UBERON:0004797: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004797 | |||
|is_a=UBERON:0004120 ;;UBERON:0004923 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=blood vessel layer | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001981 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref=MA:0002854 | |||
}} | }} | ||
Latest revision as of 17:48, 12 September 2014
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004120(mesoderm-derived structure),UBERON:0004923(organ component layer) |
|---|---|
| part_of: | UBERON:0001981(blood vessel) |
Children
| is a: | UBERON:0002523 (tunica intima),UBERON:0005734 (tunica adventitia of blood vessel) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11245-116E3 (Fibroblast - Aortic Adventitial, donor1)
- 11326-117E3 (Fibroblast - Aortic Adventitial, donor2)
- 11401-118D6 (Fibroblast - Aortic Adventitial, donor3)
- 14309-155C7
- 14310-155C8 (Fibroblast - Aortic Adventitial donor3 (cytoplasmic fraction))
- 14311-155C9 (Fibroblast - Aortic Adventitial, donor3 (nuclear fraction))
- 14330-155F1
- 14331-155F2 (Fibroblast - Aortic Adventitial donor2 (cytoplasmic fraction))
- 14332-155F3 (Fibroblast - Aortic Adventitial, donor2 (nuclear fraction))
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004797 (blood vessel layer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.52e-64 | FFCP PHASE2:Hg19::chr7:25815812..25815822,-#_72ac0eef6e80fd41fac069f8d9bffea5 | p@chr7:25815812..25815822, - |
| 8.52e-64 | FFCP PHASE1:Hg19::chr7:25815812..25815822,-#_72ac0eef6e80fd41fac069f8d9bffea5 | p@chr7:25815812..25815822, - |
| 4.76e-57 | FFCP PHASE2:Hg19::chr12:3373147..3373149,-#_bcb8880235654abdebddbb1168332776 | p@chr12:3373147..3373149, - |
| 4.76e-57 | FFCP PHASE1:Hg19::chr12:3373147..3373149,-#_bcb8880235654abdebddbb1168332776 | p@chr12:3373147..3373149, - |
| 3.24e-51 | FFCP PHASE1:Hg19::chr1:20355975..20355980,-#_f9e10e428ee8f511af48097fda260089 | p@chr1:20355975..20355980, - |
| 3.24e-51 | FFCP PHASE2:Hg19::chr1:20355975..20355980,-#_f9e10e428ee8f511af48097fda260089 | p@chr1:20355975..20355980, - |
| 4.53e-43 | FFCP PHASE2:Hg19::chr1:237331032..237331036,+#_5f8ed76a4cbe56dca7fbdfe4a3472332 | p@chr1:237331032..237331036, + |
| 4.53e-43 | FFCP PHASE1:Hg19::chr1:237331032..237331036,+#_5f8ed76a4cbe56dca7fbdfe4a3472332 | p@chr1:237331032..237331036, + |
| 5.22e-43 | FFCP PHASE2:Hg19::chr4:67298860..67298867,-#_125fc192c36bec70859f6e286aa17f2c | p@chr4:67298860..67298867, - |
| 5.22e-43 | FFCP PHASE1:Hg19::chr4:67298860..67298867,-#_125fc192c36bec70859f6e286aa17f2c | p@chr4:67298860..67298867, - |
| 9.27e-43 | FFCP PHASE2:Hg19::chr8:93031384..93031395,-#_483ca9459bf509b6982ab6c3874dc483 | p34@RUNX1T1 |
| 9.27e-43 | FFCP PHASE1:Hg19::chr8:93031384..93031395,-#_483ca9459bf509b6982ab6c3874dc483 | p34@RUNX1T1 |
| 1.49e-38 | FFCP PHASE2:Hg19::chr7:22687639..22687644,+#_8b5e48b73556fbc7e4de04482d12b694 | p@chr7:22687639..22687644, + |
| 1.49e-38 | FFCP PHASE2:Hg19::chr5:93904635..93904644,+#_8b5e48b73556fbc7e4de04482d12b694 | p@chr5:93904635..93904644, + |
| 1.49e-38 | FFCP PHASE1:Hg19::chr7:22687639..22687644,+#_8b5e48b73556fbc7e4de04482d12b694 | p@chr7:22687639..22687644, + |
| 1.49e-38 | FFCP PHASE1:Hg19::chr5:93904635..93904644,+#_8b5e48b73556fbc7e4de04482d12b694 | p@chr5:93904635..93904644, + |
| 1.8e-38 | FFCP PHASE2:Hg19::chr11:29207409..29207435,+#_bbcf88ff21ec0332acbfd8b2d7ce8fcf | p@chr11:29207409..29207435, + |
| 1.8e-38 | FFCP PHASE1:Hg19::chr11:29207409..29207435,+#_bbcf88ff21ec0332acbfd8b2d7ce8fcf | p@chr11:29207409..29207435, + |
| 2.18e-38 | FFCP PHASE1:Hg19::chr1:11907265..11907271,-#_ac325ffb3f0e9350bf10f7cd8b02f1eb | p9@NPPA |
| 2.18e-38 | FFCP PHASE2:Hg19::chr2:18116344..18116353,+#_ac325ffb3f0e9350bf10f7cd8b02f1eb | p@chr2:18116344..18116353, + |
| 2.18e-38 | FFCP PHASE1:Hg19::chr2:18116344..18116353,+#_ac325ffb3f0e9350bf10f7cd8b02f1eb | p@chr2:18116344..18116353, + |
| 2.18e-38 | FFCP PHASE2:Hg19::chr6:6739548..6739577,-#_ac325ffb3f0e9350bf10f7cd8b02f1eb | p@chr6:6739548..6739577, - |
| 2.18e-38 | FFCP PHASE1:Hg19::chr6:6739548..6739577,-#_ac325ffb3f0e9350bf10f7cd8b02f1eb | p@chr6:6739548..6739577, - |
| 2.18e-38 | FFCP PHASE2:Hg19::chr1:11907265..11907271,-#_ac325ffb3f0e9350bf10f7cd8b02f1eb | p9@NPPA |
| 5.57e-37 | FFCP PHASE2:Hg19::chrX:112324334..112324339,-#_df449cae2f98897510b2fda221130e96 | p@chrX:112324334..112324339, - |
| 5.57e-37 | FFCP PHASE1:Hg19::chrX:112324334..112324339,-#_df449cae2f98897510b2fda221130e96 | p@chrX:112324334..112324339, - |
| 8.05e-37 | FFCP PHASE2:Hg19::chr2:220491902..220491915,+#_2f7d0b476841ac36f343551f068831ef | p11@SLC4A3 |
| 8.05e-37 | FFCP PHASE1:Hg19::chr2:220491902..220491915,+#_2f7d0b476841ac36f343551f068831ef | p11@SLC4A3 |
| 9.1e-37 | FFCP PHASE2:Hg19::chr2:179533457..179533461,-#_47f89cca7be603655534d09342a108d6 | p@chr2:179533457..179533461, - |
| 9.1e-37 | FFCP PHASE1:Hg19::chr2:179533457..179533461,-#_47f89cca7be603655534d09342a108d6 | p@chr2:179533457..179533461, - |
| 1.03e-36 | FFCP PHASE2:Hg19::chr2:179398102..179398109,-#_d9b7430eb2b31deb9b8c3a5a3ab38570 | p@chr2:179398102..179398109, - |
| 1.03e-36 | FFCP PHASE1:Hg19::chr2:179398102..179398109,-#_d9b7430eb2b31deb9b8c3a5a3ab38570 | p@chr2:179398102..179398109, - |
| 1.21e-32 | FFCP PHASE2:Hg19::chr5:123739302..123739319,-#_f8e9cfd6f6cc6f15a4e35a1d33b54e83 | p@chr5:123739302..123739319, - |
| 1.21e-32 | FFCP PHASE1:Hg19::chr5:123739302..123739319,-#_f8e9cfd6f6cc6f15a4e35a1d33b54e83 | p@chr5:123739302..123739319, - |
| 1.24e-32 | FFCP PHASE2:Hg19::chr7:112635649..112635669,-#_34b94cf66fc71beb0149d81b804b2f86 | p2@ENST00000447785 |
| 1.24e-32 | FFCP PHASE1:Hg19::chr7:112635649..112635669,-#_34b94cf66fc71beb0149d81b804b2f86 | p2@ENST00000447785 |
| 1.35e-32 | FFCP PHASE2:Hg19::chr18:64271475..64271484,-#_20a44d606931151771ab5221120cd356 | p6@CDH19 |
| 1.35e-32 | FFCP PHASE1:Hg19::chr18:64271475..64271484,-#_20a44d606931151771ab5221120cd356 | p6@CDH19 |
| 1.5e-32 | FFCP PHASE2:Hg19::chr7:35286774..35286778,-#_9845b2ec25ecb942fe32e2975c6c90cc | p@chr7:35286774..35286778, - |
| 1.5e-32 | FFCP PHASE1:Hg19::chr7:35286774..35286778,-#_9845b2ec25ecb942fe32e2975c6c90cc | p@chr7:35286774..35286778, - |
| 1.67e-32 | FFCP PHASE2:Hg19::chr6:129355052..129355056,+#_ec872f80e82198b500ae5f132384b65e | p@chr6:129355052..129355056, + |
| 1.67e-32 | FFCP PHASE1:Hg19::chr6:129355052..129355056,+#_ec872f80e82198b500ae5f132384b65e | p@chr6:129355052..129355056, + |
| 2.08e-32 | FFCP PHASE2:Hg19::chr3:16940540..16940554,+#_1a16532fd5befb63b7e961361727491a | p@chr3:16940540..16940554, + |
| 2.08e-32 | FFCP PHASE1:Hg19::chr3:16940540..16940554,+#_1a16532fd5befb63b7e961361727491a | p@chr3:16940540..16940554, + |
| 2.31e-32 | FFCP PHASE2:Hg19::chr19:55661803..55661807,-#_2e5d2409a88e01b99180bc3d54e62e8d | p@chr19:55661803..55661807, - |
| 2.31e-32 | FFCP PHASE1:Hg19::chr20:33565465..33565475,+#_2e5d2409a88e01b99180bc3d54e62e8d | p9@MYH7B |
| 2.31e-32 | FFCP PHASE1:Hg19::chr19:55661803..55661807,-#_2e5d2409a88e01b99180bc3d54e62e8d | p@chr19:55661803..55661807, - |
| 2.31e-32 | FFCP PHASE2:Hg19::chr1:201328779..201328797,-#_2e5d2409a88e01b99180bc3d54e62e8d | p@chr1:201328779..201328797, - |
| 2.31e-32 | FFCP PHASE1:Hg19::chr1:201328779..201328797,-#_2e5d2409a88e01b99180bc3d54e62e8d | p@chr1:201328779..201328797, - |
| 2.31e-32 | FFCP PHASE2:Hg19::chr3:131523446..131523459,-#_2e5d2409a88e01b99180bc3d54e62e8d | p@chr3:131523446..131523459, - |
| 2.31e-32 | FFCP PHASE1:Hg19::chr3:131523446..131523459,-#_2e5d2409a88e01b99180bc3d54e62e8d | p@chr3:131523446..131523459, - |
| 2.31e-32 | FFCP PHASE2:Hg19::chr20:33565465..33565475,+#_2e5d2409a88e01b99180bc3d54e62e8d | p9@MYH7B |
| 2.86e-32 | FFCP PHASE2:Hg19::chr6:36812121..36812130,-#_538e6a8ac20f971f14467e60186c96ab | p@chr6:36812121..36812130, - |
| 2.86e-32 | FFCP PHASE1:Hg19::chr6:36812121..36812130,-#_538e6a8ac20f971f14467e60186c96ab | p@chr6:36812121..36812130, - |
| 3.19e-32 | FFCP PHASE2:Hg19::chr14:105939326..105939337,+#_7ea94bf61591fdfa801099079a2e06fa | p16@CRIP2 |
| 3.19e-32 | FFCP PHASE1:Hg19::chr14:105939326..105939337,+#_7ea94bf61591fdfa801099079a2e06fa | p16@CRIP2 |
| 3.29e-32 | FFCP PHASE1:Hg19::chr3:46607836..46607847,-#_365cf7605817fc9a5ed8221b8c3a992c | p5@LRRC2 |
| 3.29e-32 | FFCP PHASE2:Hg19::chr3:46607836..46607847,-#_365cf7605817fc9a5ed8221b8c3a992c | p5@LRRC2 |
| 3.55e-32 | FFCP PHASE2:Hg19::chr1:206838422..206838456,+#_a32ef8093f7846155360a6958df62cfe | p@chr1:206838422..206838456, + |
| 3.55e-32 | FFCP PHASE1:Hg19::chr1:206838422..206838456,+#_a32ef8093f7846155360a6958df62cfe | p@chr1:206838422..206838456, + |
| 3.95e-32 | FFCP PHASE2:Hg19::chr1:231983543..231983554,-#_4682dd026203301592adeb358ebf892d | p@chr1:231983543..231983554, - |
| 3.95e-32 | FFCP PHASE1:Hg19::chr1:231983543..231983554,-#_4682dd026203301592adeb358ebf892d | p@chr1:231983543..231983554, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr2:18807662..18807665,-#_9c501ef7523d6722c5a37c180c09b313 | p@chr2:18807662..18807665, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr21:28955184..28955188,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr21:28955184..28955188, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr5:163602194..163602199,-#_9c501ef7523d6722c5a37c180c09b313 | p@chr5:163602194..163602199, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr11:10349108..10349113,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr11:10349108..10349113, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr14:23158454..23158473,-#_9c501ef7523d6722c5a37c180c09b313 | p@chr14:23158454..23158473, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr11:10349108..10349113,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr11:10349108..10349113, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr3:98699947..98699957,-#_9c501ef7523d6722c5a37c180c09b313 | p@chr3:98699947..98699957, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr12:76108116..76108123,-#_9c501ef7523d6722c5a37c180c09b313 | p@chr12:76108116..76108123, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr11:29331768..29331769,-#_9c501ef7523d6722c5a37c180c09b313 | p@chr11:29331768..29331769, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr14:23158454..23158473,-#_9c501ef7523d6722c5a37c180c09b313 | p@chr14:23158454..23158473, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr8:123376383..123376386,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr8:123376383..123376386, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr4:77703570..77703577,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr4:77703570..77703577, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr5:99390735..99390743,-#_9c501ef7523d6722c5a37c180c09b313 | p@chr5:99390735..99390743, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr2:55327810..55327812,-#_9c501ef7523d6722c5a37c180c09b313 | p@chr2:55327810..55327812, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr7:32133423..32133424,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr7:32133423..32133424, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr6:57128349..57128352,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr6:57128349..57128352, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr2:162943708..162943739,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr2:162943708..162943739, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr8:123376383..123376386,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr8:123376383..123376386, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr2:18807662..18807665,-#_9c501ef7523d6722c5a37c180c09b313 | p@chr2:18807662..18807665, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr1:219498496..219498503,-#_9c501ef7523d6722c5a37c180c09b313 | p@chr1:219498496..219498503, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr6:140070083..140070090,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr6:140070083..140070090, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr2:216588131..216588134,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr2:216588131..216588134, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr12:76175230..76175237,-#_9c501ef7523d6722c5a37c180c09b313 | p@chr12:76175230..76175237, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr3:98699947..98699957,-#_9c501ef7523d6722c5a37c180c09b313 | p@chr3:98699947..98699957, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr2:151537893..151537898,-#_9c501ef7523d6722c5a37c180c09b313 | p@chr2:151537893..151537898, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr4:77703570..77703577,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr4:77703570..77703577, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr1:219498496..219498503,-#_9c501ef7523d6722c5a37c180c09b313 | p@chr1:219498496..219498503, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr1:226851965..226851967,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr1:226851965..226851967, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr5:14109718..14109721,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr5:14109718..14109721, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr10:92678409..92678410,-#_9c501ef7523d6722c5a37c180c09b313 | p@chr10:92678409..92678410, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr7:32133423..32133424,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr7:32133423..32133424, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr1:226851965..226851967,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr1:226851965..226851967, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr6:57128349..57128352,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr6:57128349..57128352, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr9:118413835..118413843,-#_9c501ef7523d6722c5a37c180c09b313 | p@chr9:118413835..118413843, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr3:141105574..141105581,-#_9c501ef7523d6722c5a37c180c09b313 | p@chr3:141105574..141105581, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr6:140070083..140070090,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr6:140070083..140070090, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr7:84807360..84807364,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr7:84807360..84807364, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr2:216588131..216588134,+#_9c501ef7523d6722c5a37c180c09b313 | p@chr2:216588131..216588134, + |
