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{{UBERON
{{UBERON
|id=UBERON:0003323
|alt_id=
|name=mesenchyme of upper jaw
|namespace=
|def="A mesenchyme that is part of a upper jaw [Obol]." [OBOL:automatic]
|xref=EHDAA:8031;;EHDAA2:0002124;;EMAPA:17929;;VHOG:0001099
|is_a=UBERON:0003104
|synonym="mesenchyme of palatoquadrate arch" EXACT [OBOL:automatic];;"palatoquadrate arch mesenchyme" EXACT [OBOL:automatic];;"upper jaw mesenchyme" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A mesenchyme that is part of a upper jaw [Obol]." [OBOL:automatic]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0009526
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003323
|is_a=UBERON:0004119 ;;UBERON:0004121 ;;UBERON:0009891 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|name=mesenchyme of upper jaw
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001709
|part_of=UBERON:0001709
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="mesenchyme of palatoquadrate arch" EXACT [OBOL:automatic];;"palatoquadrate arch mesenchyme" EXACT [OBOL:automatic];;"upper jaw mesenchyme" EXACT [OBOL:automatic]
|union_of=
|xref=EHDAA2:0002124;;EHDAA:8031;;EMAPA:17929;;VHOG:0001099
}}
}}

Latest revision as of 17:39, 12 September 2014

Name:mesenchyme of upper jaw
Namespace:FANTOM
Definition:"A mesenchyme that is part of a upper jaw [Obol]." [OBOL:automatic]
Xrefs:
links:

EHDAA2:0002124
EHDAA:8031
EMAPA:17929

VHOG:0001099
Synonyms: "mesenchyme of palatoquadrate arch" EXACT [OBOL:automatic]
"palatoquadrate arch mesenchyme" EXACT [OBOL:automatic]
"upper jaw mesenchyme" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004119(endoderm-derived structure),UBERON:0004121(ectoderm-derived structure),UBERON:0009891(facial mesenchyme),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0009526(maxillary process mesenchyme)
part_of:UBERON:0001709(upper jaw region)



Children

is a:UBERON:0005705 (primary palate mesenchyme)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003323 (mesenchyme of upper jaw), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_28635acd2eaa1c9511b2aa7f936b9448p14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_28635acd2eaa1c9511b2aa7f936b9448p14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_9bb8b10a213c6689fd8e703199815decp13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_9bb8b10a213c6689fd8e703199815decp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_9bb8b10a213c6689fd8e703199815decp13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_9bb8b10a213c6689fd8e703199815decp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_9bb8b10a213c6689fd8e703199815decp12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_9bb8b10a213c6689fd8e703199815decp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_9bb8b10a213c6689fd8e703199815decp12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_9bb8b10a213c6689fd8e703199815decp@chr8:57353655..57353662, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_bb7de7f92a9987d2e230ab1e7d8273a9p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_bb7de7f92a9987d2e230ab1e7d8273a9p14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_bb7de7f92a9987d2e230ab1e7d8273a9p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_bb7de7f92a9987d2e230ab1e7d8273a9p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_8945826718652e3824260a49726f7a08p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_8945826718652e3824260a49726f7a08p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_af1f4c83a82a3486ff837f3a61dd4b06p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_af1f4c83a82a3486ff837f3a61dd4b06p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_af1f4c83a82a3486ff837f3a61dd4b06p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_af1f4c83a82a3486ff837f3a61dd4b06p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_af1f4c83a82a3486ff837f3a61dd4b06p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_af1f4c83a82a3486ff837f3a61dd4b06p17@RSRC1
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_2640cf6fdfbde0ed7e31452d996972cbp@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_2640cf6fdfbde0ed7e31452d996972cbp@chr8:57802672..57802682, -
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_af6ff18d31b9b24f589e1ec6e432397cp7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_af6ff18d31b9b24f589e1ec6e432397cp1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_af6ff18d31b9b24f589e1ec6e432397cp@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_af6ff18d31b9b24f589e1ec6e432397cp@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_af6ff18d31b9b24f589e1ec6e432397cp1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_af6ff18d31b9b24f589e1ec6e432397cp7@ALX1
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_57d7c9b3bd2006081eefe967d0d99f36p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_57d7c9b3bd2006081eefe967d0d99f36p23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_57d7c9b3bd2006081eefe967d0d99f36p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_57d7c9b3bd2006081eefe967d0d99f36p@chr2:33519090..33519092, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_da6bbd730252693f7229f40b00debd72p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_da6bbd730252693f7229f40b00debd72p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_da6bbd730252693f7229f40b00debd72p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_da6bbd730252693f7229f40b00debd72p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_da6bbd730252693f7229f40b00debd72p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_da6bbd730252693f7229f40b00debd72p@chr8:57353779..57353790, -
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_8bc495f6d9f7f5e494944fcb297e0120p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_8bc495f6d9f7f5e494944fcb297e0120p8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_8bc495f6d9f7f5e494944fcb297e0120p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_8bc495f6d9f7f5e494944fcb297e0120p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_8bc495f6d9f7f5e494944fcb297e0120p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_8bc495f6d9f7f5e494944fcb297e0120p8@LHX8
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_202276053b38d5269cd5d0ecd74f2144p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_202276053b38d5269cd5d0ecd74f2144p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_202276053b38d5269cd5d0ecd74f2144p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_202276053b38d5269cd5d0ecd74f2144p@chr5:75912831..75912842, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_4ec876403d002b4dec4b4135b8bbd46dp@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_4ec876403d002b4dec4b4135b8bbd46dp@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_4ec876403d002b4dec4b4135b8bbd46dp@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_4ec876403d002b4dec4b4135b8bbd46dp@chr6:46190219..46190230, -
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_ad2ba4833510dc6e0d3a3b8e7a5fb75fp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_ad2ba4833510dc6e0d3a3b8e7a5fb75fp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_ad2ba4833510dc6e0d3a3b8e7a5fb75fp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_ad2ba4833510dc6e0d3a3b8e7a5fb75fp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_ad2ba4833510dc6e0d3a3b8e7a5fb75fp5@PENK
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_ad2ba4833510dc6e0d3a3b8e7a5fb75fp4@CPZ
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_2da0e59bf1d5f2b97264541bdcc04e45p9@SIX1
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_2da0e59bf1d5f2b97264541bdcc04e45p9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_2568c8e85a02c9ca2cd1886c3cd87a43p@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_2568c8e85a02c9ca2cd1886c3cd87a43p@chr6:134327986..134327991, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_520c53de7de2b76d1a1724a2817ee6c5p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_520c53de7de2b76d1a1724a2817ee6c5p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_520c53de7de2b76d1a1724a2817ee6c5p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_520c53de7de2b76d1a1724a2817ee6c5p@chr8:57353676..57353688, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_11ec1f58c6c207b48d1eb1c6ae277bc5p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_11ec1f58c6c207b48d1eb1c6ae277bc5p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_11ec1f58c6c207b48d1eb1c6ae277bc5p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_11ec1f58c6c207b48d1eb1c6ae277bc5p4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_11ec1f58c6c207b48d1eb1c6ae277bc5p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_11ec1f58c6c207b48d1eb1c6ae277bc5p@chr5:19721484..19721507, -
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_8daa6bcb495e13c8ee1aab865de3b8e9p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_8daa6bcb495e13c8ee1aab865de3b8e9p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_8daa6bcb495e13c8ee1aab865de3b8e9p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_8daa6bcb495e13c8ee1aab865de3b8e9p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_8daa6bcb495e13c8ee1aab865de3b8e9p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_8daa6bcb495e13c8ee1aab865de3b8e9p@chr8:57354360..57354367, +
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_70e28576279e89ec039b5e07d20547bbp7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_70e28576279e89ec039b5e07d20547bbp10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_70e28576279e89ec039b5e07d20547bbp10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_70e28576279e89ec039b5e07d20547bbp7@SHOX2
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_b703f2c7e95eb19e57b5a7adf7ffbb6cp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_b703f2c7e95eb19e57b5a7adf7ffbb6cp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_b703f2c7e95eb19e57b5a7adf7ffbb6cp@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_b703f2c7e95eb19e57b5a7adf7ffbb6cp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_b703f2c7e95eb19e57b5a7adf7ffbb6cp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_b703f2c7e95eb19e57b5a7adf7ffbb6cp@chr22:28193943..28193956, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_488bed99401103bebb37676a81172843p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_488bed99401103bebb37676a81172843p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_04da9138d3b6940bf3bf9ee977ada00ep18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_04da9138d3b6940bf3bf9ee977ada00ep@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_04da9138d3b6940bf3bf9ee977ada00ep18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_04da9138d3b6940bf3bf9ee977ada00ep@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_04da9138d3b6940bf3bf9ee977ada00ep@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_04da9138d3b6940bf3bf9ee977ada00ep@chr8:57359975..57359992, -
4.2e-29FFCP PHASE2:Hg19::chr15:52606315..52606320,-#_8f57fc24614143d18cefd77b04bd7785p@chr15:52606315..52606320, -
4.2e-29FFCP PHASE2:Hg19::chr10:28033565..28033575,-#_8f57fc24614143d18cefd77b04bd7785p@chr10:28033565..28033575, -

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