1.11012e-15
MA0061.1	MA0061.1	0.272
MA0062.2	MA0062.2	0.282
MA0065.2	MA0065.2	0.161
MA0066.1	MA0066.1	0.0453
MA0067.1	MA0067.1	0.112
MA0068.1	MA0068.1	0.946
MA0069.1	MA0069.1	0.316
MA0070.1	MA0070.1	0.716
MA0071.1	MA0071.1	0.0431
MA0072.1	MA0072.1	0.0762
MA0073.1	MA0073.1	0.976
MA0074.1	MA0074.1	0.681
MA0076.1	MA0076.1	0.689
MA0077.1	MA0077.1	0.152
MA0078.1	MA0078.1	0.99
MA0079.2	MA0079.2	0.175
MA0080.2	MA0080.2	0.179
MA0081.1	MA0081.1	0.116
MA0083.1	MA0083.1	1.21617e-5
MA0084.1	MA0084.1	0.873
MA0087.1	MA0087.1	0.247
MA0088.1	MA0088.1	0.975
MA0090.1	MA0090.1	0.279
MA0091.1	MA0091.1	0.737
MA0092.1	MA0092.1	0.56
MA0093.1	MA0093.1	0.917
MA0099.2	MA0099.2	0.22
MA0100.1	MA0100.1	0.146
MA0101.1	MA0101.1	0.394
MA0102.2	MA0102.2	0.939
MA0103.1	MA0103.1	0.87
MA0104.2	MA0104.2	0.711
MA0105.1	MA0105.1	0.0376
MA0106.1	MA0106.1	0.259
MA0107.1	MA0107.1	0.289
MA0108.2	MA0108.2	0.0235
MA0111.1	MA0111.1	0.354
MA0112.2	MA0112.2	0.00132
MA0113.1	MA0113.1	0.711
MA0114.1	MA0114.1	0.122
MA0115.1	MA0115.1	0.133
MA0116.1	MA0116.1	0.0572
MA0117.1	MA0117.1	0.0259
MA0119.1	MA0119.1	0.0549
MA0122.1	MA0122.1	0.654
MA0124.1	MA0124.1	0.644
MA0125.1	MA0125.1	0.385
MA0131.1	MA0131.1	0.178
MA0135.1	MA0135.1	0.0261
MA0136.1	MA0136.1	0.422
MA0137.2	MA0137.2	0.496
MA0138.2	MA0138.2	0.0829
MA0139.1	MA0139.1	0.984
MA0140.1	MA0140.1	0.261
MA0141.1	MA0141.1	0.0161
MA0142.1	MA0142.1	0.426
MA0143.1	MA0143.1	0.893
MA0144.1	MA0144.1	0.867
MA0145.1	MA0145.1	0.394
MA0146.1	MA0146.1	0.918
MA0147.1	MA0147.1	0.444
MA0148.1	MA0148.1	0.109
MA0149.1	MA0149.1	0.0708
MA0150.1	MA0150.1	0.00238
MA0152.1	MA0152.1	0.904
MA0153.1	MA0153.1	2.22914e-33
MA0154.1	MA0154.1	0.0753
MA0155.1	MA0155.1	0.268
MA0156.1	MA0156.1	0.847
MA0157.1	MA0157.1	0.419
MA0159.1	MA0159.1	0.172
MA0160.1	MA0160.1	0.0885
MA0162.1	MA0162.1	0.894
MA0163.1	MA0163.1	0.745
MA0164.1	MA0164.1	0.815
MA0258.1	MA0258.1	4.1904e-4
MA0259.1	MA0259.1	0.717

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10602

Novel motif	Logo	P-value
1	1	0.0445
10	10	0.194
100	100	0.66
101	101	0.577
102	102	0.379
103	103	0.0525
104	104	0.849
105	105	0.665
106	106	0.357
107	107	0.919
108	108	0.987
109	109	0.143
11	11	0.116
110	110	0.238
111	111	0.0212
112	112	0.257
113	113	0.485
114	114	5.87304e-4
115	115	0.207
116	116	0.766
117	117	0.084
118	118	0.514
119	119	0.0996
12	12	0.502
120	120	0.996
121	121	0.797
122	122	0.817
123	123	0.28
124	124	0.274
125	125	0.207
126	126	0.504
127	127	0.388
128	128	0.321
129	129	0.207
13	13	0.946
130	130	0.319
131	131	0.774
132	132	0.707
133	133	0.472
134	134	0.901
135	135	0.81
136	136	0.73
137	137	0.781
138	138	0.061
139	139	0.108
14	14	0.383
140	140	0.0196
141	141	0.545
142	142	0.146
143	143	0.0383
144	144	0.323
145	145	0.909
146	146	0.679
147	147	0.401
148	148	0.759
149	149	0.666
15	15	0.052
150	150	0.832
151	151	0.0663
152	152	0.571
153	153	0.12
154	154	0.31
155	155	0.348
156	156	5.86971e-4
157	157	0.458
158	158	0.34
159	159	0.203
160	160	0.398
161	161	0.917
162	162	0.452
163	163	0.291
164	164	0.15
165	165	0.309
166	166	0.207
167	167	0.341
168	168	0.434
169	169	0.187
17	17	0.209
18	18	0.115
19	19	0.939
2	2	0.619
20	20	0.344
21	21	0.542
22	22	0.582
23	23	0.121
24	24	0.435
25	25	0.281
26	26	0.778
27	27	0.677
28	28	0.117
29	29	0.423
3	3	0.121
30	30	0.572
31	31	0.314
32	32	0.177
33	33	0.685
34	34	0.568
35	35	0.0613
36	36	0.176
37	37	0.0571
38	38	0.527
39	39	0.867
4	4	0.883
40	40	0.891
41	41	0.197
42	42	0.323
43	43	0.121
44	44	0.114
45	45	0.606
46	46	0.392
47	47	0.237
48	48	0.215
49	49	0.0617
5	5	0.114
50	50	0.597
51	51	0.743
52	52	0.371
53	53	0.583
54	54	0.621
55	55	0.395
56	56	0.5
57	57	0.0957
58	58	0.252
59	59	0.211
6	6	0.788
60	60	0.712
61	61	0.962
62	62	0.0157
63	63	0.168
64	64	0.525
65	65	0.268
66	66	0.725
67	67	0.143
68	68	0.289
69	69	0.111
7	7	0.693
70	70	9.77315e-4
71	71	0.227
72	72	0.658
73	73	0.0711
74	74	0.958
75	75	0.0425
76	76	0.303
77	77	0.429
78	78	0.343
79	79	0.364
8	8	0.0378
80	80	0.247
81	81	0.212
82	82	0.018
83	83	0.0978
84	84	0.974
85	85	0.00643
86	86	0.793
87	87	0.948
88	88	0.538
89	89	0.427
9	9	0.936
90	90	0.0126
91	91	0.0684
92	92	0.148
93	93	0.566
94	94	0.0408
95	95	0.12
96	96	0.0873
97	97	0.826
98	98	0.161
99	99	0.483

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10602

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011441 mouse intestine- embryo E15 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000298 (mouse embryonic day 15 sample)
0011441 (mouse intestine- embryo E15 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:148118639..148118715,-!p1@Cdx2!1.80!61.60!Cdx2;;chr3:3634145..3634161,+!p1@Hnf4g!1.70!48.84!Hnf4g;;chr8:59799772..59799789,+!p1@Hand2!1.61!111.60!Hand2;;chr10:22539932..22539956,-!p1@Tcf21!1.61!103.35!Tcf21;;chr2:163332558..163332596,+!p2@Hnf4a!1.60!39.18!Hnf4a;;chr8:77396591..77396639,+!p1@Isx!1.60!38.92!Isx;;chr1:137155026..137155042,-!p1@Elf3!1.57!201.29!Elf3;;chr8:123608252..123608268,+!p1@Foxf1a!1.52!46.78!Foxf1a;;chr3:3508024..3508069,+!p2@Hnf4g!1.46!27.58!Hnf4g;;chr10:88969376..88969395,-!p1@Nr1h4!1.45!27.19!Nr1h4;;chr19:43686789..43686811,+!p1@Nkx2-3!1.41!24.48!Nkx2-3;;chr11:57645506..57645523,-!p1@Hand1!1.35!21.13!Hand1;;chr5:148118840..148118857,-!p2@Cdx2!1.34!21.01!Cdx2;;chr10:86956396..86956411,-!p1@Ascl1!1.32!30.54!Ascl1;;chr13:31717548..31717596,+!p1@Foxf2!1.29!36.34!Foxf2;;chr7:108966820..108966835,+!p1@Phox2a!1.28!17.91!Phox2a;;chr7:17647736..17647772,-!p1@Hif3a!1.24!56.83!Hif3a;;chr10:119913310..119913366,-!p1@Hmga2!1.23!121.78!Hmga2;;chr6:83020355..83020371,-!p1@Tlx2!1.23!16.11!Tlx2;;chr5:67490284..67490302,-!p1@Phox2b!1.23!16.11!Phox2b;;chr10:61595830..61595846,+!p1@Neurog3!1.22!15.59!Neurog3;;chr10:119913546..119913583,-!p3@Hmga2!1.20!31.06!Hmga2;;chr2:164228702..164228719,+!p1@Rbpjl!1.19!14.43!Rbpjl;;chr18:64499706..64499721,+!p2@Onecut2!1.18!19.97!Onecut2;;chr2:163372884..163372904,+!p1@Hnf4a!1.18!14.05!Hnf4a;;chr11:96164821..96164865,+!p1@Hoxb5!1.16!13.53!Hoxb5;;chr14:63864056..63864102,-!p1@Gata4!1.15!22.68!Gata4;;chr13:55932591..55932622,-!p1@Pitx1!1.13!15.21!Pitx1;;chr16:38294860..38294924,-!p1@Nr1i2!1.13!12.50!Nr1i2;;chr10:12810631..12810649,+!p1@Plagl1!1.11!307.22!Plagl1;;chr18:64499674..64499696,+!p1@Onecut2!1.10!20.10!Onecut2;;chr5:148118792..148118806,-!p3@Cdx2!1.10!11.73!Cdx2;;chr6:52154414..52154462,-!p1@Hoxa5!1.09!15.59!Hoxa5;;chr10:119914001..119914078,-!p4@Hmga2!1.06!14.43!Hmga2;;chr2:74583776..74583815,+!p3@Hoxd3!1.06!10.57!Hoxd3;;chr17:27865882..27865901,-!p1@Spdef!1.05!10.18!Spdef;;chr15:102828658..102828678,+!p1@Hoxc6!1.03!9.79!Hoxc6;;chr2:180069370..180069409,-!p1@Gata5!1.02!11.08!Gata5;;chr14:99697871..99697934,+!p1@Klf5!1.01!186.99!Klf5;;chr18:61195865..61195880,-!p1@Cdx1!0.97!8.38!Cdx1;;chr8:77397095..77397127,+!p2@Isx!0.97!8.38!Isx;;chr6:52190467..52190500,-!p1@Hoxa10!0.95!7.99!Hoxa10;;chr10:119913278..119913298,-!p2@Hmga2!0.94!17.53!Hmga2;;chr3:128916868..128916890,+!p1@Pitx2!0.94!10.70!Pitx2;;chr12:58646974..58647003,-!p1@Foxa1!0.94!10.57!Foxa1;;chr7:6649134..6649167,-!p1@Zim1!0.93!42.66!Zim1;;chr11:96153767..96153822,+!p1@Hoxb6!0.93!11.86!Hoxb6;;chr18:61195843..61195864,-!p2@Cdx1!0.93!7.60!Cdx1;;chr6:64679112..64679126,+!p1@Atoh1!0.93!7.47!Atoh1;;chr5:148118809..148118832,-!p5@Cdx2!0.91!7.09!Cdx2;;chr6:52154386..52154407,-!p2@Hoxa5!0.90!9.02!Hoxa5;;chr19:5560600..5560617,-!p1@Ovol1!0.90!8.51!Ovol1;;chr12:39510206..39510249,+!p3@Etv1!0.88!6.57!Etv1;;chr10:126778916..126778974,-!p1@Gli1!0.87!15.08!Gli1;;chr7:19608891..19608895,-!p1@Foxa3!0.86!8.25!Foxa3;;chr10:44178521..44178557,-!p1@Prdm1!0.85!11.08!Prdm1;;chr10:119913792..119913820,-!p5@Hmga2!0.85!10.70!Hmga2;;chr16:14705961..14705978,+!p2@Snai2!0.83!28.87!Snai2;;chr10:44178375..44178390,-!p2@Prdm1!0.83!7.99!Prdm1;;chr7:17642018..17642045,-!p4@Hif3a!0.83!6.70!Hif3a;;chr15:102865088..102865107,+!p1@Hoxc4!0.82!7.60!Hoxc4;;chr19:43686882..43686906,+!p2@Nkx2-3!0.81!5.41!Nkx2-3;;chr7:17642053..17642066,-!p2@Hif3a!0.80!7.73!Hif3a;;chr10:127095407..127095440,+!p3@Stat6!0.80!6.70!Stat6;;chr2:19367259..19367278,+!p1@Ptf1a!0.79!5.15!Ptf1a;;chr3:30039329..30039355,-!p5@Mecom!0.79!5.15!Mecom;;chr11:83664365..83664383,+!p1@Hnf1b!0.78!5.03!Hnf1b;;chr13:31717597..31717613,+!p2@Foxf2!0.78!5.03!Foxf2;;chr12:28027561..28027591,-!p1@Sox11!0.77!35.05!Sox11;;chr1:194979315..194979359,+!p1@Irf6!0.77!32.47!Irf6;;chr6:14851440..14851497,+!p2@Foxp2!0.77!12.89!Foxp2;;chr4:84320893..84320910,-!p1@Bnc2!0.77!11.73!Bnc2;;chr13:55932624..55932641,-!p2@Pitx1!0.77!4.90!Pitx1;;chr14:63890519..63890539,-!p3@Gata4!0.77!4.90!Gata4;;chrX:45245679..45245702,-!p1@Smarca1!0.76!23.20!Smarca1;;chr6:52163319..52163342,-!p1@Hoxa3!0.76!7.22!Hoxa3;;chr15:102865131..102865151,+!p2@Hoxc4!0.76!5.54!Hoxc4;;chr1:138857048..138857071,-!p2@Nr5a2!0.76!4.77!Nr5a2;;chr2:103143336..103143367,-!p1@Ehf!0.75!7.86!Ehf;;chr16:14705925..14705951,+!p1@Snai2!0.74!34.67!Snai2;;chr18:11052642..11052659,+!p1@Gata6!0.74!24.87!Gata6;;chr5:115421065..115421088,-!p1@Hnf1a!0.74!4.51!Hnf1a;;chr3:3508005..3508021,+!p3@Hnf4g!0.74!4.51!Hnf4g;;chr19:10315179..10315241,-!p1@Gm98!0.73!50.90!Gm98;;chr1:120879128..120879183,-!p3@Gli2!0.73!8.89!Gli2;;chr5:148118614..148118625,-!p4@Cdx2!0.72!4.25!Cdx2;;chr13:15555670..15555771,+!p2@Gli3!0.71!11.47!Gli3;;chr17:32506357..32506377,-!p3@Wiz!0.71!9.41!Wiz;;chr6:99216375..99216395,-!p5@Foxp1!0.71!4.12!Foxp1;;chr12:12948633..12948651,-!p1@Mycn!0.70!43.56!Mycn;;chr5:144951153..144951203,+!p1@Bhlha15!0.70!6.19!Bhlha15;;chr2:79296783..79296801,-!p1@Neurod1!0.70!3.99!Neurod1;;chr9:24578720..24578735,-!p1@Tbx20!0.70!3.99!Tbx20;;chr18:11052485..11052508,+!p2@Gata6!0.69!12.11!Gata6;;chr2:74549968..74549996,+!p1@Hoxd3!0.69!5.03!Hoxd3;;chr6:52184901..52184959,-!p2@Hoxa10!0.69!3.87!Hoxa10;;chr2:146047829..146047847,+!p1@Insm1!0.68!7.35!Insm1;;chr9:55388997..55389016,+!p1@Isl2!0.68!3.74!Isl2;;chr14:63890491..63890516,-!p2@Gata4!0.68!3.74!Gata4;;chr11:96180045..96180059,+!p1@Hoxb4!0.67!5.41!Hoxb4;;chr2:115891534..115891589,-!p1@Meis2!0.66!59.28!Meis2;;chr13:44825008..44825066,+!p5@Jarid2!0.66!7.73!Jarid2;;chr2:71384802..71384815,-!p1@Dlx2!0.66!4.64!Dlx2;;chr8:77396650..77396662,+!p4@Isx!0.66!3.61!Isx;;chr12:3891753..3891801,+!p4@Dnmt3a!0.65!6.06!Dnmt3a;;chr2:104966766..104966786,+!p1@Wt1!0.65!5.93!Wt1;;chr11:96143666..96143725,+!p1@Hoxb8!0.65!4.12!Hoxb8;;chr1:138857076..138857105,-!p1@Nr5a2!0.65!3.48!Nr5a2;;chr9:74709695..74709722,+!p1@Onecut1!0.65!3.48!Onecut1;;chr14:63890545..63890560,-!p5@Gata4!0.65!3.48!Gata4;;chr15:102821007..102821021,+!p2@Hoxc8!0.65!3.48!Hoxc8;;chr6:99216360..99216372,-!p8@Foxp1!0.65!3.48!Foxp1;;chr11:18918917..18918944,-!p1@Meis1!0.64!51.42!Meis1;;chr10:44178493..44178520,-!p3@Prdm1!0.64!5.03!Prdm1;;chr6:52195795..52195825,-!p1@Hoxa11!0.64!3.35!Hoxa11;;chr2:74529970..74529997,+!p1@Hoxd10!0.64!3.35!Hoxd10;;chr12:9581262..9581282,+!p1@Osr1!0.63!45.88!Osr1;;chr1:186556375..186556404,-!p3@Hlx!0.63!6.44!Hlx;;chr8:111227493..111227517,+!p@chr8:111227493..111227517,+!0.63!6.31!Zfhx3;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.63!6.06!Hoxb2;;chr12:3891810..3891829,+!p2@Dnmt3a!0.63!5.54!Dnmt3a;;chr15:102820964..102821006,+!p1@Hoxc8!0.63!3.22!Hoxc8;;chr7:17642177..17642223,-!p3@Hif3a!0.63!3.22!Hif3a;;chr17:48061584..48061601,-!p2@Foxp4!0.62!24.48!Foxp4;;chr11:96145450..96145517,+!p2@Hoxb7!0.62!5.15!Hoxb7;;chr1:57029281..57029326,-!p1@Satb2!0.61!5.15!Satb2;;chr6:14851250..14851277,+!p4@Foxp2!0.61!4.12!Foxp2;;chr5:42155788..42155800,-!p1@Nkx3-2!0.61!3.09!Nkx3-2;;chr11:98614335..98614349,+!p8@Thra!0.61!3.09!Thra;;chr15:102844431..102844445,+!p1@Hoxc5!0.61!3.09!Hoxc5;;chr2:91864300..91864379,-!p2@Creb3l1!0.60!9.92!Creb3l1;;chr18:11052606..11052633,+!p4@Gata6!0.60!8.63!Gata6;;chr2:169458799..169458832,+!p5@Tshz2!0.60!5.41!Tshz2;;chr6:52114821..52114828,-!p1@Hoxa2!0.60!4.90!Hoxa2;;chr1:138846009..138846038,-!p3@Nr5a2!0.60!3.48!Nr5a2;;chr1:173144100..173144138,+!p2@Nr1i3!0.60!2.96!Nr1i3;;chr2:71367871..71367898,+!p1@Dlx1!0.60!2.96!Dlx1;;chr5:29805118..29805137,-!p1@Mnx1!0.60!2.96!Mnx1;;chr6:14851287..14851342,+!p1@Foxp2!0.59!11.08!Foxp2;;chrX:45245644..45245666,-!p2@Smarca1!0.59!10.95!Smarca1;;chr15:78994907..78994926,-!p1@Sox10!0.59!8.51!Sox10;;chr10:44178474..44178487,-!p4@Prdm1!0.59!4.51!Prdm1;;chr10:119913839..119913869,-!p7@Hmga2!0.59!3.87!Hmga2;;chr12:109242266..109242295,-!p1@Bcl11b!0.58!28.35!Bcl11b;;chr2:163372869..163372882,+!p3@Hnf4a!0.58!2.84!Hnf4a;;chr2:104966874..104966907,+!p2@Wt1!0.58!2.84!Wt1;;chr2:153067094..153067130,-!p1@Plagl2!0.57!83.76!Plagl2;;chr1:186556323..186556370,-!p2@Hlx!0.57!8.63!Hlx;;chr7:89137163..89137200,-!p1@Bnc1!0.57!3.48!Bnc1;;chr8:123651727..123651748,+!p1@ENSMUST00000062634!0.57!2.71!Foxl1;;chr15:102839948..102839975,+!p3@Hoxc6!0.57!2.71!Hoxc6;;chr2:153067079..153067090,-!p2@Plagl2!0.56!6.31!Plagl2;;chr6:52141694..52141715,-!p1@Hoxa4!0.56!3.61!Hoxa4;;chr10:80555320..80555378,-!p1@Creb3l3!0.56!3.22!Creb3l3;;chr14:64562503..64562524,+!p1@Sox7!0.55!18.30!Sox7;;chr14:56443806..56443848,+!p1@Nfatc4!0.55!5.93!Nfatc4;;chr1:189821714..189821761,+!p1@Esrrg!0.55!5.41!Esrrg;;chr2:103143315..103143328,-!p2@Ehf!0.55!2.58!Ehf;;chr11:96160360..96160397,+!p3@Hoxb6!0.55!2.58!Hoxb6;;chr6:15135215..15135244,+!p11@Foxp2!0.55!2.58!Foxp2;;chr13:117099847..117099907,-!p1@Isl1!0.54!5.15!Isl1;;chr4:135129538..135129558,-!p1@Grhl3!0.54!4.12!Grhl3;;chr11:23978291..23978323,+!p7@Bcl11a!0.54!2.45!Bcl11a;;chr4:3865501..3865548,-!p1@Plag1!0.53!15.34!Plag1;;chr13:15555496..15555544,+!p1@Gli3!0.53!10.05!Gli3;;chr15:35225845..35225867,+!p1@Osr2!0.53!7.09!Osr2;;chr14:52639709..52639753,-!p5@Zfp219!0.53!6.19!Zfp219;;chr11:18918820..18918831,-!p4@Meis1!0.53!5.28!Meis1;;chr8:111227518..111227550,+!p@chr8:111227518..111227550,+!0.53!4.64!Zfhx3;;chr2:74542918..74542971,+!p1@Hoxd8!0.53!3.99!Hoxd8;;chr12:3806536..3806571,+!p3@Dnmt3a!0.52!10.44!Dnmt3a;;chr3:128902837..128902861,+!p3@Pitx2!0.52!2.32!Pitx2;;chr2:74550015..74550057,+!p2@Hoxd3!0.52!2.32!Hoxd3;;chr5:67490474..67490494,-!p2@Phox2b!0.52!2.32!Phox2b;;chr13:30077847..30077906,-!p1@E2f3!0.51!22.42!E2f3;;chr11:74981654..74981658,-!p1@Hic1!0.51!11.21!Hic1;;chr18:11052456..11052477,+!p3@Gata6!0.51!8.63!Gata6;;chr11:85646263..85646278,+!p2@Tbx2!0.51!6.96!Tbx2;;chr7:116154364..116154444,+!p1@Tub!0.51!4.38!Tub;;chr6:52176164..52176195,-!p1@Hoxa9!0.51!2.96!Hoxa9;;chr11:18918959..18918976,-!p2@Meis1!0.50!38.79!Meis1;;chr12:34642510..34642530,+!p1@Twist1!0.50!8.51!Twist1;;chr11:101755669..101755686,-!p1@Meox1!0.50!4.51!Meox1;;chr15:37162796..37162828,+!p1@Grhl2!0.50!4.12!Grhl2;;chr1:194979361..194979373,+!p2@Irf6!0.50!3.22!Irf6;;chr15:102865048..102865073,+!p3@H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201,-!p2@Tox3!0.18!1.55!Tox3;;chr3:30408674..30408716,-!p2@Mecom!0.18!1.42!Mecom;;chr15:50721211..50721234,-!p6@Trps1!0.18!1.42!Trps1;;chr15:100382267..100382287,-!p3@Tfcp2!0.18!1.42!Tfcp2;;chr11:121380640..121380655,-!p1@Zfp750!0.18!1.42!Zfp750;;chr17:37139455..37139469,+!p3@Zfp57!0.18!1.29!Zfp57;;chr14:52634651..52634678,-!p7@Zfp219!0.18!1.29!Zfp219;;chr11:62271274..62271337,-!p4@Ncor1!0.18!1.16!Ncor1;;chr19:19185697..19185711,-!p2@Rorb!0.18!0.90!Rorb;;chr3:133207369..133207376,-!p3@Tet2!0.18!0.90!Tet2;;chr4:154011072..154011095,-!p6@Prdm16!0.18!0.77!Prdm16;;chr15:40486854..40486867,+!p7@Zfpm2!0.18!0.77!Zfpm2;;chr6:6832076..6832092,-!p1@Dlx5!0.18!0.77!Dlx5;;chr17:37139519..37139531,+!p5@Zfp57!0.18!0.77!Zfp57;;chr1:194979301..194979310,+!p4@Irf6!0.18!0.77!Irf6;;chr14:22806778..22806795,-!p5@Zfp503!0.18!0.64!Zfp503;;chr12:3806003..3806031,+!p11@Dnmt3a!0.18!0.52!Dnmt3a;;chr12:37835219..37835230,+!p5@Meox2!0.18!0.52!Meox2;;chr14:17407671..17407684,-!p7@Rarb!0.18!0.52!Rarb;;chr12:28027256..28027282,-!p2@Sox11!0.18!0.52!Sox11;;chr14:98568502..98568516,-!p7@Dach1!0.18!0.52!Dach1;;chr12:30219426..30219506,+!p2@Myt1l!0.18!0.52!Myt1l;;chr14:34791937..34791977,-!p1@Zfp488!0.18!0.52!Zfp488;;chr15:102820912..102820923,+!p5@Hoxc8!0.18!0.52!Hoxc8;;chr13:83643159..83643226,+!p3@Mef2c!0.18!0.52!Mef2c;;chr12:58647114..58647128,-!p2@Foxa1!0.18!0.52!Foxa1;;chr15:102797225..102797243,+!p2@Hoxc10!0.18!0.52!Hoxc10;;chr2:104966465..104966479,+!p6@Wt1!0.18!0.52!Wt1;;chr1:57028157..57028173,-!p3@Satb2!0.18!0.52!Satb2;;chr2:180069640..180069660,-!p4@Gata5!0.18!0.52!Gata5;;chr2:32229906..32229942,+!p3@Ciz1!0.18!0.52!Ciz1;;chr1:57028556..57028583,-!p5@Satb2!0.18!0.52!Satb2;;chr2:154395524..154395535,-!p5@E2f1!0.18!0.52!E2f1;;chr2:172375081..172375105,+!p1@Tfap2c!0.18!0.52!Tfap2c;;chr2:147872074..147872079,-!p4@Foxa2!0.18!0.52!Foxa2;;chr3:128918394..128918413,+!p5@Pitx2!0.18!0.52!Pitx2;;chr3:90046983..90046994,-!p6@Creb3l4!0.18!0.52!Creb3l4;;chr3:5218819..5218830,+!p10@Zfhx4!0.18!0.52!Zfhx4;;chr3:29912271..29912291,-!p16@Mecom!0.18!0.52!Mecom;;chr4:150503544..150503561,-!p8@Camta1!0.18!0.52!Camta1;;chr4:102792066..102792069,+!p14@Mier1!0.18!0.52!Mier1;;chr2:75543089..75543122,-!p3@Nfe2l2!0.18!0.52!Nfe2l2;;chr4:87452236..87452249,-!p9@Mllt3!0.18!0.52!Mllt3;;chr4:97248473..97248496,+!p16@Nfia!0.18!0.52!Nfia;;chr2:74560109..74560131,+!p1@Hoxd4!0.18!0.52!Hoxd4;;chr4:84321280..84321298,-!p5@Bnc2!0.18!0.52!Bnc2;;chr4:87452167..87452178,-!p8@Mllt3!0.18!0.52!Mllt3;;chr7:38554684..38554696,-!p10@Zfp536!0.18!0.52!Zfp536;;chr9:59797525..59797538,-!p2@Nr2e3!0.18!0.52!Nr2e3;;chr16:43247391..43247422,+!p12@Zbtb20!0.18!0.52!Zbtb20;;chr16:38294929..38294940,-!p2@Nr1i2!0.18!0.52!Nr1i2;;chr18:84256138..84256150,-!p7@Tshz1!0.18!0.52!Tshz1;;chr16:14705746..14705761,+!p4@Snai2!0.18!0.52!Snai2;;chr5:77544170..77544181,-!p6@Hopx!0.18!0.52!Hopx;;chr6:52190858..52190873,-!p4@Hoxa10!0.18!0.52!Hoxa10;;chr5:115420882..115420896,-!p3@Hnf1a!0.18!0.52!Hnf1a;;chr5:144951136..144951139,+!p2@Bhlha15!0.18!0.52!Bhlha15;;chr6:52133827..52133854,-!p2@Hoxa3!0.18!0.52!Hoxa3;;chr7:119885539..119885574,+!p3@Tead1!0.18!0.52!Tead1;;chr6:16848460..16848471,-!p5@Tfec!0.18!0.52!Tfec;;chr11:96145537..96145556,+!p6@Hoxb7!0.18!0.52!Hoxb7;;chr11:120624106..120624107,+!p13@Hmga1-rs1,p14@Hmga1!0.18!0.52!Hmga1;;chr11:96143728..96143745,+!p4@Hoxb8!0.18!0.52!Hoxb8;;chr11:83666422..83666446,+!p4@Hnf1b!0.18!0.52!Hnf1b;;chr11:97524329..97524348,+!p6@Mllt6!0.18!0.52!Mllt6;;chr4:149655682..149655742,+!p1@Rere!0.17!42.01!Rere;;chr8:107821563..107821642,+!p1@E2f4!0.17!37.37!E2f4;;chr17:57074836..57074927,-!p1@Mllt1!0.17!36.08!Mllt1;;chr17:32501375..32501433,-!p1@Wiz!0.17!31.06!Wiz;;chr5:111082367..111082441,-!p1@Noc4l!0.17!30.67!Noc4l;;chr8:28087609..28087634,+!p1@Zfp703!0.17!29.77!Zfp703;;chr19:41557122..41557178,+!p1@Lcor!0.17!27.19!Lcor;;chr10:80040030..80040072,-!p1@Klf16!0.17!25.77!Klf16;;chr8:86590723..86590781,+!p1@Rfx1!0.17!24.10!Rfx1;;chr12:3807017..3807063,+!p1@Dnmt3a!0.17!21.26!Dnmt3a;;chr5:34163344..34163484,+!p1@Whsc1!0.17!20.36!Whsc1;;chr8:124806017..124806040,+!p2@Zfpm1!0.17!14.18!Zfpm1;;chr4:116480137..116480178,-!p1@Toe1!0.17!14.05!Toe1;;chr17:31701694..31701799,+!p1@Pknox1!0.17!13.79!Pknox1;;chr7:28516417..28516460,+!p1@Zfp60!0.17!10.70!Zfp60;;chr10:79862134..79862173,-!p3@Mbd3!0.17!9.92!Mbd3;;chr7:77511234..77511302,-!p2@Nr2f2!0.17!8.25!Nr2f2;;chr6:133985657..133985707,+!p3@Etv6!0.17!6.70!Etv6;;chr6:65728988..65729056,+!p1@Prdm5!0.17!5.80!Prdm5;;chr7:148513409..148513455,-!p2@Deaf1!0.17!5.54!Deaf1;;chr11:83943060..83943082,-!p2@Tada2a!0.17!5.41!Tada2a;;chr7:135020438..135020468,+!p1@Zfp646!0.17!5.03!Zfp646;;chr3:14578786..14578807,+!p2@E2f5!0.17!4.25!E2f5;;chr8:81923412..81923431,-!p2@Smad1!0.17!4.12!Smad1;;chr4:150482563..150482655,-!p2@Camta1!0.17!3.99!Camta1;;chr18:79306158..79306249,-!p1@Setbp1!0.17!3.74!Setbp1;;chr11:5761871..5761882,+!p3@Aebp1!0.17!2.71!Aebp1;;chr12:34642682..34642753,+!p2@Twist1!0.17!2.71!Twist1;;chr11:102179350..102179375,-!p7@Ubtf!0.17!1.80!Ubtf;;chr2:35960919..35960954,-!p1@Lhx6!0.17!1.68!Lhx6;;chr11:97524680..97524700,+!p3@Mllt6!0.17!1.16!Mllt6;;chr14:65977415..65977426,+!p6@Zfp395!0.17!1.16!Zfp395;;chr2:32219200..32219213,+!p5@Ciz1!0.17!0.90!Ciz1;;chr2:152223852..152223872,-!p7@Sox12!0.17!0.90!Sox12;;chr12:54349410..54349461,+!p1@Npas3!0.17!0.77!Npas3;;chr14:52936049..52936057,-!p6@Sall2!0.17!0.77!Sall2;;chr15:50721503..50721514,-!p15@Trps1!0.17!0.77!Trps1;;chr6:14851547..14851571,+!p7@Foxp2!0.17!0.77!Foxp2;;chr7:123177120..123177138,-!p10@Sox6!0.17!0.77!Sox6;;chr6:128312812..128312821,+!p5@Foxm1!0.17!0.64!Foxm1;;chr2:115890495..115890507,-!p16@Meis2!0.17!0.64!Meis2;;chr2:152223762..152223777,-!p8@Sox12!0.17!0.64!Sox12;;chr17:84587279..84587294,-!p1@Zfp36l2!0.16!139.95!Zfp36l2;;chr8:13338760..13338817,+!p1@Tfdp1!0.16!44.46!Tfdp1;;chr7:30880169..30880211,+!p1@Zfp260!0.16!41.62!Zfp260;;chr2:119722948..119723028,+!p1@Mga!0.16!37.11!Mga;;chr5:138558139..138558214,+!p1@Zscan21!0.16!35.18!Zscan21;;chr8:13869673..13869740,+!p1@Zfp828!0.16!30.93!Zfp828;;chrX:45947560..45947670,-!p1@Zfp280c!0.16!23.84!Zfp280c;;chr11:83943084..83943122,-!p1@Tada2a!0.16!19.20!Tada2a;;chr17:4994286..4994373,+!p2@Arid1b!0.16!13.53!Arid1b;;chr10:107769168..107769215,+!p1@Pawr!0.16!12.63!Pawr;;chr7:13483149..13483234,+!p1@Zscan22!0.16!11.98!Zscan22;;chr13:42147384..42147441,+!p1@Hivep1!0.16!11.86!Hivep1;;chr8:108160490..108160512,+!p2@Ctcf!0.16!10.05!Ctcf;;chr7:30739068..30739108,-!p1@Zfp74!0.16!9.15!Zfp74;;chr17:71199121..71199165,-!p2@Tgif1!0.16!8.63!Tgif1;;chr14:98568761..98568814,-!p2@Dach1!0.16!8.12!Dach1;;chr7:50834947..50835010,+!p2@Zfp719!0.16!6.19!Zfp719;;chr17:46693153..46693169,-!p2@Srf!0.16!5.93!Srf;;chr13:67274092..67274140,+!p1@Rsl1!0.16!3.87!Rsl1;;chr7:134489096..134489123,-!p2@Zfp768!0.16!3.22!Zfp768;;chr18:80348151..80348181,-!p2@Adnp2!0.16!2.58!Adnp2;;chr17:27693706..27693724,+!p4@Hmga1,p5@Hmga1-rs1!0.16!2.45!Hmga1;;chr8:111227738..111227793,+!p@chr8:111227738..111227793,+!0.16!2.45!Zfhx3;;chr4:58956447..58956510,+!p1@Zkscan16!0.16!2.06!Zkscan16;;chr2:91077034..91077078,-!p2@Ddb2!0.16!2.06!Ddb2;;chr7:148514080..148514108,-!p4@Deaf1!0.16!1.93!Deaf1;;chr11:18918982..18918993,-!p5@Meis1!0.16!1.93!Meis1;;chr17:3557785..3557797,-!p3@Tfb1m!0.16!1.68!Tfb1m;;chr5:147760297..147760304,+!p4@Gtf3a!0.16!1.55!Gtf3a;;chr7:56136402..56136420,-!p3@E2f8!0.16!1.55!E2f8;;chr4:133309830..133309841,-!p10@Arid1a!0.16!1.42!Arid1a;;chr15:61818593..61818614,+!p4@Myc!0.16!1.42!Myc;;chr7:19945089..19945107,+!p2@Ppp1r13l!0.16!1.29!Ppp1r13l;;chr7:4947625..4947634,-!p6@Zfp579!0.16!1.29!Zfp579;;chr7:119822915..119822936,+!p5@Tead1!0.16!1.29!Tead1;;chr12:9581317..9581333,+!p3@Osr1!0.16!1.16!Osr1;;chr3:103772552..103772584,+!p2@Phtf1!0.16!1.16!Phtf1;;chr11:99092280..99092302,-!p3@Smarce1!0.16!1.16!Smarce1;;chr1:165243591..165243625,-!p2@Prrx1!0.16!1.16!Prrx1;;chr17:32525943..32525992,-!p4@Wiz!0.16!1.16!Wiz;;chr6:53523332..53523343,+!p2@Creb5!0.16!1.03!Creb5;;chr7:134519473..134519502,-!p3@Zfp747!0.16!0.90!Zfp747;;chr5:120120981..120120992,+!p5@Tbx3!0.16!0.90!Tbx3;;chr6:144157924..144157955,-!p2@Sox5!0.16!0.77!Sox5;;chr2:168427252..168427273,-!p2@Nfatc2!0.16!0.77!Nfatc2;;chrX:48559194..48559210,-!p4@Mbnl3!0.16!0.77!Mbnl3;;chr18:53623836..53623839,+!p1@Prdm6!0.16!0.64!Prdm6;;chr11:23978229..23978268,+!p8@Bcl11a!0.16!0.64!Bcl11a;;chr14:99698164..99698208,+!p2@Klf5!0.16!0.64!Klf5;;chr4:150513630..150513686,-!p4@Camta1!0.16!0.64!Camta1;;chr9:32349174..32349187,-!p6@Fli1!0.16!0.64!Fli1;;chr1:135557922..135557963,-!p1@Zc3h11a!0.15!145.88!Zc3h11a;;chr11:99091744..99091778,-!p1@Smarce1!0.15!53.74!Smarce1;;chr8:124900511..124900552,+!p1@Zc3h18!0.15!45.10!Zc3h18;;chr1:170362273..170362317,-!p1@Pbx1!0.15!35.70!Pbx1;;chr4:82151653..82151706,-!p2@Nfib!0.15!35.18!Nfib;;
@@ Line 45: / Line 45: @@
 |is_obsolete=
 |library_id=CNhs10602
-|library_id_phase_based=1:CNhs10602
+|library_id_phase_based=2:CNhs10602
 |name=intestine, embryo E15
 |namespace=FANTOM5
@@ Line 51: / Line 51: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10602,LSID654,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=-0.00980014126705755,0,0,0,0,0.0297469626626906,-0.227761878805721,0,0,0,0,0.436748386842742,0,0,0,0,0,0,-0.0113460516537959,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.110622409307073,0,0,0,0.334414974944823,0,0.0205644265210278,0.0491985046571506,0.00258239464335652,0.315590377186536,0.368675925008774,0,0,0,0,0,0,0,0,0,0,0,0,0.149985362583204,0,0,0,0,-0.0428469550828748,0,0,0,0.0526429550379996,0,0.0678679092571771,-0.094659747192742,0.121135962033847,-0.0240925561339037,0,0.0526429550379996,0.0189729621390662,0,0.0526429550379996,0,0.0351692922429929,-0.0087020731268271,-0.168546125365801,0.0207575249947466,0,0,0,0,0,0,-0.164494017996533,-0.364443923572355,-0.053812092084755,0,0,0,0,0

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FF:976-16D8: Difference between revisions

From FANTOM5_SSTAR

Revision as of 11:19, 28 November 2014

CNhs10602

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0