UBERON:0008987: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="The functional tissue of the kidney, consisting of the nephrons." [BTO:0003604] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0008987 | |||
|is_a=UBERON:0000353 ;;UBERON:0006554 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=renal parenchyma | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0002113 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="kidney parenchyma" RELATED [BTO:0003604] | ||
|union_of= | |||
|xref=BTO:0003604;;FMA:15574;;SCTID:29704000 | |||
}} | }} | ||
Latest revision as of 18:04, 12 September 2014
| Name: | renal parenchyma | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The functional tissue of the kidney, consisting of the nephrons." [BTO:0003604] | ||
| Xrefs: |
| ||
| Synonyms: | "kidney parenchyma" RELATED [BTO:0003604] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000353(parenchyma),UBERON:0006554(urinary system structure) |
|---|---|
| part_of: | UBERON:0002113(kidney) |
Children
| part of: | UBERON:0001225 (cortex of kidney) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11514-119H2 (Renal Glomerular Endothelial Cells, donor1)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11590-120G6 (Alveolar Epithelial Cells, donor2)
- 11594-120H1 (Renal Glomerular Endothelial Cells, donor2)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
- 11596-120H3 (Renal Cortical Epithelial Cells, donor2)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11675-122H1 (Renal Glomerular Endothelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008987 (renal parenchyma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.8e-58 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_974b5cc73974b3b86f4f122e77cb416f | p@chr2:693380..693398, + |
| 4.8e-58 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_974b5cc73974b3b86f4f122e77cb416f | p@chr2:693380..693398, + |
| 4.05e-52 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_09dd5b476064868a2a5902cac8597572 | p7@HOXA10 |
| 4.05e-52 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_09dd5b476064868a2a5902cac8597572 | p7@HOXA10 |
| 1.06e-50 | FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_aca4cfdafca4e042a6059933203d19c8 | p@chr5:74244100..74244117, + |
| 1.06e-50 | FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_aca4cfdafca4e042a6059933203d19c8 | p@chr5:74244100..74244117, + |
| 5.59e-50 | FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_6b0331ee2d3bbb094079ac2b1905a8d6 | p2@PLA2G2F |
| 5.59e-50 | FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_6b0331ee2d3bbb094079ac2b1905a8d6 | p2@PLA2G2F |
| 6.11e-42 | FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_d2d322dc9077cd034b865f5444d297f8 | p@chr16:86768403..86768437, + |
| 6.11e-42 | FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_d2d322dc9077cd034b865f5444d297f8 | p@chr16:86768403..86768437, + |
| 3.58e-41 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_03f079e8968d3fec3501af383cb65a0e | p4@MEGF11 |
| 3.58e-41 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_03f079e8968d3fec3501af383cb65a0e | p4@MEGF11 |
| 1.0e-40 | FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_979db6e15be2c4ca48dbab65215b57eb | p1@ENST00000413103 |
| 1.0e-40 | FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_979db6e15be2c4ca48dbab65215b57eb | p1@ENST00000413103 |
| 6.83e-40 | FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_3954620d7be11f79e42c2bf1aff09684 | p@chr7:140227303..140227330, - |
| 6.83e-40 | FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_3954620d7be11f79e42c2bf1aff09684 | p@chr7:140227303..140227330, - |
| 9.22e-40 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_d374e94412450ef751fcca02d6d08a93 | p3@PAX2 |
| 9.22e-40 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_d374e94412450ef751fcca02d6d08a93 | p3@PAX2 |
| 1.79e-39 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_0172dbdfcd0b0e6e5274fd791d798070 | p@chr18:3456189..3456200, + |
| 1.79e-39 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_0172dbdfcd0b0e6e5274fd791d798070 | p@chr18:3456189..3456200, + |
| 4.5e-38 | FFCP PHASE2:Hg19::chr6:30890456..30890482,+#_f55a4cbc1ede6337e37fd968f3b95d3e | p11@VARS2 |
| 4.5e-38 | FFCP PHASE1:Hg19::chr6:30890456..30890482,+#_f55a4cbc1ede6337e37fd968f3b95d3e | p11@VARS2 |
| 8.61e-38 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_11e731d33d03d74bc5f296d0e6f54531 | p@chr2:120409486..120409492, + |
| 8.61e-38 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_11e731d33d03d74bc5f296d0e6f54531 | p@chr2:120409486..120409492, + |
| 5.07e-37 | FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_c17907f228b24b02be4de33202edc36b | p2@AB527789 |
| 5.07e-37 | FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_c17907f228b24b02be4de33202edc36b | p2@AB527789 |
| 6.37e-37 | FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_eb41e4a05e94955ce310c82b0109dfa9 | p@chr1:1100457..1100470, + |
| 6.37e-37 | FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_eb41e4a05e94955ce310c82b0109dfa9 | p@chr1:1100457..1100470, + |
| 1.63e-36 | FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_2ce1052f3a62f68f172e0bbaf87b7d5f | p6@LRRN4 |
| 1.63e-36 | FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_2ce1052f3a62f68f172e0bbaf87b7d5f | p6@LRRN4 |
| 2.81e-35 | FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_ce36c74265ad089d8ac87255b41bdc98 | p3@HNF1B |
| 2.81e-35 | FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_ce36c74265ad089d8ac87255b41bdc98 | p3@HNF1B |
| 4.37e-35 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_d431d30bad4891ff92c63ebdde17a79e | p4@AIF1L |
| 4.37e-35 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_d431d30bad4891ff92c63ebdde17a79e | p4@AIF1L |
| 1.19e-34 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_8928d49e7afc4f115f95af2ebfedc99e | p4@PAX2 |
| 1.19e-34 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_8928d49e7afc4f115f95af2ebfedc99e | p4@PAX2 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr5:167718782..167718785,+#_51e069ad5053af4dc42ad91a7165f89c | p10@WWC1 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr5:167718782..167718785,+#_51e069ad5053af4dc42ad91a7165f89c | p10@WWC1 |
| 2.93e-33 | FFCP PHASE2:Hg19::chr20:6034672..6034714,-#_0178f2477fae4acbabd63fe7ccdfee20 | p2@LRRN4 |
| 2.93e-33 | FFCP PHASE1:Hg19::chr20:6034672..6034714,-#_0178f2477fae4acbabd63fe7ccdfee20 | p2@LRRN4 |
| 1.44e-32 | FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_a4316056f476343250b7d18143e9ec49 | p2@CLDN6 |
| 1.44e-32 | FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_a4316056f476343250b7d18143e9ec49 | p2@CLDN6 |
| 1.85e-32 | FFCP PHASE1:Hg19::chr20:6034828..6034857,-#_e3b12e68e730ca99dd64dd56d94c8a6e | p5@LRRN4 |
| 1.85e-32 | FFCP PHASE2:Hg19::chr20:6034828..6034857,-#_e3b12e68e730ca99dd64dd56d94c8a6e | p5@LRRN4 |
| 4.69e-32 | FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_b155a367260af650ecff5132c31e61ed | p@chr7:140227349..140227360, - |
| 4.69e-32 | FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_b155a367260af650ecff5132c31e61ed | p@chr7:140227349..140227360, - |
| 1.23e-31 | FFCP PHASE1:Hg19::chr17:27970385..27970397,-#_0ea3ee033d5ebfe9181e0494e75e5c58 | p@chr17:27970385..27970397, - |
| 1.23e-31 | FFCP PHASE2:Hg19::chr17:27970385..27970397,-#_0ea3ee033d5ebfe9181e0494e75e5c58 | p@chr17:27970385..27970397, - |
| 2.99e-30 | FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_f275d0989edb7657c79a950f15c0face | p@chr15:85403302..85403304, + |
| 2.99e-30 | FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_f275d0989edb7657c79a950f15c0face | p@chr15:85403302..85403304, + |
| 3.02e-30 | FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_a5575d31a29c7f7ab539760ecb72e797 | p2@B3GALT5 |
| 3.02e-30 | FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_a5575d31a29c7f7ab539760ecb72e797 | p2@B3GALT5 |
| 1.06e-29 | FFCP PHASE2:Hg19::chr19:50390837..50390847,+#_e23f4b0e6cc7372b7713a8f2fbdbd1c5 | p@chr19:50390837..50390847, + |
| 1.06e-29 | FFCP PHASE1:Hg19::chr19:50390837..50390847,+#_e23f4b0e6cc7372b7713a8f2fbdbd1c5 | p@chr19:50390837..50390847, + |
| 1.26e-29 | FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_13c3e9a1ef8e15fe85b6779be6d18f69 | p3@LRRN4 |
| 1.26e-29 | FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_13c3e9a1ef8e15fe85b6779be6d18f69 | p3@LRRN4 |
| 1.54e-29 | FFCP PHASE2:Hg19::chr17:171147..171161,+#_f6dd9168a8557a902915baa5c8e95f50 | p@chr17:171147..171161, + |
| 1.54e-29 | FFCP PHASE1:Hg19::chr17:171147..171161,+#_f6dd9168a8557a902915baa5c8e95f50 | p@chr17:171147..171161, + |
| 3.11e-29 | FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_954222e7185fe9ce2a64527c287fbcea | p@chr21:46826248..46826282, - |
| 3.11e-29 | FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_954222e7185fe9ce2a64527c287fbcea | p@chr21:46826248..46826282, - |
| 4.34e-29 | FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_fa43a26a93d73bbd2f55bdf10e9f06db | p1@ENST00000418041, p1@ENST00000443104 |
| 4.34e-29 | FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_fa43a26a93d73bbd2f55bdf10e9f06db | p1@ENST00000418041, p1@ENST00000443104 |
| 1.58e-28 | FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_d9a4efc12a63997b9e23728511f1be17 | p3@AIF1L |
| 1.58e-28 | FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_d9a4efc12a63997b9e23728511f1be17 | p3@AIF1L |
| 2.94e-28 | FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_afde123f8a6d504f1c7c31539d323069 | p@chr7:7606139..7606151, - |
| 2.94e-28 | FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_afde123f8a6d504f1c7c31539d323069 | p@chr7:7606139..7606151, - |
| 6.08e-28 | FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_5d41cd698fe66a4c75a6ef4acb9ea9cb | p1@ENST00000444849 |
| 6.08e-28 | FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_5d41cd698fe66a4c75a6ef4acb9ea9cb | p1@ENST00000444849 |
| 1.11e-27 | FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_ec31b812e3fb1a2f6f1bcb313f76814d | p2@PAX2 |
| 1.11e-27 | FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_ec31b812e3fb1a2f6f1bcb313f76814d | p2@PAX2 |
| 2.09e-27 | FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_465495ba17953116fb9fc3a5b757c6c3 | p16@TJP2 |
| 2.09e-27 | FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_465495ba17953116fb9fc3a5b757c6c3 | p16@TJP2 |
| 2.35e-27 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_40365627e0f7d8457821227bf43d97a5 | p@chr16:86604624..86604648, + |
| 2.35e-27 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_40365627e0f7d8457821227bf43d97a5 | p@chr16:86604624..86604648, + |
| 3.45e-27 | FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_d70cd2af82e037751810fd6eca786e7d | p7@LRRN4 |
| 3.45e-27 | FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_d70cd2af82e037751810fd6eca786e7d | p7@LRRN4 |
| 7.25e-27 | FFCP PHASE2:Hg19::chr17:171082..171101,+#_5b35f1b89ff9fbf4f950d38717185612 | p@chr17:171082..171101, + |
| 7.25e-27 | FFCP PHASE1:Hg19::chr17:171082..171101,+#_5b35f1b89ff9fbf4f950d38717185612 | p@chr17:171082..171101, + |
| 4.96e-26 | FFCP PHASE2:Hg19::chr20:6033140..6033181,-#_db4d55d569b3dbb6b308483b43ce210f | p1@AB527789 |
| 4.96e-26 | FFCP PHASE1:Hg19::chr20:6033140..6033181,-#_db4d55d569b3dbb6b308483b43ce210f | p1@AB527789 |
| 7.1e-26 | FFCP PHASE1:Hg19::chr2:108994633..108994650,+#_d91313a646430302d8b06fd05926f54c | p4@SULT1C4 |
| 7.1e-26 | FFCP PHASE2:Hg19::chr2:108994633..108994650,+#_d91313a646430302d8b06fd05926f54c | p4@SULT1C4 |
| 9.68e-25 | FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_5723d0f09f399202d15c51cef34ecddc | p4@DCDC2 |
| 9.68e-25 | FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_5723d0f09f399202d15c51cef34ecddc | p4@DCDC2 |
| 1.6e-24 | FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_2642565a43d69257cab09c9abb4b792b | p16@HOXA10 |
| 1.6e-24 | FFCP PHASE1:Hg19::chr2:177053683..177053697,-#_2642565a43d69257cab09c9abb4b792b | p1@LOC401022 |
| 1.6e-24 | FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_2642565a43d69257cab09c9abb4b792b | p16@HOXA10 |
| 1.6e-24 | FFCP PHASE2:Hg19::chr2:177053683..177053697,-#_2642565a43d69257cab09c9abb4b792b | p1@LOC401022 |
| 1.66e-24 | FFCP PHASE2:Hg19::chr22:37823036..37823049,-#_af25d73a2593ff529ee41eb99f744304 | p1@ENST00000451509 |
| 1.66e-24 | FFCP PHASE1:Hg19::chr22:37823036..37823049,-#_af25d73a2593ff529ee41eb99f744304 | p1@ENST00000451509 |
| 1.87e-24 | FFCP PHASE1:Hg19::chr17:46675539..46675551,-#_ce68bb378f6cfb7cdb8b3c168c4ad69a | p7@HOXB6 |
| 1.87e-24 | FFCP PHASE2:Hg19::chr17:46675539..46675551,-#_ce68bb378f6cfb7cdb8b3c168c4ad69a | p7@HOXB6 |
| 2.63e-24 | FFCP PHASE1:Hg19::chr13:26619917..26619921,-#_3f1ad3209d27693fb5dadc6ea1fe46c4 | p@chr13:26619917..26619921, - |
| 2.63e-24 | FFCP PHASE2:Hg19::chr13:26619917..26619921,-#_3f1ad3209d27693fb5dadc6ea1fe46c4 | p@chr13:26619917..26619921, - |
| 2.91e-24 | FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_9631cf3896e231806eae527d184103b4 | p1@HOXD4 |
| 2.91e-24 | FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_9631cf3896e231806eae527d184103b4 | p1@HOXD4 |
| 2.98e-24 | FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_8a86de294bf176dd2f89da71fc928fb4 | p@chr7:98453821..98453843, - |
| 2.98e-24 | FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_8a86de294bf176dd2f89da71fc928fb4 | p@chr7:98453821..98453843, - |
| 3.49e-24 | FFCP PHASE2:Hg19::chr12:6485243..6485254,-#_c0bb02d6ab8ea0c919c5fe48fe945798 | p18@SCNN1A |
| 3.49e-24 | FFCP PHASE1:Hg19::chr12:6485243..6485254,-#_c0bb02d6ab8ea0c919c5fe48fe945798 | p18@SCNN1A |
