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{{UBERON
{{UBERON
|id=UBERON:0004121
|alt_id=
|name=ectoderm-derived structure
|namespace=
|def="An anatomical structure that develops (entirely or partially) from the ectoderm." [UBERON:cjm]
|xref=
|is_a=UBERON:0000061
|synonym=
|comment=Grouping term for query purposes
|comment=Grouping term for query purposes
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An anatomical structure that develops (entirely or partially) from the ectoderm." [UBERON:cjm]
|subset=grouping_class
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0000924
|develops_from=UBERON:0000924
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004121
|is_a=UBERON:0000061
|is_obsolete=
|located_in=
|located_in=
|name=ectoderm-derived structure
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=grouping_class
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 17:43, 12 September 2014

Name:ectoderm-derived structure
Namespace:FANTOM
Definition:"An anatomical structure that develops (entirely or partially) from the ectoderm." [UBERON:cjm]
Comments:Grouping term for query purposes
Subset: grouping_class

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000061(anatomical structure)
develops_from:UBERON:0000924(ectoderm)



Children

is a:UBERON:0000004 (olfactory apparatus),UBERON:0000012 (somatic nervous system),UBERON:0000014 (zone of skin),UBERON:0000019 (camera-type eye),UBERON:0000078 (mixed ectoderm/mesoderm/endoderm-derived structure),UBERON:0000166 (oral opening),UBERON:0000200 (gyrus),UBERON:0000349 (limbic system),UBERON:0000412 (dermal papilla),UBERON:0000941 (cranial nerve II),UBERON:0000955 (brain),UBERON:0000965 (lens of camera-type eye),UBERON:0000966 (retina),UBERON:0001017 (central nervous system),UBERON:0001708 (jaw skeleton),UBERON:0001723 (tongue),UBERON:0001726 (papilla of tongue),UBERON:0001781 (layer of retina),UBERON:0001798 (vitreous body),UBERON:0001801 (anterior segment of eyeball),UBERON:0001802 (posterior segment of eyeball),UBERON:0001811 (conjunctiva),UBERON:0001826 (nasal cavity mucosa),UBERON:0001846 (internal ear),UBERON:0001849 (membranous labyrinth),UBERON:0001855 (cochlear duct of membranous labyrinth),UBERON:0001869 (cerebral hemisphere),UBERON:0001896 (medulla oblongata),UBERON:0001911 (mammary gland),UBERON:0001992 (papillary layer of dermis),UBERON:0002022 (insula),UBERON:0002025 (stratum basale of epidermis),UBERON:0002067 (dermis),UBERON:0002073 (hair follicle),UBERON:0002097 (skin of body),UBERON:0002196 (adenohypophysis),UBERON:0002227 (spiral organ of cochlea),UBERON:0002240 (spinal cord),UBERON:0002242 (nucleus pulposus),UBERON:0002259 (corpora quadrigemina),UBERON:0002328 (notochord),UBERON:0002342 (neural crest),UBERON:0002346 (neurectoderm),UBERON:0002360 (meninx),UBERON:0002419 (skin gland),UBERON:0002499 (cochlear labyrinth),UBERON:0002616 (regional part of brain),UBERON:0003023 (pontine tegmentum),UBERON:0003056 (pre-chordal neural plate),UBERON:0003072 (optic cup)... further results

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004121 (ectoderm-derived structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.23e-62FFCP PHASE2:Hg19::chr11:31839488..31839515,-#_aeed1f5bb432077d79480aff08b74453p3@PAX6
3.23e-62FFCP PHASE1:Hg19::chr11:31839488..31839515,-#_aeed1f5bb432077d79480aff08b74453p3@PAX6
6.65e-62FFCP PHASE1:Hg19::chr1:197237352..197237414,+#_c8b4b751cb12195ecfb140d54cd8063fp2@CRB1
6.65e-62FFCP PHASE2:Hg19::chr1:197237352..197237414,+#_c8b4b751cb12195ecfb140d54cd8063fp2@CRB1
1.04e-61FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_e0d094702ed381fc44aaa36522d9d53dp3@CTNND2
1.04e-61FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_e0d094702ed381fc44aaa36522d9d53dp3@CTNND2
1.02e-60FFCP PHASE1:Hg19::chr5:87980761..87980821,-#_dd530520728ebc7415fbe6627ad3efc2p4@LINC00461
1.02e-60FFCP PHASE2:Hg19::chr5:87980761..87980821,-#_dd530520728ebc7415fbe6627ad3efc2p4@LINC00461
6.2e-60FFCP PHASE2:Hg19::chr6:123100738..123100763,+#_b0c082b0827a2d50d4dabe8925928435p2@FABP7
6.2e-60FFCP PHASE1:Hg19::chr6:123100738..123100763,+#_b0c082b0827a2d50d4dabe8925928435p2@FABP7
1.12e-59FFCP PHASE2:Hg19::chr11:62475005..62475041,-#_332ce5a2baae004e905ea08963a73458p6@BSCL2
1.12e-59FFCP PHASE1:Hg19::chr11:62475005..62475041,-#_332ce5a2baae004e905ea08963a73458p6@BSCL2
1.34e-59FFCP PHASE1:Hg19::chr4:165305086..165305179,-#_672f9916fc82bfcf3ff9a93b0b951bdap2@MARCH1
1.34e-59FFCP PHASE2:Hg19::chr4:165305086..165305179,-#_672f9916fc82bfcf3ff9a93b0b951bdap2@MARCH1
1.88e-59FFCP PHASE2:Hg19::chr18:59000657..59000672,+#_929cd116586c0d17c8aa9786c45d5e0cp1@CDH20
1.88e-59FFCP PHASE1:Hg19::chr18:59000657..59000672,+#_929cd116586c0d17c8aa9786c45d5e0cp1@CDH20
8.39e-59FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_883bc2a2c682f45d8fccf305c0e8a00ep6@GPM6B
8.39e-59FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_883bc2a2c682f45d8fccf305c0e8a00ep6@GPM6B
9.87e-59FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_4e527aac956937cf604f3ec29d1c594ap1@ANKFN1
9.87e-59FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_4e527aac956937cf604f3ec29d1c594ap1@ANKFN1
2.74e-58FFCP PHASE1:Hg19::chr8:132053136..132053177,-#_eb67d1ec239ce093126c87e793f8df79p2@ADCY8
2.74e-58FFCP PHASE2:Hg19::chr8:132053136..132053177,-#_eb67d1ec239ce093126c87e793f8df79p2@ADCY8
3.3e-58FFCP PHASE1:Hg19::chr11:62474885..62474903,-#_8b5db85de12e0dcf4a8d8d6d0820ea87p5@BSCL2
3.3e-58FFCP PHASE2:Hg19::chr11:62474885..62474903,-#_8b5db85de12e0dcf4a8d8d6d0820ea87p5@BSCL2
3.49e-58FFCP PHASE1:Hg19::chr9:19789028..19789050,-#_c04c15213470c0d4c6146d5c8d0e2d43p1@SLC24A2
3.49e-58FFCP PHASE2:Hg19::chr9:19789028..19789050,-#_c04c15213470c0d4c6146d5c8d0e2d43p1@SLC24A2
1.03e-57FFCP PHASE2:Hg19::chr2:210526233..210526258,+#_7ec70f35c625ea6335bcf3784cb2b32bp9@MAP2
1.03e-57FFCP PHASE1:Hg19::chr2:210526233..210526258,+#_7ec70f35c625ea6335bcf3784cb2b32bp9@MAP2
2.3e-57FFCP PHASE1:Hg19::chr8:30496078..30496130,+#_2b1f0d1cc844935433ecbde7c9af20b3p1@LOC100507341
2.3e-57FFCP PHASE2:Hg19::chr8:30496078..30496130,+#_2b1f0d1cc844935433ecbde7c9af20b3p1@LOC100507341
2.58e-57FFCP PHASE1:Hg19::chr10:62149542..62149590,-#_a5d22696d4fec535ee16027fe9f672dbp1@ANK3
2.58e-57FFCP PHASE2:Hg19::chr10:62149542..62149590,-#_a5d22696d4fec535ee16027fe9f672dbp1@ANK3
2.86e-57FFCP PHASE2:Hg19::chr11:105481612..105481624,+#_6df24d1ddff43f168fac7d5e06301aa1p2@GRIA4
2.86e-57FFCP PHASE1:Hg19::chr11:105481612..105481624,+#_6df24d1ddff43f168fac7d5e06301aa1p2@GRIA4
3.09e-57FFCP PHASE1:Hg19::chr8:9953136..9953190,+#_a31cf71963d3ce82876a55bc1cdd65c7p3@MSRA
3.09e-57FFCP PHASE2:Hg19::chr8:9953136..9953190,+#_a31cf71963d3ce82876a55bc1cdd65c7p3@MSRA
7.06e-57FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_dc9fd962cf0390a0b39b36af959a8338p2@RFX4
7.06e-57FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_dc9fd962cf0390a0b39b36af959a8338p2@RFX4
9.33e-57FFCP PHASE2:Hg19::chr2:210526166..210526232,+#_7e2d2e42fd32c80293bbfa0329b0d016p5@MAP2
9.33e-57FFCP PHASE1:Hg19::chr2:210526166..210526232,+#_7e2d2e42fd32c80293bbfa0329b0d016p5@MAP2
9.72e-57FFCP PHASE2:Hg19::chr5:11904580..11904619,-#_73ca2422e4672c01cf0a0e9706717d5dp6@CTNND2
9.72e-57FFCP PHASE1:Hg19::chr5:11904580..11904619,-#_73ca2422e4672c01cf0a0e9706717d5dp6@CTNND2
1.1e-56FFCP PHASE2:Hg19::chr17:43972989..43973035,-#_73905aacfa1ce2c26ee622888ec1208dp1@LOC100128977
1.1e-56FFCP PHASE1:Hg19::chr17:43972989..43973035,-#_73905aacfa1ce2c26ee622888ec1208dp1@LOC100128977
1.39e-56FFCP PHASE2:Hg19::chr5:87437585..87437647,+#_92633ed088d9bde391a5e8b6bfa5f811p@chr5:87437585..87437647, +
1.39e-56FFCP PHASE1:Hg19::chr5:87437585..87437647,+#_92633ed088d9bde391a5e8b6bfa5f811p@chr5:87437585..87437647, +
1.39e-56FFCP PHASE2:Hg19::chr19:46932128..46932207,-#_92633ed088d9bde391a5e8b6bfa5f811p@chr19:46932128..46932207, -
1.39e-56FFCP PHASE1:Hg19::chr19:46932128..46932207,-#_92633ed088d9bde391a5e8b6bfa5f811p@chr19:46932128..46932207, -
1.4e-56FFCP PHASE2:Hg19::chr11:105481405..105481472,+#_b8195be00f3ca3adafcf87df1687eb15p1@GRIA4
1.4e-56FFCP PHASE1:Hg19::chr11:105481405..105481472,+#_b8195be00f3ca3adafcf87df1687eb15p1@GRIA4
1.65e-56FFCP PHASE2:Hg19::chr4:176733558..176733609,-#_8eedb2dc871f751ad59e62b927d5e8e9p7@GPM6A
1.65e-56FFCP PHASE1:Hg19::chr4:176733558..176733609,-#_8eedb2dc871f751ad59e62b927d5e8e9p7@GPM6A
2.03e-56FFCP PHASE2:Hg19::chr1:205012293..205012326,+#_d8851b1b60f4a0d7c7436cdf9e6eae02p2@CNTN2
2.03e-56FFCP PHASE1:Hg19::chr1:205012293..205012326,+#_d8851b1b60f4a0d7c7436cdf9e6eae02p2@CNTN2
5.74e-56FFCP PHASE2:Hg19::chr4:176733377..176733424,-#_a94fa51bee20af439a5af8b85f0260f9p1@GPM6A
5.74e-56FFCP PHASE1:Hg19::chr4:176733377..176733424,-#_a94fa51bee20af439a5af8b85f0260f9p1@GPM6A
7.08e-56FFCP PHASE2:Hg19::chr12:20848486..20848542,+#_952e98e933b3268ebeab837458707bf0p1@SLCO1C1
7.08e-56FFCP PHASE1:Hg19::chr12:20848486..20848542,+#_952e98e933b3268ebeab837458707bf0p1@SLCO1C1
7.16e-56FFCP PHASE2:Hg19::chr9:19789059..19789070,-#_d45b08ebb750a93ec30ddb0ce1f0853fp2@SLC24A2
7.16e-56FFCP PHASE1:Hg19::chr9:19789059..19789070,-#_d45b08ebb750a93ec30ddb0ce1f0853fp2@SLC24A2
7.49e-56FFCP PHASE1:Hg19::chr11:105480793..105480845,+#_b2fd2f086c396827ebc8f3e37459dbb1p3@GRIA4
7.49e-56FFCP PHASE2:Hg19::chr11:105480793..105480845,+#_b2fd2f086c396827ebc8f3e37459dbb1p3@GRIA4
1.31e-55FFCP PHASE1:Hg19::chr3:181417353..181417371,+#_3a4d1819e2837cf9538a32d186bdd4d2p1@SOX2-OT
1.31e-55FFCP PHASE2:Hg19::chr3:181417353..181417371,+#_3a4d1819e2837cf9538a32d186bdd4d2p1@SOX2-OT
1.32e-55FFCP PHASE2:Hg19::chr4:176733425..176733439,-#_1784a5dc1d3e27b56441580827ee386ep8@GPM6A
1.32e-55FFCP PHASE1:Hg19::chr4:176733425..176733439,-#_1784a5dc1d3e27b56441580827ee386ep8@GPM6A
1.35e-55FFCP PHASE1:Hg19::chr8:9953735..9953778,+#_ed41ed1a79f09c4557132a511e615558p@chr8:9953735..9953778, +
1.35e-55FFCP PHASE2:Hg19::chr8:9953735..9953778,+#_ed41ed1a79f09c4557132a511e615558p@chr8:9953735..9953778, +
1.39e-55FFCP PHASE1:Hg19::chr3:47933982..47934047,-#_a99d140139b3daa36b60fc578799c801p3@MAP4
1.39e-55FFCP PHASE2:Hg19::chr3:47933982..47934047,-#_a99d140139b3daa36b60fc578799c801p3@MAP4
1.59e-55FFCP PHASE2:Hg19::chr3:181417374..181417407,+#_835dc45e16b704599660bbafb1367c9ep2@SOX2-OT
1.59e-55FFCP PHASE1:Hg19::chr3:181417374..181417407,+#_835dc45e16b704599660bbafb1367c9ep2@SOX2-OT
1.87e-55FFCP PHASE2:Hg19::chr21:42219168..42219187,-#_02af06e9cd13374a0a7c44d49c227f1dp2@DSCAM
1.87e-55FFCP PHASE1:Hg19::chr21:42219168..42219187,-#_02af06e9cd13374a0a7c44d49c227f1dp2@DSCAM
2.95e-55FFCP PHASE2:Hg19::chr12:99288536..99288653,-#_c75fb64c17a636ed4f90be1048b70c76p1@ANKS1B
2.95e-55FFCP PHASE1:Hg19::chr12:99288536..99288653,-#_c75fb64c17a636ed4f90be1048b70c76p1@ANKS1B
4.14e-55FFCP PHASE1:Hg19::chr17:49124154..49124169,-#_1948d2d34a2814015819470a4297828ep6@SPAG9
4.14e-55FFCP PHASE2:Hg19::chr17:49124154..49124169,-#_1948d2d34a2814015819470a4297828ep6@SPAG9
7.57e-55FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_365c6e86eb9e8af239cdec42b092b976p1@RFX4
7.57e-55FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_365c6e86eb9e8af239cdec42b092b976p1@RFX4
7.83e-55FFCP PHASE1:Hg19::chr17:42984601..42984636,-#_f9f8d592defba5024a722ff288c6308bp2@GFAP
7.83e-55FFCP PHASE2:Hg19::chr17:42984601..42984636,-#_f9f8d592defba5024a722ff288c6308bp2@GFAP
8.99e-55FFCP PHASE1:Hg19::chr2:210444402..210444423,+#_929d3befec608e3750cd24efbceb3f1bp11@MAP2
8.99e-55FFCP PHASE2:Hg19::chr2:210444402..210444423,+#_929d3befec608e3750cd24efbceb3f1bp11@MAP2
9.16e-55FFCP PHASE1:Hg19::chrX:151619746..151619815,-#_cf67bb678a1290e84efd16b6b0c8240fp1@GABRA3
9.16e-55FFCP PHASE2:Hg19::chrX:151619746..151619815,-#_cf67bb678a1290e84efd16b6b0c8240fp1@GABRA3
1.03e-54FFCP PHASE1:Hg19::chr14:60097524..60097538,-#_f14d4758b89289581ddd97b2fdb0bfd1p3@RTN1
1.03e-54FFCP PHASE2:Hg19::chr14:60097524..60097538,-#_f14d4758b89289581ddd97b2fdb0bfd1p3@RTN1
1.14e-54FFCP PHASE1:Hg19::chr2:210444267..210444287,+#_d0db3346fde2209a0a9f86a5e369c8cep7@MAP2
1.14e-54FFCP PHASE2:Hg19::chr2:210444267..210444287,+#_d0db3346fde2209a0a9f86a5e369c8cep7@MAP2
1.16e-54FFCP PHASE2:Hg19::chr17:43972010..43972027,+#_f69b2c77a66f08ccb0832a56230b7b3ap4@MAPT
1.16e-54FFCP PHASE1:Hg19::chr17:43972010..43972027,+#_f69b2c77a66f08ccb0832a56230b7b3ap4@MAPT
1.28e-54FFCP PHASE2:Hg19::chr2:210444345..210444394,+#_3a63f1323beb3be125debe5d92928bc8p3@MAP2
1.28e-54FFCP PHASE1:Hg19::chr19:10563567..10563617,+#_3a63f1323beb3be125debe5d92928bc8p1@PDE4A
1.28e-54FFCP PHASE2:Hg19::chr19:10563567..10563617,+#_3a63f1323beb3be125debe5d92928bc8p1@PDE4A
1.28e-54FFCP PHASE1:Hg19::chr2:210444345..210444394,+#_3a63f1323beb3be125debe5d92928bc8p3@MAP2
2.04e-54FFCP PHASE2:Hg19::chrX:13835124..13835142,-#_68d5d6c4bdf2d7011a211380044aabbfp5@GPM6B
2.04e-54FFCP PHASE1:Hg19::chrX:13835124..13835142,-#_68d5d6c4bdf2d7011a211380044aabbfp5@GPM6B
2.23e-54FFCP PHASE2:Hg19::chr1:177134024..177134052,-#_998ec847647bacb6a1e14471aef37b17p2@ASTN1
2.23e-54FFCP PHASE1:Hg19::chr1:177134024..177134052,-#_998ec847647bacb6a1e14471aef37b17p2@ASTN1

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