FF:790-21I1: Difference between revisions

Revision as of 11:17, 28 November 2014

Name:	small intestine, neonate N16
Species:	Mouse (Mus musculus)
Library ID:	CNhs11114
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	C57BL/6J
tissue	small intestine
dev stage	16 days neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005746

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11114		CAGE		DRX009082		DRR009956

Accession ID Mm9

Library id		BAM		CTSS
CNhs11114		DRZ001381		DRZ002764

Download raw sequence, BAM & CTSS

Mm9

BAM	CTSS
[{{{mm9bam}}} download]	[{{{mm9ctss}}} donwload]

Mm10

BAM	CTSS
[{{{mm10bam}}} download]	[{{{mm10ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11114

0	0
1	0
10	0
100	0
1000	0.0184
1001	0.0162
1002	0.0386
1003	-0.0773
1004	0
1005	0.199
1006	0
1007	-0.102
1008	1.681
1009	-5.040489e-4
101	-0.0723
1010	0
1011	-0.138
1012	0
1013	0.213
1014	-0.0874
1015	-0.221
1016	-0.13
1017	0
1018	0.336
1019	0
102	0
1020	0
1021	-0.0487
1022	0.129
1023	0
1024	0.0285
1025	0.695
1026	0
1027	0
1028	0
1029	0.408
103	0.111
1030	0
1031	-0.0553
1032	0.467
1033	-0.0525
1034	0.187
1035	0
1036	-0.0718
1037	0
1038	0.0374
1039	-0.0755
104	0
1040	-0.101
1041	0.111

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11114

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0359
MA0003.1	MA0003.1	0.141
MA0004.1	MA0004.1	0.885
MA0006.1	MA0006.1	0.0423
MA0007.1	MA0007.1	0.787
MA0009.1	MA0009.1	0.31
MA0014.1	MA0014.1	0.756
MA0017.1	MA0017.1	5.83808e-24
MA0018.2	MA0018.2	0.00708
MA0019.1	MA0019.1	0.269
MA0024.1	MA0024.1	0.027
MA0025.1	MA0025.1	0.421
MA0027.1	MA0027.1	0.629
MA0028.1	MA0028.1	0.205
MA0029.1	MA0029.1	0.924
MA0030.1	MA0030.1	0.838
MA0031.1	MA0031.1	0.513
MA0035.2	MA0035.2	1.08189e-5
MA0038.1	MA0038.1	0.313
MA0039.2	MA0039.2	0.00439
MA0040.1	MA0040.1	0.152
MA0041.1	MA0041.1	0.417
MA0042.1	MA0042.1	0.924
MA0043.1	MA0043.1	0.0241
MA0046.1	MA0046.1	2.5385e-39
MA0047.2	MA0047.2	0.00819
MA0048.1	MA0048.1	0.548
MA0050.1	MA0050.1	9.18089e-8
MA0051.1	MA0051.1	7.69406e-6
MA0052.1	MA0052.1	1.02148e-4
MA0055.1	MA0055.1	0.307
MA0057.1	MA0057.1	0.206
MA0058.1	MA0058.1	0.711
MA0059.1	MA0059.1	0.829
MA0060.1	MA0060.1	6.57373e-5
MA0061.1	MA0061.1	0.455
MA0062.2	MA0062.2	0.135
MA0065.2	MA0065.2	5.67062e-14
MA0066.1	MA0066.1	0.0746
MA0067.1	MA0067.1	0.177
MA0068.1	MA0068.1	0.254
MA0069.1	MA0069.1	0.0688
MA0070.1	MA0070.1	0.248
MA0071.1	MA0071.1	0.56
MA0072.1	MA0072.1	0.49
MA0073.1	MA0073.1	0.846
MA0074.1	MA0074.1	0.089
MA0076.1	MA0076.1	0.0891
MA0077.1	MA0077.1	0.33
MA0078.1	MA0078.1	0.413
MA0079.2	MA0079.2	0.493
MA0080.2	MA0080.2	0.00175
MA0081.1	MA0081.1	0.412
MA0083.1	MA0083.1	0.703
MA0084.1	MA0084.1	0.774
MA0087.1	MA0087.1	0.861
MA0088.1	MA0088.1	0.806
MA0090.1	MA0090.1	0.711
MA0091.1	MA0091.1	0.837
MA0092.1	MA0092.1	0.27
MA0093.1	MA0093.1	0.829
MA0099.2	MA0099.2	0.0118
MA0100.1	MA0100.1	0.0787
MA0101.1	MA0101.1	0.827
MA0102.2	MA0102.2	0.367
MA0103.1	MA0103.1	9.19708e-6
MA0104.2	MA0104.2	0.134
MA0105.1	MA0105.1	0.202
MA0106.1	MA0106.1	0.564
MA0107.1	MA0107.1	0.785
MA0108.2	MA0108.2	0.546
MA0111.1	MA0111.1	0.933
MA0112.2	MA0112.2	9.6604e-6
MA0113.1	MA0113.1	0.774
MA0114.1	MA0114.1	8.60702e-27
MA0115.1	MA0115.1	8.8833e-11
MA0116.1	MA0116.1	0.337
MA0117.1	MA0117.1	0.989
MA0119.1	MA0119.1	0.0411
MA0122.1	MA0122.1	0.529
MA0124.1	MA0124.1	0.529
MA0125.1	MA0125.1	0.121
MA0131.1	MA0131.1	0.378
MA0135.1	MA0135.1	0.5
MA0136.1	MA0136.1	0.0194
MA0137.2	MA0137.2	0.738
MA0138.2	MA0138.2	0.59
MA0139.1	MA0139.1	0.0213
MA0140.1	MA0140.1	0.0316
MA0141.1	MA0141.1	1.6646e-4
MA0142.1	MA0142.1	0.19
MA0143.1	MA0143.1	0.118
MA0144.1	MA0144.1	0.144
MA0145.1	MA0145.1	0.00953
MA0146.1	MA0146.1	0.245
MA0147.1	MA0147.1	0.191
MA0148.1	MA0148.1	5.56287e-5
MA0149.1	MA0149.1	0.0255
MA0150.1	MA0150.1	0.935
MA0152.1	MA0152.1	0.224
MA0153.1	MA0153.1	1.97305e-31
MA0154.1	MA0154.1	0.0129
MA0155.1	MA0155.1	0.12
MA0156.1	MA0156.1	0.155
MA0157.1	MA0157.1	0.8
MA0159.1	MA0159.1	0.00169
MA0160.1	MA0160.1	0.016
MA0162.1	MA0162.1	0.238
MA0163.1	MA0163.1	0.00536
MA0164.1	MA0164.1	0.83
MA0258.1	MA0258.1	0.00939
MA0259.1	MA0259.1	0.246

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11114

Novel motif	Logo	P-value
1	1	0.19
10	10	0.21
100	100	0.855
101	101	0.853
102	102	0.785
103	103	0.195
104	104	0.865
105	105	0.468
106	106	0.00706
107	107	0.0161
108	108	0.748
109	109	0.0552
11	11	0.16
110	110	0.262
111	111	0.0364
112	112	0.0258
113	113	0.497
114	114	0.0512
115	115	0.557
116	116	0.283
117	117	0.404
118	118	0.36
119	119	0.146
12	12	0.875
120	120	0.731
121	121	0.939
122	122	0.572
123	123	0.229
124	124	0.878
125	125	0.276
126	126	0.073
127	127	0.38
128	128	0.0434
129	129	0.42
13	13	0.00414
130	130	0.826
131	131	0.0373
132	132	0.481
133	133	0.556
134	134	0.548
135	135	0.829
136	136	0.135
137	137	0.506
138	138	0.333
139	139	0.0579
14	14	0.779
140	140	0.555
141	141	0.146
142	142	0.611
143	143	0.327
144	144	0.547
145	145	0.0834
146	146	0.193
147	147	0.275
148	148	0.14
149	149	0.301
15	15	0.171
150	150	0.241
151	151	0.447
152	152	0.0358
153	153	0.681
154	154	0.554
155	155	0.185
156	156	0.824
157	157	0.682
158	158	0.681
159	159	0.477
160	160	0.209
161	161	0.41
162	162	0.951
163	163	0.489
164	164	0.112
165	165	0.455
166	166	0.732
167	167	0.907
168	168	0.965
169	169	0.00605
17	17	0.0732
18	18	0.0919
19	19	0.0676
2	2	0.192
20	20	0.696
21	21	0.939
22	22	0.278
23	23	0.212
24	24	0.599
25	25	0.892
26	26	0.00812
27	27	0.576
28	28	0.55
29	29	0.418
3	3	0.218
30	30	0.396
31	31	0.616
32	32	0.00265
33	33	0.208
34	34	0.725
35	35	0.56
36	36	0.996
37	37	0.0437
38	38	0.37
39	39	0.201
4	4	0.429
40	40	0.412
41	41	0.633
42	42	0.47
43	43	0.22
44	44	0.247
45	45	0.336
46	46	0.265
47	47	0.438
48	48	0.335
49	49	0.166
5	5	0.585
50	50	0.493
51	51	0.579
52	52	0.0552
53	53	0.948
54	54	0.698
55	55	0.533
56	56	0.359
57	57	0.996
58	58	0.5
59	59	0.0819
6	6	0.897
60	60	0.0386
61	61	0.347
62	62	0.461
63	63	0.15
64	64	0.627
65	65	0.136
66	66	0.35
67	67	0.644
68	68	0.126
69	69	0.9
7	7	0.0915
70	70	0.0316
71	71	0.0979
72	72	0.587
73	73	0.121
74	74	0.938
75	75	0.152
76	76	0.848
77	77	0.0735
78	78	0.0658
79	79	0.521
8	8	0.267
80	80	0.719
81	81	0.709
82	82	0.0765
83	83	0.568
84	84	0.355
85	85	0.0188
86	86	0.143
87	87	0.238
88	88	0.68
89	89	0.308
9	9	0.564
90	90	0.208
91	91	0.254
92	92	0.16
93	93	0.803
94	94	0.727
95	95	0.204
96	96	0.623
97	97	0.485
98	98	0.803
99	99	0.0442

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11114

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011425 mouse small intestine- neonate N16 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0002108 (small intestine)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000306 (mouse neonate N16 sample)
0011425 (mouse small intestine- neonate N16 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:3634145..3634161,+!p1@Hnf4g!2.59!384.17!Hnf4g;;chr10:80555320..80555378,-!p1@Creb3l3!2.21!183.63!Creb3l3;;chr5:148118639..148118715,-!p1@Cdx2!2.15!140.49!Cdx2;;chr16:38294860..38294924,-!p1@Nr1i2!2.02!103.77!Nr1i2;;chr2:163372884..163372904,+!p1@Hnf4a!1.97!91.82!Hnf4a;;chr10:88969376..88969395,-!p1@Nr1h4!1.96!91.23!Nr1h4;;chr1:137155026..137155042,-!p1@Elf3!1.92!455.00!Elf3;;chr2:163332558..163332596,+!p2@Hnf4a!1.72!51.30!Hnf4a;;chr8:77396591..77396639,+!p1@Isx!1.64!42.56!Isx;;chr6:86619104..86619119,-!p1@Mxd1!1.56!275.45!Mxd1;;chr2:180069370..180069409,-!p1@Gata5!1.56!40.81!Gata5;;chr3:3508024..3508069,+!p2@Hnf4g!1.54!33.81!Hnf4g;;chr18:61195843..61195864,-!p2@Cdx1!1.54!33.52!Cdx1;;chr5:135582751..135582788,+!p1@Mlxipl!1.51!120.67!Mlxipl;;chr14:63864056..63864102,-!p1@Gata4!1.48!49.84!Gata4;;chr17:28408632..28408682,+!p1@1810013A23Rik,p4@Ppard!1.47!28.57!Ppard;;chr15:97738692..97738747,-!p1@Vdr!1.44!140.49!Vdr;;chr1:173144100..173144138,+!p2@Nr1i3!1.44!26.82!Nr1i3;;chr2:164228702..164228719,+!p1@Rbpjl!1.44!26.82!Rbpjl;;chr2:103123925..103123959,-!p3@Ehf!1.44!26.23!Ehf;;chr6:64679112..64679126,+!p1@Atoh1!1.43!25.65!Atoh1;;chr18:61195865..61195880,-!p1@Cdx1!1.41!24.48!Cdx1;;chr5:148118840..148118857,-!p2@Cdx2!1.40!24.19!Cdx2;;chr17:27865882..27865901,-!p1@Spdef!1.38!22.74!Spdef;;chr8:77397095..77397127,+!p2@Isx!1.36!22.15!Isx;;chr19:43686789..43686811,+!p1@Nkx2-3!1.35!21.57!Nkx2-3;;chr7:19608891..19608895,-!p1@Foxa3!1.30!24.48!Foxa3;;chr8:77397492..77397514,+!p3@Isx!1.29!18.65!Isx;;chr14:99697871..99697934,+!p1@Klf5!1.28!346.28!Klf5;;chr5:138187583..138187602,+!p6@Tsc22d4!1.28!32.65!Tsc22d4;;chr10:22539932..22539956,-!p1@Tcf21!1.27!46.35!Tcf21;;chr19:5560600..5560617,-!p1@Ovol1!1.23!19.53!Ovol1;;chr7:148452314..148452329,-!p1@Irf7!1.22!107.56!Irf7;;chr5:115421065..115421088,-!p1@Hnf1a!1.22!15.45!Hnf1a;;chr17:28409136..28409150,+!p3@Ppard!1.21!15.16!Ppard;;chr18:11052485..11052508,+!p2@Gata6!1.20!41.39!Gata6;;chr18:64499674..64499696,+!p1@Onecut2!1.20!25.65!Onecut2;;chr18:64499706..64499721,+!p2@Onecut2!1.20!20.70!Onecut2;;chr10:80555398..80555409,-!p2@Creb3l3!1.18!13.99!Creb3l3;;chr5:144951153..144951203,+!p1@Bhlha15!1.17!19.82!Bhlha15;;chr3:3508005..3508021,+!p3@Hnf4g!1.17!13.70!Hnf4g;;chr8:77396650..77396662,+!p4@Isx!1.17!13.70!Isx;;chr8:123608252..123608268,+!p1@Foxf1a!1.15!19.53!Foxf1a;;chr1:173144144..173144176,+!p1@Nr1i3!1.14!12.83!Nr1i3;;chr13:31650185..31650201,+!p1@Foxq1!1.13!43.43!Foxq1;;chr8:77397190..77397202,+!p5@Isx!1.12!12.24!Isx;;chr1:165219345..165219366,-!p7@Prrx1!1.12!12.24!Prrx1;;chr5:148118792..148118806,-!p3@Cdx2!1.11!11.95!Cdx2;;chr15:35225845..35225867,+!p1@Osr2!1.10!29.15!Osr2;;chr2:173044380..173044432,-!p1@Zbp1!1.10!27.69!Zbp1;;chr2:163372869..163372882,+!p3@Hnf4a!1.10!11.66!Hnf4a;;chr5:120121020..120121049,+!p1@Tbx3!1.07!66.17!Tbx3;;chr4:55545051..55545110,-!p2@Klf4!1.07!13.41!Klf4;;chr3:30039329..30039355,-!p5@Mecom!1.07!10.78!Mecom;;chr13:31717548..31717596,+!p1@Foxf2!1.05!20.40!Foxf2;;chr4:148178559..148178603,+!p1@Casz1!1.04!28.86!Casz1;;chr4:55545337..55545357,-!p1@Klf4!1.02!141.08!Klf4;;chr8:118231678..118231692,-!p2@Maf!1.01!85.11!Maf;;chr5:120121446..120121461,+!p2@Tbx3!1.01!30.90!Tbx3;;chr6:39068163..39068176,-!p2@Parp12!1.01!17.78!Parp12;;chr14:32978970..32978984,+!p2@Gm6768,p2@Ncoa4!1.00!14.28!Ncoa4;;chr5:148118614..148118625,-!p4@Cdx2!1.00!9.04!Cdx2;;chr11:57645506..57645523,-!p1@Hand1!1.00!9.04!Hand1;;chr1:138857048..138857071,-!p2@Nr5a2!0.99!8.74!Nr5a2;;chr5:148118809..148118832,-!p5@Cdx2!0.99!8.74!Cdx2;;chr2:103143336..103143367,-!p1@Ehf!0.98!13.99!Ehf;;chr1:194979315..194979359,+!p1@Irf6!0.97!52.76!Irf6;;chr3:94176733..94176794,+!p1@Rorc!0.96!64.71!Rorc;;chr10:127095407..127095440,+!p3@Stat6!0.96!10.20!Stat6;;chr8:77397169..77397182,+!p7@Isx!0.96!8.16!Isx;;chr12:86814833..86814846,+!p1@Fos!0.95!191.21!Fos;;chr3:89197057..89197114,-!p1@Zbtb7b!0.95!27.40!Zbtb7b;;chr14:63890519..63890539,-!p3@Gata4!0.95!7.87!Gata4;;chr2:180069640..180069660,-!p4@Gata5!0.93!7.58!Gata5;;chr14:63890545..63890560,-!p5@Gata4!0.92!7.29!Gata4;;chr19:6996243..6996293,-!p1@Esrra!0.91!81.61!Esrra;;chr18:11052642..11052659,+!p1@Gata6!0.91!37.89!Gata6;;chr3:90046995..90047031,-!p2@Creb3l4!0.91!9.04!Creb3l4;;chr10:20880629..20880683,-!p1@Myb!0.90!20.99!Myb;;chr1:135557526..135557551,-!p1@Zbed6!0.90!11.37!Zbed6;;chr19:5560570..5560582,-!p2@Ovol1!0.90!7.00!Ovol1;;chr1:39250584..39250643,+!p1@Npas2!0.89!35.85!Npas2;;chr8:79426176..79426275,+!p1@Nr3c2!0.89!34.98!Nr3c2;;chr8:59799772..59799789,+!p1@Hand2!0.89!20.40!Hand2;;chr10:88996336..88996380,-!p2@Nr1h4!0.89!8.45!Nr1h4;;chr2:79296783..79296801,-!p1@Neurod1!0.89!6.70!Neurod1;;chr2:166888058..166888105,-!p2@Znfx1!0.88!22.15!Znfx1;;chr7:51787434..51787448,-!p1@Spib!0.87!9.33!Spib;;chr2:180069410..180069421,-!p3@Gata5!0.87!6.41!Gata5;;chr14:76887526..76887555,+!p10@Tsc22d1!0.87!6.41!Tsc22d1;;chr7:17642177..17642223,-!p3@Hif3a!0.87!6.41!Hif3a;;chr8:123260252..123260264,+!p1@Irf8!0.86!46.93!Irf8;;chr10:88996295..88996335,-!p3@Nr1h4!0.85!7.29!Nr1h4;;chr14:63890491..63890516,-!p2@Gata4!0.85!6.12!Gata4;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.84!18.07!Tfcp2l1;;chr4:148178529..148178548,+!p3@Casz1!0.83!14.28!Casz1;;chr1:194979361..194979373,+!p2@Irf6!0.83!7.87!Irf6;;chr10:61595830..61595846,+!p1@Neurog3!0.83!5.83!Neurog3;;chr11:98614335..98614349,+!p8@Thra!0.82!5.54!Thra;;chr5:148081722..148081744,+!p2@Pdx1!0.82!5.54!Pdx1;;chr1:138857076..138857105,-!p1@Nr5a2!0.82!5.54!Nr5a2;;chr8:118231705..118231722,-!p3@Maf!0.81!47.22!Maf;;chr12:58646974..58647003,-!p1@Foxa1!0.81!7.58!Foxa1;;chr4:124805061..124805087,-!p1@Zc3h12a!0.80!17.49!Zc3h12a;;chr19:53384910..53384937,+!p3@Mxi1!0.80!16.03!Mxi1;;chr4:133109285..133109308,+!p1@Nr0b2!0.80!5.25!Nr0b2;;chr1:57029281..57029326,-!p1@Satb2!0.79!8.45!Satb2;;chr5:65213356..65213412,+!p6@Klf3!0.78!11.08!Klf3;;chr3:89197551..89197606,-!p2@Zbtb7b!0.75!17.20!Zbtb7b;;chr17:32506357..32506377,-!p3@Wiz!0.75!10.20!Wiz;;chr6:39068181..39068206,-!p3@Parp12!0.75!10.20!Parp12;;chr7:134519473..134519502,-!p3@Zfp747!0.75!6.41!Zfp747;;chr5:120121091..120121100,+!p7@Tbx3!0.75!5.54!Tbx3;;chr6:99216360..99216372,-!p8@Foxp1!0.75!4.66!Foxp1;;chr5:148081686..148081715,+!p1@Pdx1!0.75!4.66!Pdx1;;chr11:83664334..83664353,+!p2@Hnf1b!0.75!4.66!Hnf1b;;chr11:70500401..70500460,-!p3@Camta2!0.75!4.66!Camta2;;chr13:31717597..31717613,+!p2@Foxf2!0.75!4.66!Foxf2;;chr2:180069423..180069434,-!p2@Gata5!0.75!4.66!Gata5;;chr9:59797503..59797513,-!p3@Nr2e3!0.75!4.66!Nr2e3;;chr2:160192793..160192809,-!p1@Mafb!0.74!74.91!Mafb;;chr18:36441119..36441158,+!p2@Pura!0.74!11.95!Pura;;chr11:53583544..53583559,+!p1@Irf1!0.73!81.61!Irf1;;chr2:77357622..77357704,-!p1@Zfp385b!0.73!12.83!Zfp385b;;chr18:11052606..11052633,+!p4@Gata6!0.73!11.95!Gata6;;chr17:87153519..87153533,+!p5@Epas1!0.73!6.70!Epas1;;chr2:133377954..133377973,+!p1@Bmp2!0.72!15.16!Bmp2;;chr2:173044357..173044377,-!p2@Zbp1!0.72!6.41!Zbp1;;chr7:20408047..20408125,-!p1@Bcl3!0.71!53.05!Bcl3;;chr9:59796270..59796294,-!p4@Nr2e3!0.71!4.08!Nr2e3;;chr10:79884592..79884621,-!p5@Tcf3!0.71!4.08!Tcf3;;chr2:103143315..103143328,-!p2@Ehf!0.71!4.08!Ehf;;chr18:11052456..11052477,+!p3@Gata6!0.70!13.70!Gata6;;chr17:84587167..84587239,-!p2@Zfp36l2!0.69!14.87!Zfp36l2;;chr3:89197216..89197258,-!p3@Zbtb7b!0.69!8.74!Zbtb7b;;chr5:120120667..120120685,+!p3@Tbx3!0.69!8.16!Tbx3;;chr2:70313168..70313184,+!p1@Sp5!0.69!6.12!Sp5;;chr15:85566184..85566238,+!p1@Ppara!0.69!6.12!Ppara;;chr10:30375579..30375616,-!p3@Ncoa7!0.68!9.91!Ncoa7;;chr13:44825008..44825066,+!p5@Jarid2!0.68!8.16!Jarid2;;chr4:55545152..55545194,-!p3@Klf4!0.68!4.66!Klf4;;chr14:76887566..76887579,+!p18@Tsc22d1!0.68!3.79!Tsc22d1;;chr5:67490284..67490302,-!p1@Phox2b!0.68!3.79!Phox2b;;chr5:115421126..115421137,-!p4@Hnf1a!0.68!3.79!Hnf1a;;chr10:80555285..80555291,-!p4@Creb3l3!0.68!3.79!Creb3l3;;chr1:138846079..138846103,-!p6@Nr5a2!0.68!3.79!Nr5a2;;chr17:28409059..28409076,+!p6@Ppard!0.68!3.79!Ppard;;chr13:31650026..31650045,+!p2@Foxq1!0.67!6.70!Foxq1;;chr15:85566051..85566080,+!p4@Ppara!0.67!4.37!Ppara;;chr6:39068210..39068251,-!p1@Parp12!0.66!18.95!Parp12;;chr1:38721792..38721845,-!p1@Aff3!0.66!4.66!Aff3;;chr12:109242266..109242295,-!p1@Bcl11b!0.65!33.52!Bcl11b;;chr11:98636531..98636559,-!p1@Nr1d1!0.65!23.03!Nr1d1;;chr4:154010918..154010931,-!p1@Prdm16!0.65!11.37!Prdm16;;chr15:85566014..85566045,+!p3@Ppara!0.65!4.96!Ppara;;chr9:59797525..59797538,-!p2@Nr2e3!0.65!3.50!Nr2e3;;chr4:151533683..151533698,+!p1@Hes2!0.65!3.50!Hes2;;chr7:150155143..150155156,-!p1@Ascl2!0.65!3.50!Ascl2;;chr12:78063146..78063159,-!p2@Max!0.64!9.91!Max;;chr5:120121169..120121171,+!p4@Tbx3!0.63!6.41!Tbx3;;chr1:138846009..138846038,-!p3@Nr5a2!0.63!3.79!Nr5a2;;chr5:134790276..134790294,-!p7@Gtf2i!0.62!7.87!Gtf2i;;chr10:80598209..80598236,+!p4@Zbtb7a!0.62!5.83!Zbtb7a;;chr1:133904946..133904974,+!p7@Elk4!0.62!5.25!Elk4;;chr17:87153505..87153516,+!p6@Epas1!0.62!4.66!Epas1;;chr19:43686882..43686906,+!p2@Nkx2-3!0.62!3.21!Nkx2-3;;chr2:19367259..19367278,+!p1@Ptf1a!0.62!3.21!Ptf1a;;chr11:100948597..100948637,+!p1@Mlx!0.61!88.61!Mlx;;chr1:135320989..135321043,-!p1@Sox13!0.61!40.52!Sox13;;chr16:87699237..87699279,+!p1@Bach1!0.61!38.18!Bach1;;chr11:53164556..53164567,+!p5@Aff4!0.61!5.25!Aff4;;chr8:124806048..124806094,+!p1@Zfpm1!0.60!32.65!Zfpm1;;chr14:79915425..79915501,+!p1@Elf1!0.60!31.77!Elf1;;chr2:91035197..91035237,-!p1@Nr1h3!0.59!6.70!Nr1h3;;chr2:91035254..91035271,-!p3@Nr1h3!0.59!3.79!Nr1h3;;chr4:44723559..44723593,-!p1@Pax5!0.59!2.91!Pax5;;chr2:75543089..75543122,-!p3@Nfe2l2!0.59!2.91!Nfe2l2;;chr3:128918433..128918448,+!p8@Pitx2!0.59!2.91!Pitx2;;chr7:20213752..20213778,-!p2@Relb!0.59!2.91!Relb;;chr1:194979383..194979393,+!p3@Irf6!0.59!2.91!Irf6;;chr13:31717614..31717628,+!p3@Foxf2!0.59!2.91!Foxf2;;chr11:83664365..83664383,+!p1@Hnf1b!0.59!2.91!Hnf1b;;chr8:81552152..81552208,+!p1@Zfp827!0.58!24.78!Zfp827;;chr4:154010940..154010962,-!p3@Prdm16!0.58!7.00!Prdm16;;chr6:115311030..115311065,+!p4@Pparg!0.58!4.37!Pparg;;chr16:55822241..55822258,-!p1@Nfkbiz!0.57!105.52!Nfkbiz;;chr1:521763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kil;;chr4:135736690..135736705,+!p6@E2f2!0.14!0.58!E2f2;;chr4:150513630..150513686,-!p4@Camta1!0.14!0.58!Camta1;;chr7:38558544..38558566,-!p4@Zfp536!0.14!0.58!Zfp536;;chr6:124662297..124662371,+!p1@Phb2!0.13!242.80!Phb2;;chr6:83299445..83299490,+!p1@Bola3!0.13!51.30!Bola3;;chr10:80040030..80040072,-!p1@Klf16!0.13!23.61!Klf16;;chr6:83391606..83391658,-!p1@Tet3!0.13!20.11!Tet3;;chr3:87329494..87329565,+!p1@Etv3!0.13!18.07!Etv3;;chr1:75188717..75188804,+!p1@ENSMUST00000125384,p1@ENSMUST00000127625,p1@ENSMUST00000131788,p1@ENSMUST00000134233,p1@ENSMUST00000134378,p1@ENSMUST00000145459,p1@ENSMUST00000151887,p1@ENSMUST00000152233!0.13!16.03!Ankzf1;;chr11:72990702..72990737,+!p1@LOC100047518,p1@Tax1bp3!0.13!11.08!Tax1bp3;;chr14:14845141..14845207,+!p1@Atxn7!0.13!7.87!Atxn7;;chr3:94819136..94819168,-!p2@Zfp687!0.13!5.25!Zfp687;;chr2:44968775..44968795,-!p4@Zeb2!0.13!4.96!Zeb2;;chr7:46773114..46773155,+!p1@Zfp619!0.13!3.79!Zfp619;;chr9:72379991..72380014,+!p2@Rfx7!0.13!3.21!Rfx7;;chr14:65568469..65568511,-!p2@Hmbox1!0.13!3.21!Hmbox1;;chr15:102301130..102301147,+!p3@Pcbp2!0.13!2.91!Pcbp2;;chr7:31742079..31742108,-!p4@LOC100504922,p4@Usf2!0.13!2.91!Usf2;;chr18:55152179..55152194,-!p5@Zfp608!0.13!2.62!Zfp608;;chr10:26093876..26093894,-!p2@L3mbtl3!0.13!2.04!L3mbtl3;;chr6:116578939..116578952,-!p2@Zfp422!0.13!2.04!Zfp422;;chr5:22939771..22939797,+!p4@Mll5!0.13!1.75!Mll5;;chr15:75799598..75799619,+!p3@Zfp707!0.13!1.75!Zfp707;;chr17:21145981..21145998,+!p2@Zfp160!0.13!1.46!Zfp160;;chr9:96653241..96653288,-!p1@E030011O05Rik,p5@Zbtb38!0.13!1.46!Zbtb38;;chr5:147760331..147760336,+!p5@Gtf3a!0.13!1.17!Gtf3a;;chr18:3337399..3337422,-!p11@Crem!0.13!1.17!Crem;;chr19:53385060..53385069,+!p6@Mxi1!0.13!0.87!Mxi1;;chr7:87171081..87171101,+!p6@Zfp710!0.13!0.87!Zfp710;;chr13:37870253..37870272,+!p13@Rreb1!0.13!0.87!Rreb1;;chr6:92041506..92041517,+!p5@Nr2c2!0.13!0.87!Nr2c2;;chr6:52167513..52167549,-!p2@Hoxa7!0.13!0.87!Hoxa7;;chr11:96180045..96180059,+!p1@Hoxb4!0.13!0.87!Hoxb4;;chr4:114729646..114729665,+!p4@Tal1!0.13!0.87!Tal1;;chr16:43510301..43510313,+!p24@Zbtb20!0.13!0.58!Zbtb20;;chr2:127308277..127308313,-!p4@Kcnip3!0.13!0.58!Kcnip3;;chr1:87546602..87546617,+!p2@Sp100!0.13!0.58!Sp100;;chr10:62328027..62328038,-!p6@Tet1!0.13!0.58!Tet1;;chr7:123182248..123182264,-!p3@Sox6!0.13!0.58!Sox6;;chr19:5637736..5637766,+!p1@Rela!0.12!31.48!Rela;;chr7:13595144..13595205,-!p1@Zbtb45!0.12!22.74!Zbtb45;;chr6:122769906..122769956,+!p1@Foxj2!0.12!19.24!Foxj2;;chr8:81923316..81923334,-!p1@Smad1!0.12!18.07!Smad1;;chr5:76733756..76733815,-!p1@Clock!0.12!17.78!Clock;;chr7:134758740..134758783,-!p1@Zfp629!0.12!16.32!Zfp629;;chr11:120494853..120494905,-!p1@Mafg!0.12!10.78!Mafg;;chr4:136604692..136604722,-!p1@Zbtb40!0.12!10.49!Zbtb40;;chr11:65620712..65620729,+!p1@Zkscan6!0.12!9.33!Zkscan6;;chr9:71959634..71959702,-!p2@Tcf12!0.12!8.45!Tcf12;;chr10:30522690..30522752,-!p2@Ncoa7!0.12!6.41!Ncoa7;;chr4:120488308..120488366,-!p1@Nfyc!0.12!6.12!Nfyc;;chr2:44968737..44968758,-!p2@Zeb2!0.12!6.12!Zeb2;;chr3:52072296..52072310,+!p3@Foxo1!0.12!5.25!Foxo1;;chr5:31754800..31754825,+!p2@Zfp512!0.12!5.25!Zfp512;;chr14:22807107..22807119,-!p2@Zfp503!0.12!4.37!Zfp503;;chr12:3806536..3806571,+!p3@Dnmt3a!0.12!3.50!Dnmt3a;;chrX:45807450..45807478,-!p3@Elf4!0.12!3.21!Elf4;;chr11:98789099..98789124,+!p3@Rara!0.12!2.91!Rara;;chr10:41996471..41996487,-!p4@Foxo3!0.12!2.62!Foxo3;;chr7:88138585..88138600,+!p2@Zfp592!0.12!2.62!Zfp592;;chrX:103123886..103123922,-!p3@Atrx!0.12!2.33!Atrx;;chr18:7004715..7004731,-!p1@Mkx!0.12!2.04!Mkx;;chr11:23977565..23977612,+!p5@Bcl11a!0.12!1.75!Bcl11a;;chr9:48644429..48644462,-!p3@Zbtb16!0.12!1.46!Zbtb16;;chr5:65194810..65194819,+!p9@Klf3!0.12!1.46!Klf3;;chr7:135381498..135381509,-!p2@9130023H24Rik!0.12!1.17!9130023H24Rik;;chr18:75527210..75527215,+!p4@Smad7!0.12!1.17!Smad7;;chr7:25917492..25917512,-!p1@Pou2f2!0.12!1.17!Pou2f2;;chr8:108583683..108583693,+!p3@Nfatc3!0.12!0.87!Nfatc3;;chr11:87881881..87881887,+!p5@Vezf1!0.12!0.87!Vezf1;;
@@ Line 45: / Line 45: @@
 |is_obsolete=
 |library_id=CNhs11114
-|library_id_phase_based=1:CNhs11114
+|library_id_phase_based=2:CNhs11114
 |name=small intestine, neonate N16
 |namespace=FANTOM5
@@ Line 51: / Line 51: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11114,LSID734,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=0.238218753411684,0,0,0,0,0.0951905929269083,0.271893938813783,0,0,0,0,0.0267487259721393,0,0,0,0,0,0,0.0809787740453802,0,0,0,0,0,0,0.111087966368681,0,0,0,0,0,0,0.194676941704618,0,0,0,0.272872124927955,0,-0.0728866630318486,-0.0332641024162024,0.0914725021723475,-0.33121411926971,0.00300348691760355,0,0,0,0,0,0,0,0,0,0,0.199470399831828,0.111087966368681,0.206866577364514,0,0,0,0,0.111087966368681,0,0.0086280276475245,0,0.199470399831828,0.0180717295851628,0.0378893801919282,0.0249924252487532,0.0413793570607456,0.0069929920982415,0,0,0,-0.0765909511240335,0.272872124927955,0,0,0.084782078581399,0.418075561397741,0.120638804991921,0,0,0,0,0.099735199915914,0.111087966368681,0.389322611593788,0.527582130193121,0.315216705282016,0,0,0,0,0

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FF:790-21I1: Difference between revisions

From FANTOM5_SSTAR

Revision as of 11:17, 28 November 2014

CNhs11114

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0