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{{UBERON
{{UBERON
|id=UBERON:0002020
|alt_id=UBERON:FMA_67242-MA_0001112
|name=gray matter of neuraxis
|namespace=
|def="Heterogeneous cluster of neural somas in the brain and the spinal cord." [Wikipedia:Gray_matter]
|xref=AEO:0000136;;EHDAA2:0003136;;EHDAA2:0004658;;FMA:67242;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png;;MA:0001112;;ncithesaurus:Gray_Matter;;OpenCyc:Mx4rwDdKMpwpEbGdrcN5Y29ycA;;TAO:0002197;;ZFA:0001681
|is_a=UBERON:0000477;;UBERON:0004121
|synonym="gray mater" RELATED [ZFA:0001681];;"gray matter" EXACT [];;"grey matter" EXACT [];;"grey substance" EXACT [];;"neuronal grey matter" EXACT [EHDAA2:0004658];;"substantia grisea" EXACT [FMA:67242, FMA:TA]
|comment=
|comment=
|alt_id=UBERON:FMA_67242-MA_0001112
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Heterogeneous cluster of neural somas in the brain and the spinal cord." [Wikipedia:Gray_matter]
|subset=uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002020
|is_a=UBERON:0011215
|is_obsolete=
|located_in=
|located_in=
|name=gray matter
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001017
|part_of=UBERON:0001017
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Multi-tissue comprised of neurons, dendrites, axon terminals, glial cells, and capillaries.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Multi-tissue comprised of neurons, dendrites, axon terminals, glial cells, and capillaries.[TAO]" xsd:string
|is_obsolete=
|subset=uberon_slim;;vertebrate_core
|preceded_by=
|synonym="gray mater" RELATED [ZFA:0001681];;"gray matter" EXACT [];;"grey matter" EXACT [];;"grey substance" EXACT [];;"neuronal grey matter" EXACT [EHDAA2:0004658];;"substantia grisea" EXACT [FMA:67242, FMA:TA]
|union_of=
|xref=AEO:0000136;;EHDAA2:0003136;;EHDAA2:0004658;;FMA:67242;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png;;MA:0001112;;ncithesaurus:Gray_Matter;;OpenCyc:Mx4rwDdKMpwpEbGdrcN5Y29ycA;;TAO:0002197;;ZFA:0001681
}}
}}

Latest revision as of 17:24, 12 September 2014

Name:gray matter
Namespace:FANTOM
Definition:"Heterogeneous cluster of neural somas in the brain and the spinal cord." [Wikipedia:Gray_matter]
Xrefs:
links:

AEO:0000136
EHDAA2:0003136
EHDAA2:0004658
FMA:67242
[ 200px-Spinal_nerve.svg.png 200px-Spinal_nerve.svg.png]
MA:0001112
ncithesaurus:Gray_Matter
OpenCyc:Mx4rwDdKMpwpEbGdrcN5Y29ycA
TAO:0002197

ZFA:0001681
Synonyms: "gray mater" RELATED [ZFA:0001681]
"gray matter" EXACT []
"grey matter" EXACT []
"grey substance" EXACT []
"neuronal grey matter" EXACT [EHDAA2:0004658]
"substantia grisea" EXACT [FMA:67242, FMA:TA]
Alt_id: UBERON:FMA_67242-MA_0001112
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0011215(central nervous system cell part cluster)
part_of:UBERON:0001017(central nervous system)



Children

is a:UBERON:0002315 (gray matter of spinal cord),UBERON:0003528 (brain grey matter),UBERON:0007245 (nuclear complex of neuraxis)
part of:UBERON:0016548 (central nervous system gray matter layer)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002020 (gray matter), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.77e-120FFCP PHASE2:Hg19::chr11:49582389..49582417,+#_470c86f0784c4b493a0511b806ac2f7ap1@ENST00000527477, p1@ENST00000530858
2.77e-120FFCP PHASE1:Hg19::chr11:49582389..49582417,+#_470c86f0784c4b493a0511b806ac2f7ap1@ENST00000527477, p1@ENST00000530858
3.69e-119FFCP PHASE2:Hg19::chr14:24047743..24047754,-#_2ea7877c67c09ae33c18909fbc52e19ep12@JPH4
3.69e-119FFCP PHASE1:Hg19::chr14:24047743..24047754,-#_2ea7877c67c09ae33c18909fbc52e19ep12@JPH4
3.97e-118FFCP PHASE2:Hg19::chr12:11652664..11652681,+#_da807845d601ffe55082aca6b021b186p@chr12:11652664..11652681, +
3.97e-118FFCP PHASE1:Hg19::chr12:11652664..11652681,+#_da807845d601ffe55082aca6b021b186p@chr12:11652664..11652681, +
2.4e-117FFCP PHASE1:Hg19::chr4:6474472..6474528,-#_01b52e2cdaf3620c6dba7aa286fbf654p6@PPP2R2C
2.4e-117FFCP PHASE2:Hg19::chr4:6474472..6474528,-#_01b52e2cdaf3620c6dba7aa286fbf654p6@PPP2R2C
2.24e-116FFCP PHASE1:Hg19::chr2:210444748..210444770,+#_24c73b958ddbb82c47a9dbb7bd635a9fp20@MAP2
2.24e-116FFCP PHASE2:Hg19::chr2:210444748..210444770,+#_24c73b958ddbb82c47a9dbb7bd635a9fp20@MAP2
6.97e-116FFCP PHASE1:Hg19::chr7:150748288..150748337,+#_7690847063fc481ca7292f3df745d463p1@ACCN3
6.97e-116FFCP PHASE2:Hg19::chr7:150748288..150748337,+#_7690847063fc481ca7292f3df745d463p1@ACCN3
4.01e-115FFCP PHASE2:Hg19::chr19:54462732..54462743,+#_8f73de82481c4eaccaec2dc3b13c461bp@chr19:54462732..54462743, +
4.01e-115FFCP PHASE1:Hg19::chr19:54462732..54462743,+#_8f73de82481c4eaccaec2dc3b13c461bp@chr19:54462732..54462743, +
1.14e-114FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_cf5ea7b585d0ac7753c7f4e8f09b8663p3@GRIN2B
1.14e-114FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_cf5ea7b585d0ac7753c7f4e8f09b8663p3@GRIN2B
3.44e-114FFCP PHASE1:Hg19::chr19:55794942..55794982,+#_95ba889863eabdff12b54cd5c19480e8p@chr19:55794942..55794982, +
3.44e-114FFCP PHASE2:Hg19::chr19:55794942..55794982,+#_95ba889863eabdff12b54cd5c19480e8p@chr19:55794942..55794982, +
4.09e-114FFCP PHASE1:Hg19::chr2:115200192..115200244,+#_b209b07002ff1a3a7d197b76d489138fp3@DPP10
4.09e-114FFCP PHASE2:Hg19::chr2:115200192..115200244,+#_b209b07002ff1a3a7d197b76d489138fp3@DPP10
5.07e-114FFCP PHASE1:Hg19::chr19:54462276..54462325,+#_1a1b6c1446a4594b731f852fc0763b93p@chr19:54462276..54462325, +
5.07e-114FFCP PHASE2:Hg19::chr19:54462276..54462325,+#_1a1b6c1446a4594b731f852fc0763b93p@chr19:54462276..54462325, +
1.45e-113FFCP PHASE2:Hg19::chr16:24267508..24267525,+#_59b0d97de39b6d8f4cd38b1daa12a787p4@CACNG3
1.45e-113FFCP PHASE1:Hg19::chr16:24267508..24267525,+#_59b0d97de39b6d8f4cd38b1daa12a787p4@CACNG3
2.01e-113FFCP PHASE2:Hg19::chr20:1975321..1975338,-#_545fb54463dea4caa7e34dad1c259d37p3@PDYN
2.01e-113FFCP PHASE1:Hg19::chr20:1975321..1975338,-#_545fb54463dea4caa7e34dad1c259d37p3@PDYN
9.5e-113FFCP PHASE2:Hg19::chr5:160975135..160975218,-#_4ef46f7019fe253281a1f4c65a6ae54cp3@GABRB2
9.5e-113FFCP PHASE1:Hg19::chr5:160975135..160975218,-#_4ef46f7019fe253281a1f4c65a6ae54cp3@GABRB2
1.47e-112FFCP PHASE2:Hg19::chr11:133402367..133402378,-#_3182ca22496273652175177ce3b13086p8@OPCML
1.47e-112FFCP PHASE1:Hg19::chr11:133402367..133402378,-#_3182ca22496273652175177ce3b13086p8@OPCML
2.02e-112FFCP PHASE1:Hg19::chr12:14134636..14134651,-#_d2e3948bf81dfae6f4edee89166d47bcp@chr12:14134636..14134651, -
2.02e-112FFCP PHASE2:Hg19::chr12:14134636..14134651,-#_d2e3948bf81dfae6f4edee89166d47bcp@chr12:14134636..14134651, -
4.68e-112FFCP PHASE2:Hg19::chr4:6474536..6474563,-#_d3d739312bd747754f0ebcd4df0e95b6p9@PPP2R2C
4.68e-112FFCP PHASE1:Hg19::chr4:6474536..6474563,-#_d3d739312bd747754f0ebcd4df0e95b6p9@PPP2R2C
2.32e-111FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_5384a56eeb47b45f7c7ef3b951f424c2p5@ST8SIA3
2.32e-111FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_5384a56eeb47b45f7c7ef3b951f424c2p5@ST8SIA3
2.51e-111FFCP PHASE1:Hg19::chr19:54462535..54462548,+#_ea5ea24ea582345059feec7cb3ffd1e4p@chr19:54462535..54462548, +
2.51e-111FFCP PHASE2:Hg19::chr19:54462535..54462548,+#_ea5ea24ea582345059feec7cb3ffd1e4p@chr19:54462535..54462548, +
4.73e-111FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_224ac3202b362816628e8520fa296bdep5@OPCML
4.73e-111FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_224ac3202b362816628e8520fa296bdep5@OPCML
8.62e-111FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_8e9667d6ed1964b4a4bb8459d64e40bep@chr5:80255907..80255942, +
8.62e-111FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_8e9667d6ed1964b4a4bb8459d64e40bep@chr5:80255907..80255942, +
2.43e-110FFCP PHASE1:Hg19::chr6:62390886..62390903,-#_8f4cd3850d82c6f8375fdbabc429906cp1@ENST00000511849
2.43e-110FFCP PHASE2:Hg19::chr6:62390886..62390903,-#_8f4cd3850d82c6f8375fdbabc429906cp1@ENST00000511849
3.36e-110FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_6fc1c35a64b5022b37b539a21ca0a8fep1@NR2E1
3.36e-110FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_6fc1c35a64b5022b37b539a21ca0a8fep1@NR2E1
5.09e-110FFCP PHASE1:Hg19::chr9:112629512..112629528,+#_e01d911e203b8ba9aae3be9f0baa27f2p7@PALM2
5.09e-110FFCP PHASE2:Hg19::chr9:112629512..112629528,+#_e01d911e203b8ba9aae3be9f0baa27f2p7@PALM2
8.14e-110FFCP PHASE1:Hg19::chrX:152939089..152939119,-#_414c4626ba585183a81ed540159c3566p2@PNCK
8.14e-110FFCP PHASE2:Hg19::chrX:152939089..152939119,-#_414c4626ba585183a81ed540159c3566p2@PNCK
3.28e-109FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_242bb85c96cec9626d622f406dc08787p2@CDH9
3.28e-109FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_242bb85c96cec9626d622f406dc08787p2@CDH9
8.01e-109FFCP PHASE2:Hg19::chr19:54462010..54462060,+#_7f5c0a1d7fe789db57c57e3ad8252007p@chr19:54462010..54462060, +
8.01e-109FFCP PHASE1:Hg19::chr19:54462010..54462060,+#_7f5c0a1d7fe789db57c57e3ad8252007p@chr19:54462010..54462060, +
8.43e-109FFCP PHASE1:Hg19::chr9:112629781..112629806,+#_5f4b3a1abc3ccf7b08d0f3f86f49163fp14@PALM2-AKAP2
8.43e-109FFCP PHASE2:Hg19::chr9:112629781..112629806,+#_5f4b3a1abc3ccf7b08d0f3f86f49163fp14@PALM2-AKAP2
1.04e-108FFCP PHASE1:Hg19::chr15:80735246..80735321,+#_4059d0fec73f1ad2fa60f0316622c0cep3@ARNT2
1.04e-108FFCP PHASE2:Hg19::chr15:80735246..80735321,+#_4059d0fec73f1ad2fa60f0316622c0cep3@ARNT2
1.61e-108FFCP PHASE2:Hg19::chr11:89867681..89867695,+#_abd96a01521673d735911ab797b97fd9p2@NAALAD2
1.61e-108FFCP PHASE1:Hg19::chr11:89867681..89867695,+#_abd96a01521673d735911ab797b97fd9p2@NAALAD2
2.01e-108FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_a271d6ea2795e018df2e5fd35a114995p8@LRRC7
2.01e-108FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_a271d6ea2795e018df2e5fd35a114995p8@LRRC7
2.37e-108FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_af38c7c68b2d93f88badfdb486302243p@chr11:132982177..132982181, -
2.37e-108FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_af38c7c68b2d93f88badfdb486302243p@chr11:132982177..132982181, -
3.44e-108FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_89713d873dfcf0fe4b3cf2911e42e0d0p2@TIAM2
3.44e-108FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_89713d873dfcf0fe4b3cf2911e42e0d0p2@TIAM2
3.59e-108FFCP PHASE1:Hg19::chr19:54462560..54462571,+#_653db98cb04976597a72d7315f469b11p@chr19:54462560..54462571, +
3.59e-108FFCP PHASE2:Hg19::chr19:54462560..54462571,+#_653db98cb04976597a72d7315f469b11p@chr19:54462560..54462571, +
4.72e-108FFCP PHASE1:Hg19::chr17:77090555..77090587,-#_849bdd5cdbbc25369b232d0fe9e38aedp@chr17:77090555..77090587, -
4.72e-108FFCP PHASE2:Hg19::chr17:77090555..77090587,-#_849bdd5cdbbc25369b232d0fe9e38aedp@chr17:77090555..77090587, -
8.45e-108FFCP PHASE2:Hg19::chr2:8595510..8595529,-#_c0aabc4f675394a6af138790d92e378cp@chr2:8595510..8595529, -
8.45e-108FFCP PHASE1:Hg19::chr2:8595510..8595529,-#_c0aabc4f675394a6af138790d92e378cp@chr2:8595510..8595529, -
1.02e-107FFCP PHASE1:Hg19::chr20:1975298..1975316,-#_51fe512658afe0fb0bf5a36f5e72b23fp2@PDYN
1.02e-107FFCP PHASE2:Hg19::chr20:1975298..1975316,-#_51fe512658afe0fb0bf5a36f5e72b23fp2@PDYN
1.13e-107FFCP PHASE2:Hg19::chr4:46392290..46392324,-#_39b3fdbb653ad25f3596192faaf6ca8fp13@GABRA2
1.13e-107FFCP PHASE1:Hg19::chr4:46392290..46392324,-#_39b3fdbb653ad25f3596192faaf6ca8fp13@GABRA2
1.19e-107FFCP PHASE2:Hg19::chr16:56390359..56390376,+#_f1d5e0ee4b19ae76848be896da10608bp@chr16:56390359..56390376, +
1.19e-107FFCP PHASE1:Hg19::chr16:56390359..56390376,+#_f1d5e0ee4b19ae76848be896da10608bp@chr16:56390359..56390376, +
1.24e-107FFCP PHASE1:Hg19::chr1:156119798..156119834,+#_68f22b0baf990ffac19771cb85de21cdp5@SEMA4A
1.24e-107FFCP PHASE2:Hg19::chr1:156119798..156119834,+#_68f22b0baf990ffac19771cb85de21cdp5@SEMA4A
1.31e-107FFCP PHASE1:Hg19::chr7:54609764..54609789,+#_7f0013ff6e29f5a4dc5ef45f5b2a578fp8@VSTM2A
1.31e-107FFCP PHASE2:Hg19::chr7:54609764..54609789,+#_7f0013ff6e29f5a4dc5ef45f5b2a578fp8@VSTM2A
1.91e-107FFCP PHASE2:Hg19::chr12:14134689..14134704,-#_98b775a2353fd6cda4b273a099e6d51ap@chr12:14134689..14134704, -
1.91e-107FFCP PHASE1:Hg19::chr12:14134689..14134704,-#_98b775a2353fd6cda4b273a099e6d51ap@chr12:14134689..14134704, -
2.32e-107FFCP PHASE1:Hg19::chr12:14133820..14133830,-#_74ed83e5da24d761171114471f118962p@chr12:14133820..14133830, -
2.32e-107FFCP PHASE2:Hg19::chr12:14133820..14133830,-#_74ed83e5da24d761171114471f118962p@chr12:14133820..14133830, -
2.8e-107FFCP PHASE2:Hg19::chr12:57957885..57957898,+#_11b6e2c38e20193944049779f3320e6fp@chr12:57957885..57957898, +
2.8e-107FFCP PHASE1:Hg19::chr12:57957885..57957898,+#_11b6e2c38e20193944049779f3320e6fp@chr12:57957885..57957898, +
3.92e-107FFCP PHASE2:Hg19::chr6:101847075..101847092,+#_563b639352a0bf929926da1b562bece6p5@GRIK2
3.92e-107FFCP PHASE1:Hg19::chr6:101847075..101847092,+#_563b639352a0bf929926da1b562bece6p5@GRIK2
4.4e-107FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_a0608fe045ab65a46c4d1680d37c4ce2p8@PRKCZ
4.4e-107FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_a0608fe045ab65a46c4d1680d37c4ce2p8@PRKCZ
8.12e-107FFCP PHASE2:Hg19::chr20:34743645..34743687,-#_646a56b594ddd821d4cd8102714741acp1@ENST00000441208, p1@uc002xfa.1
8.12e-107FFCP PHASE1:Hg19::chr20:34743645..34743687,-#_646a56b594ddd821d4cd8102714741acp1@ENST00000441208, p1@uc002xfa.1
8.19e-107FFCP PHASE1:Hg19::chr2:196990526..196990535,-#_bcc5a8694c6aab54af154e3d2bea193bp@chr2:196990526..196990535, -
8.19e-107FFCP PHASE2:Hg19::chr2:196990526..196990535,-#_bcc5a8694c6aab54af154e3d2bea193bp@chr2:196990526..196990535, -
8.66e-107FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_1562fdbbae921ba7c7e852f936df3034p9@GPM6B
8.66e-107FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_1562fdbbae921ba7c7e852f936df3034p9@GPM6B
1.08e-106FFCP PHASE2:Hg19::chr16:24267634..24267671,+#_99a918dddd2db880dde12081a52491ffp2@CACNG3
1.08e-106FFCP PHASE1:Hg19::chr16:24267634..24267671,+#_99a918dddd2db880dde12081a52491ffp2@CACNG3










Property "Property value" (as page type) with input value "UBPROP:0000001 "Multi-tissue comprised of neurons, dendrites, axon terminals, glial cells, and capillaries.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002020&oldid=3277342"