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{{UBERON
{{UBERON
|id=UBERON:0010885
|alt_id=
|name=hindlimb bone cartilaginous condensation
|namespace=
|def=
|xref=
|is_a=UBERON:0003860;;UBERON:0010881
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0010886
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010885
|is_a=UBERON:0007844 ;;UBERON:0015022
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=hindlimb cartilage element
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002103;;UBERON:0001441;;UBERON:0002103
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 18:10, 12 September 2014

Name:hindlimb cartilage element
Namespace:FANTOM

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0007844(cartilage element),UBERON:0015022(hindlimb endochondral element)
develops_from:UBERON:0010886(hindlimb bone pre-cartilage condensation)
part_of:UBERON:0002103(hindlimb),UBERON:0001441(hindlimb skeleton),UBERON:0002103(hindlimb)



Children

is a:UBERON:0010129 (femur cartilage element)
develops from:UBERON:0003464 (hindlimb bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010885 (hindlimb cartilage element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_73670003b64a6702f1540c5a9683219ep26@Myo18a
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_73670003b64a6702f1540c5a9683219ep26@Myo18a
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_d3c19d49c1c9558458de07c9e4477279p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_d3c19d49c1c9558458de07c9e4477279p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_d3c19d49c1c9558458de07c9e4477279p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_d3c19d49c1c9558458de07c9e4477279p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_d3c19d49c1c9558458de07c9e4477279p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_d3c19d49c1c9558458de07c9e4477279p@chr2:32482372..32482381, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_d8f0ef198d6fdf3ed03b711ef8640e18p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_d8f0ef198d6fdf3ed03b711ef8640e18p@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_eef28f49b75a7d78c54e8b2cdffff8b5p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_eef28f49b75a7d78c54e8b2cdffff8b5p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_e326a4b4d8e48b34d4ad30dd50f33d40p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_e326a4b4d8e48b34d4ad30dd50f33d40p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_e326a4b4d8e48b34d4ad30dd50f33d40p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_e326a4b4d8e48b34d4ad30dd50f33d40p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_e326a4b4d8e48b34d4ad30dd50f33d40p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_e326a4b4d8e48b34d4ad30dd50f33d40p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_e326a4b4d8e48b34d4ad30dd50f33d40p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_e326a4b4d8e48b34d4ad30dd50f33d40p@chr1:174140324..174140335, -
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_1a7fc45218e70192512fe21ccd12cebep@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_1a7fc45218e70192512fe21ccd12cebep@chr1:174143249..174143260, -
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_b78e331dbdd63ff9cd9277c9454b125dp@chr6:51525869..51525891, +
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_b78e331dbdd63ff9cd9277c9454b125dp@chr6:51525869..51525891, +
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_5873085c8857ee7c2c2fed4ab92d4512p3@Asb16
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_5873085c8857ee7c2c2fed4ab92d4512p3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_caa1ed3cc2a4e3b70eb77f18124a78a4p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_caa1ed3cc2a4e3b70eb77f18124a78a4p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_fb4c054991082fc0816d69a9664d3ccbp5@Pla2g5
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_fb4c054991082fc0816d69a9664d3ccbp5@Pla2g5
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_55f26b50963e685f2aa8c2647cb620d5p2@uc009mdq.1
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_55f26b50963e685f2aa8c2647cb620d5p2@uc009mdq.1
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_6c811e01ecb06b2d5ead07bd45c21fc3p3@Mmp9
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_6c811e01ecb06b2d5ead07bd45c21fc3p3@Mmp9
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_300ee2f5b822101d428f4bdeea7491b0p2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_300ee2f5b822101d428f4bdeea7491b0p2@Oscar
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_300ee2f5b822101d428f4bdeea7491b0p@chr1:166815111..166815121, -
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_300ee2f5b822101d428f4bdeea7491b0p@chr1:166815111..166815121, -
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_c6f610bcae7f46e0289f7c667d938718p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_c6f610bcae7f46e0289f7c667d938718p4@Lipc
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_c6f610bcae7f46e0289f7c667d938718p4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_c6f610bcae7f46e0289f7c667d938718p@chr11:75409652..75409664, +
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_640b827d0b39945868df11f45b5a8111p6@Sp7
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_640b827d0b39945868df11f45b5a8111p6@Sp7
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_535ddf6fe1172da80ab760e43ae7cdadp@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_535ddf6fe1172da80ab760e43ae7cdadp@chr18:76271498..76271508, +
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_535ddf6fe1172da80ab760e43ae7cdadp@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_535ddf6fe1172da80ab760e43ae7cdadp@chr8:126415826..126415839, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_0bae85d0944751a6be86bee22092900ep@chr2:32482387..32482399, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_0bae85d0944751a6be86bee22092900ep@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_45666cb475b113dfccca916041b8fbc5p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_45666cb475b113dfccca916041b8fbc5p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_45666cb475b113dfccca916041b8fbc5p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_45666cb475b113dfccca916041b8fbc5p@chr15:58649683..58649688, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_e4cb08c899cd15c7ccfd63d0cd281618p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_e4cb08c899cd15c7ccfd63d0cd281618p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_4c12707f9b90e837565429ce17453081p2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_4c12707f9b90e837565429ce17453081p2@Myoz3
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_0c9f3a99f6cb16673f3eaaf9db2b7b40p2@Myh4
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_0c9f3a99f6cb16673f3eaaf9db2b7b40p2@Myh4
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_2fe84e82c42fc8a05813b6fb52fc74bcp@chr1:57155729..57155740, -
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_2fe84e82c42fc8a05813b6fb52fc74bcp@chr1:57155729..57155740, -
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_2a09caf56322cfd13ce53b2754a09b2ap@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_2a09caf56322cfd13ce53b2754a09b2ap1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_2a09caf56322cfd13ce53b2754a09b2ap@chr11:67056544..67056589, -
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_2a09caf56322cfd13ce53b2754a09b2ap1@Msmp
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_33704a514471d9d4bf8b031b8a7fae5ap@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_33704a514471d9d4bf8b031b8a7fae5ap@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_33704a514471d9d4bf8b031b8a7fae5ap@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_33704a514471d9d4bf8b031b8a7fae5ap@chrY:2858251..2858257, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_7375960d32656e9b07087e1057ad08f0p@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_7375960d32656e9b07087e1057ad08f0p@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_d1b623f2172f8db90a87f0ca9f5785d9p@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_d1b623f2172f8db90a87f0ca9f5785d9p@chr11:67069796..67069817, -
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_6d77f923a1d89f2351b986ea2dca2bf0p@chr8:107702369..107702386, +
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_6d77f923a1d89f2351b986ea2dca2bf0p@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_061214b2ea5f84a1bbc1737f784882efp1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_061214b2ea5f84a1bbc1737f784882efp1@Siglec15
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_a1308cfeab2c129e5d7c776caf64f643p6@Atp2a1
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_a1308cfeab2c129e5d7c776caf64f643p6@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_94e7df005eb7ec31de0aae75f34daf81p7@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_94e7df005eb7ec31de0aae75f34daf81p7@Atp2a1
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_968202a704afafccc53da3e2327a5ccfp@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_968202a704afafccc53da3e2327a5ccfp@chr7:133600635..133600663, +
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_968202a704afafccc53da3e2327a5ccfp@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_968202a704afafccc53da3e2327a5ccfp@chr7:133592162..133592188, -
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_805857c2407129e05222ca1ea66a0e53p4@Sgca
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_805857c2407129e05222ca1ea66a0e53p4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_26039d6921a1311f1c9056e4bea8a3bep1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_26039d6921a1311f1c9056e4bea8a3bep1@Mepe
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_eba29a3ab22f36bff8a1d1add5d339edp2@Tm4sf19
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_eba29a3ab22f36bff8a1d1add5d339edp@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_eba29a3ab22f36bff8a1d1add5d339edp2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_eba29a3ab22f36bff8a1d1add5d339edp@chr12:81581216..81581231, +
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_49fd61f453aed161c9ccc3ad8a0efe8ep5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_49fd61f453aed161c9ccc3ad8a0efe8ep@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_49fd61f453aed161c9ccc3ad8a0efe8ep@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_49fd61f453aed161c9ccc3ad8a0efe8ep5@Col11a2
1.36e-25FFCP PHASE2:Mm9::chr2:180890942..180890956,-#_f2bad890515f5b749030189ec476780dp@chr2:180890942..180890956, -
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_f2bad890515f5b749030189ec476780dp@chr2:180890942..180890956, -

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