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{{UBERON
{{UBERON
|id=UBERON:0005057
|alt_id=
|name=immune organ
|namespace=
|def="An organ that is part of a immune system [Obol]." [OBOL:automatic]
|xref=
|is_a=UBERON:0000062
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An organ that is part of a immune system [Obol]." [OBOL:automatic]
|subset=organ_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005057
|is_a=UBERON:0000062
|is_obsolete=
|located_in=
|located_in=
|name=immune organ
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002405
|part_of=UBERON:0002405
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=organ_slim
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 17:50, 12 September 2014

Name:immune organ
Namespace:FANTOM
Definition:"An organ that is part of a immune system [Obol]." [OBOL:automatic]
Subset: organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000062(organ)
part_of:UBERON:0002405(immune system)



Children

is a:UBERON:0000029 (lymph node),UBERON:0002106 (spleen),UBERON:0002370 (thymus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005057 (immune organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.28e-84FFCP PHASE2:Hg19::chr14:22928012..22928031,+#_396c2f55d9a1a2d7bffcfd7e4ef10a0bp3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
1.28e-84FFCP PHASE1:Hg19::chr14:22928012..22928031,+#_396c2f55d9a1a2d7bffcfd7e4ef10a0bp3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
1.79e-75FFCP PHASE2:Hg19::chr14:106653357..106653369,+#_0b1b6b8c9698dd82e5a02eacb47f58f1p@chr14:106653357..106653369, +
1.79e-75FFCP PHASE1:Hg19::chr14:106653357..106653369,+#_0b1b6b8c9698dd82e5a02eacb47f58f1p@chr14:106653357..106653369, +
6.87e-64FFCP PHASE2:Hg19::chr14:22927984..22927999,+#_a98ae9fe8c7e2ed1764940371b7ebdc0p4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1
6.87e-64FFCP PHASE1:Hg19::chr14:22927984..22927999,+#_a98ae9fe8c7e2ed1764940371b7ebdc0p4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1
6.87e-64FFCP PHASE2:Hg19::chr2:95715295..95715305,+#_a98ae9fe8c7e2ed1764940371b7ebdc0p@chr2:95715295..95715305, +
6.87e-64FFCP PHASE1:Hg19::chr2:95715295..95715305,+#_a98ae9fe8c7e2ed1764940371b7ebdc0p@chr2:95715295..95715305, +
4.76e-57FFCP PHASE1:Hg19::chr15:58920068..58920073,-#_198aa72c7bc4632e29292d4feed217a1p@chr15:58920068..58920073, -
4.76e-57FFCP PHASE1:Hg19::chr15:99071828..99071840,+#_198aa72c7bc4632e29292d4feed217a1p@chr15:99071828..99071840, +
4.76e-57FFCP PHASE1:Hg19::chr1:160643289..160643296,+#_198aa72c7bc4632e29292d4feed217a1p4@ENST00000443928
4.76e-57FFCP PHASE1:Hg19::chr15:60131337..60131352,-#_198aa72c7bc4632e29292d4feed217a1p@chr15:60131337..60131352, -
4.76e-57FFCP PHASE1:Hg19::chr12:123634449..123634460,-#_198aa72c7bc4632e29292d4feed217a1p25@PITPNM2
4.76e-57FFCP PHASE1:Hg19::chr12:48227243..48227269,+#_198aa72c7bc4632e29292d4feed217a1p@chr12:48227243..48227269, +
4.76e-57FFCP PHASE1:Hg19::chr16:84218794..84218800,+#_198aa72c7bc4632e29292d4feed217a1p@chr16:84218794..84218800, +
4.76e-57FFCP PHASE1:Hg19::chr13:99628323..99628332,-#_198aa72c7bc4632e29292d4feed217a1p@chr13:99628323..99628332, -
4.76e-57FFCP PHASE1:Hg19::chr1:158332631..158332640,+#_198aa72c7bc4632e29292d4feed217a1p@chr1:158332631..158332640, +
4.76e-57FFCP PHASE1:Hg19::chr10:98014908..98014919,-#_198aa72c7bc4632e29292d4feed217a1p@chr10:98014908..98014919, -
4.76e-57FFCP PHASE1:Hg19::chr12:123559708..123559720,-#_198aa72c7bc4632e29292d4feed217a1p@chr12:123559708..123559720, -
4.76e-57FFCP PHASE1:Hg19::chr19:28877072..28877084,-#_198aa72c7bc4632e29292d4feed217a1p@chr19:28877072..28877084, -
4.76e-57FFCP PHASE1:Hg19::chr20:58830811..58830825,+#_198aa72c7bc4632e29292d4feed217a1p@chr20:58830811..58830825, +
4.76e-57FFCP PHASE1:Hg19::chr20:58830665..58830675,+#_198aa72c7bc4632e29292d4feed217a1p@chr20:58830665..58830675, +
4.76e-57FFCP PHASE1:Hg19::chr10:11486829..11486836,+#_198aa72c7bc4632e29292d4feed217a1p@chr10:11486829..11486836, +
4.76e-57FFCP PHASE1:Hg19::chr1:158301280..158301298,+#_198aa72c7bc4632e29292d4feed217a1p@chr1:158301280..158301298, +
4.76e-57FFCP PHASE1:Hg19::chr10:11486877..11486886,+#_198aa72c7bc4632e29292d4feed217a1p@chr10:11486877..11486886, +
4.76e-57FFCP PHASE1:Hg19::chr10:115022988..115023001,+#_198aa72c7bc4632e29292d4feed217a1p@chr10:115022988..115023001, +
4.76e-57FFCP PHASE1:Hg19::chr10:115023005..115023015,+#_198aa72c7bc4632e29292d4feed217a1p@chr10:115023005..115023015, +
4.76e-57FFCP PHASE1:Hg19::chr14:75904485..75904519,+#_198aa72c7bc4632e29292d4feed217a1p12@JDP2
4.76e-57FFCP PHASE1:Hg19::chr1:204507243..204507252,+#_198aa72c7bc4632e29292d4feed217a1p19@MDM4
4.76e-57FFCP PHASE1:Hg19::chr10:115023055..115023072,+#_198aa72c7bc4632e29292d4feed217a1p@chr10:115023055..115023072, +
4.76e-57FFCP PHASE1:Hg19::chr10:115023094..115023106,+#_198aa72c7bc4632e29292d4feed217a1p@chr10:115023094..115023106, +
4.76e-57FFCP PHASE1:Hg19::chr15:60131313..60131324,-#_198aa72c7bc4632e29292d4feed217a1p@chr15:60131313..60131324, -
4.76e-57FFCP PHASE1:Hg19::chr14:98229095..98229108,-#_198aa72c7bc4632e29292d4feed217a1p1@ENST00000555187
4.76e-57FFCP PHASE1:Hg19::chr12:123627753..123627760,+#_198aa72c7bc4632e29292d4feed217a1p@chr12:123627753..123627760, +
4.76e-57FFCP PHASE1:Hg19::chr11:56859693..56859701,-#_198aa72c7bc4632e29292d4feed217a1p@chr11:56859693..56859701, -
4.76e-57FFCP PHASE1:Hg19::chr15:57017749..57017755,-#_198aa72c7bc4632e29292d4feed217a1p@chr15:57017749..57017755, -
4.76e-57FFCP PHASE1:Hg19::chr20:30272266..30272271,-#_198aa72c7bc4632e29292d4feed217a1p@chr20:30272266..30272271, -
4.76e-57FFCP PHASE1:Hg19::chr12:123560793..123560802,+#_198aa72c7bc4632e29292d4feed217a1p@chr12:123560793..123560802, +
4.76e-57FFCP PHASE1:Hg19::chr1:159172187..159172197,-#_198aa72c7bc4632e29292d4feed217a1p1@uc001ftm.1
4.76e-57FFCP PHASE1:Hg19::chr13:99628347..99628352,-#_198aa72c7bc4632e29292d4feed217a1p@chr13:99628347..99628352, -
4.76e-57FFCP PHASE1:Hg19::chr13:99628388..99628399,-#_198aa72c7bc4632e29292d4feed217a1p@chr13:99628388..99628399, -
4.76e-57FFCP PHASE1:Hg19::chr1:194245598..194245600,-#_198aa72c7bc4632e29292d4feed217a1p@chr1:194245598..194245600, -
4.76e-57FFCP PHASE1:Hg19::chr17:76274572..76274581,-#_198aa72c7bc4632e29292d4feed217a1p4@ENST00000374945
4.76e-57FFCP PHASE1:Hg19::chr17:78171885..78171900,+#_198aa72c7bc4632e29292d4feed217a1p@chr17:78171885..78171900, +
4.76e-57FFCP PHASE1:Hg19::chr11:8954087..8954092,-#_198aa72c7bc4632e29292d4feed217a1p1@AB527792
4.76e-57FFCP PHASE1:Hg19::chr1:158260649..158260652,+#_198aa72c7bc4632e29292d4feed217a1p13@CD1C
4.76e-57FFCP PHASE1:Hg19::chr1:200500161..200500173,-#_198aa72c7bc4632e29292d4feed217a1p@chr1:200500161..200500173, -
4.76e-57FFCP PHASE1:Hg19::chr12:123636839..123636885,-#_198aa72c7bc4632e29292d4feed217a1p@chr12:123636839..123636885, -
4.76e-57FFCP PHASE1:Hg19::chr21:28820911..28820933,-#_198aa72c7bc4632e29292d4feed217a1p1@ENST00000420186, p1@uc002ymh.2
4.76e-57FFCP PHASE1:Hg19::chr17:76274646..76274658,-#_198aa72c7bc4632e29292d4feed217a1p2@ENST00000374945
4.76e-57FFCP PHASE1:Hg19::chr16:49633750..49633778,-#_198aa72c7bc4632e29292d4feed217a1p@chr16:49633750..49633778, -
4.76e-57FFCP PHASE1:Hg19::chr1:26320241..26320248,-#_198aa72c7bc4632e29292d4feed217a1p@chr1:26320241..26320248, -
4.76e-57FFCP PHASE1:Hg19::chr11:6953654..6953661,+#_198aa72c7bc4632e29292d4feed217a1p5@ZNF215
4.76e-57FFCP PHASE1:Hg19::chr20:58830799..58830808,+#_198aa72c7bc4632e29292d4feed217a1p@chr20:58830799..58830808, +
4.76e-57FFCP PHASE1:Hg19::chr16:74359040..74359071,+#_198aa72c7bc4632e29292d4feed217a1p@chr16:74359040..74359071, +
4.76e-57FFCP PHASE1:Hg19::chr15:60131355..60131365,-#_198aa72c7bc4632e29292d4feed217a1p@chr15:60131355..60131365, -
4.76e-57FFCP PHASE1:Hg19::chr12:59432175..59432191,+#_198aa72c7bc4632e29292d4feed217a1p@chr12:59432175..59432191, +
4.76e-57FFCP PHASE1:Hg19::chr10:26726728..26726731,+#_198aa72c7bc4632e29292d4feed217a1p17@APBB1IP
4.76e-57FFCP PHASE1:Hg19::chr20:58830826..58830835,+#_198aa72c7bc4632e29292d4feed217a1p@chr20:58830826..58830835, +
4.76e-57FFCP PHASE1:Hg19::chr1:44035057..44035068,+#_198aa72c7bc4632e29292d4feed217a1p@chr1:44035057..44035068, +
4.76e-57FFCP PHASE1:Hg19::chr17:80866179..80866188,+#_198aa72c7bc4632e29292d4feed217a1p@chr17:80866179..80866188, +
4.76e-57FFCP PHASE1:Hg19::chr1:28520450..28520453,-#_198aa72c7bc4632e29292d4feed217a1p21@PTAFR
4.76e-57FFCP PHASE1:Hg19::chr1:55776022..55776029,-#_198aa72c7bc4632e29292d4feed217a1p@chr1:55776022..55776029, -
4.76e-57FFCP PHASE1:Hg19::chr1:55776031..55776038,-#_198aa72c7bc4632e29292d4feed217a1p@chr1:55776031..55776038, -
4.76e-57FFCP PHASE1:Hg19::chr11:1891326..1891337,-#_198aa72c7bc4632e29292d4feed217a1p@chr11:1891326..1891337, -
4.76e-57FFCP PHASE1:Hg19::chr11:36589389..36589398,-#_198aa72c7bc4632e29292d4feed217a1p@chr11:36589389..36589398, -
4.76e-57FFCP PHASE1:Hg19::chr13:99628369..99628374,-#_198aa72c7bc4632e29292d4feed217a1p@chr13:99628369..99628374, -
4.76e-57FFCP PHASE1:Hg19::chr11:36622593..36622605,+#_198aa72c7bc4632e29292d4feed217a1p@chr11:36622593..36622605, +
4.76e-57FFCP PHASE1:Hg19::chr12:133414662..133414671,-#_198aa72c7bc4632e29292d4feed217a1p@chr12:133414662..133414671, -
4.76e-57FFCP PHASE1:Hg19::chr15:95561320..95561328,-#_198aa72c7bc4632e29292d4feed217a1p@chr15:95561320..95561328, -
4.76e-57FFCP PHASE1:Hg19::chr17:4090402..4090406,-#_198aa72c7bc4632e29292d4feed217a1p@chr17:4090402..4090406, -
4.76e-57FFCP PHASE1:Hg19::chr15:58069582..58069594,+#_198aa72c7bc4632e29292d4feed217a1p@chr15:58069582..58069594, +
4.76e-57FFCP PHASE1:Hg19::chr1:158170478..158170491,-#_198aa72c7bc4632e29292d4feed217a1p@chr1:158170478..158170491, -
4.76e-57FFCP PHASE1:Hg19::chr1:158303678..158303720,-#_198aa72c7bc4632e29292d4feed217a1p@chr1:158303678..158303720, -
4.76e-57FFCP PHASE1:Hg19::chr1:204494413..204494420,+#_198aa72c7bc4632e29292d4feed217a1p17@MDM4
4.76e-57FFCP PHASE1:Hg19::chr1:158260453..158260459,-#_198aa72c7bc4632e29292d4feed217a1p@chr1:158260453..158260459, -
4.76e-57FFCP PHASE1:Hg19::chr1:158334207..158334219,-#_198aa72c7bc4632e29292d4feed217a1p1@AK128347
4.76e-57FFCP PHASE1:Hg19::chr18:13437980..13437986,+#_198aa72c7bc4632e29292d4feed217a1p@chr18:13437980..13437986, +
4.76e-57FFCP PHASE1:Hg19::chr12:123560608..123560615,-#_198aa72c7bc4632e29292d4feed217a1p24@PITPNM2
4.76e-57FFCP PHASE1:Hg19::chr19:32401253..32401271,-#_198aa72c7bc4632e29292d4feed217a1p@chr19:32401253..32401271, -
4.76e-57FFCP PHASE1:Hg19::chr12:133413547..133413557,-#_198aa72c7bc4632e29292d4feed217a1p13@POLE
4.76e-57FFCP PHASE1:Hg19::chr1:199026759..199026762,+#_198aa72c7bc4632e29292d4feed217a1p@chr1:199026759..199026762, +
4.76e-57FFCP PHASE1:Hg19::chr1:158226030..158226041,+#_198aa72c7bc4632e29292d4feed217a1p@chr1:158226030..158226041, +
4.76e-57FFCP PHASE1:Hg19::chr11:56859638..56859643,-#_198aa72c7bc4632e29292d4feed217a1p@chr11:56859638..56859643, -
4.76e-57FFCP PHASE1:Hg19::chr11:56859608..56859619,-#_198aa72c7bc4632e29292d4feed217a1p@chr11:56859608..56859619, -
4.76e-57FFCP PHASE1:Hg19::chr12:123559773..123559784,-#_198aa72c7bc4632e29292d4feed217a1p@chr12:123559773..123559784, -
4.76e-57FFCP PHASE1:Hg19::chr10:98014943..98014960,-#_198aa72c7bc4632e29292d4feed217a1p@chr10:98014943..98014960, -
4.76e-57FFCP PHASE1:Hg19::chr11:925449..925458,+#_198aa72c7bc4632e29292d4feed217a1p17@AP2A2
4.76e-57FFCP PHASE1:Hg19::chr11:56859603..56859606,-#_198aa72c7bc4632e29292d4feed217a1p@chr11:56859603..56859606, -
4.76e-57FFCP PHASE1:Hg19::chr15:56940732..56940741,+#_198aa72c7bc4632e29292d4feed217a1p@chr15:56940732..56940741, +
4.76e-57FFCP PHASE1:Hg19::chr1:204494427..204494436,+#_198aa72c7bc4632e29292d4feed217a1p15@MDM4
4.76e-57FFCP PHASE1:Hg19::chr15:58069597..58069604,+#_198aa72c7bc4632e29292d4feed217a1p@chr15:58069597..58069604, +
4.76e-57FFCP PHASE1:Hg19::chr1:160643269..160643276,+#_198aa72c7bc4632e29292d4feed217a1p5@ENST00000443928
4.76e-57FFCP PHASE1:Hg19::chr15:58069384..58069408,+#_198aa72c7bc4632e29292d4feed217a1p@chr15:58069384..58069408, +
4.76e-57FFCP PHASE1:Hg19::chr1:2084380..2084413,-#_198aa72c7bc4632e29292d4feed217a1p@chr1:2084380..2084413, -
4.76e-57FFCP PHASE1:Hg19::chr12:48225126..48225164,+#_198aa72c7bc4632e29292d4feed217a1p1@ENST00000548564, p1@ENST00000550720, p1@ENST00000550909
4.76e-57FFCP PHASE1:Hg19::chr10:72542272..72542281,-#_198aa72c7bc4632e29292d4feed217a1p6@C10orf27
4.76e-57FFCP PHASE1:Hg19::chr1:32314477..32314482,+#_198aa72c7bc4632e29292d4feed217a1p@chr1:32314477..32314482, +
4.76e-57FFCP PHASE1:Hg19::chr20:58833004..58833011,+#_198aa72c7bc4632e29292d4feed217a1p@chr20:58833004..58833011, +
4.76e-57FFCP PHASE1:Hg19::chr12:123607146..123607168,-#_198aa72c7bc4632e29292d4feed217a1p@chr12:123607146..123607168, -

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