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{{UBERON
{{UBERON
|id=UBERON:0000924
|alt_id=UBERON:FBbt_00000111-FMA_69070-MIAA_0000173-XAO_0000001-ZFA_0000016
|name=ectoderm
|namespace=
|def="Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [Wikipedia:Ectoderm]
|xref=AAO:0000137;;BILA:0000036;;BTO:0000315;;EFO:0000414;;EHDAA2:0000428;;EMAPA:16069;;EV:0100003;;FBbt:00000111;;FMA:69070;;GAID:1304;;MAT:0000155;;MAT:0000173;;MESH:A.16.254.425.273;;MIAA:0000173;;ncithesaurus:Ectoderm;;SCTID:362851007;;TAO:0000016;;VHOG:0000153;;XAO:0000001;;ZFA:0000016
|is_a=UBERON:0000923
|synonym="embryonic ectoderm" EXACT [VHOG:0000153]
|comment=
|comment=
|alt_id=UBERON:FBbt_00000111-FMA_69070-MIAA_0000173-XAO_0000001-ZFA_0000016
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [Wikipedia:Ectoderm]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0006601
|develops_from=UBERON:0006601
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000924
|is_a=UBERON:0000923
|is_obsolete=
|located_in=
|located_in=
|name=ectoderm
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Primary germ layer that is the outer of the embryonic germ layers and gives rise to epidermis and neural tissue.[AAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="embryonic ectoderm" EXACT [VHOG:0000153]
|union_of=
|xref=AAO:0000137;;BILA:0000036;;BTO:0000315;;EFO:0000414;;EHDAA2:0000428;;EMAPA:16069;;EV:0100003;;FBbt:00000111;;FMA:69070;;GAID:1304;;http://upload.wikimedia.org/wikipedia/commons/1/19/Gray32.png;;MAT:0000155;;MAT:0000173;;MESH:A.16.254.425.273;;MIAA:0000173;;ncithesaurus:Ectoderm;;SCTID:362851007;;TAO:0000016;;VHOG:0000153;;XAO:0000001;;ZFA:0000016
}}
}}

Latest revision as of 17:11, 12 September 2014

Name:ectoderm
Namespace:FANTOM
Definition:"Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [Wikipedia:Ectoderm]
Xrefs:
links:

AAO:0000137
BILA:0000036
BTO:0000315
EFO:0000414
EHDAA2:0000428
EMAPA:16069
EV:0100003
FBbt:00000111
FMA:69070
GAID:1304
[ Gray32.png Gray32.png]
MAT:0000155
MAT:0000173
MESH:A.16.254.425.273
MIAA:0000173
ncithesaurus:Ectoderm
SCTID:362851007
TAO:0000016
VHOG:0000153
XAO:0000001

ZFA:0000016
Synonyms: "embryonic ectoderm" EXACT [VHOG:0000153]
Alt_id: UBERON:FBbt_00000111-FMA_69070-MIAA_0000173-XAO_0000001-ZFA_0000016
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000923(germ layer)
develops_from:UBERON:0006601(presumptive ectoderm)



Children

develops from:UBERON:0000007 (pituitary gland),UBERON:0000078 (mixed ectoderm/mesoderm/endoderm-derived structure),UBERON:0001016 (nervous system),UBERON:0002346 (neurectoderm),UBERON:0004121 (ectoderm-derived structure),UBERON:0004906 (ectodermal part of digestive tract),UBERON:0005497 (non-neural ectoderm),UBERON:0006268 (notochordal process),UBERON:0008425 (mammary ridge),UBERON:0010371 (ecto-epithelium),UBERON:0016879 (future central nervous system)
part of:UBERON:0000076 (external ectoderm),CL:0000221 (ectodermal cell),UBERON:0000930 (stomodeum),UBERON:0003051 (ear vesicle),UBERON:0005085 (ectodermal placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000924 (ectoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.23e-62FFCP PHASE2:Hg19::chr11:31839488..31839515,-#_f778289b4536c5928b829e5882084fdep3@PAX6
3.23e-62FFCP PHASE1:Hg19::chr11:31839488..31839515,-#_f778289b4536c5928b829e5882084fdep3@PAX6
6.65e-62FFCP PHASE1:Hg19::chr1:197237352..197237414,+#_26cd31ed02b4e2c0a3c2ff037717a2e7p2@CRB1
6.65e-62FFCP PHASE2:Hg19::chr1:197237352..197237414,+#_26cd31ed02b4e2c0a3c2ff037717a2e7p2@CRB1
1.04e-61FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_764d12557d3c4257d2f8771fa77dc02dp3@CTNND2
1.04e-61FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_764d12557d3c4257d2f8771fa77dc02dp3@CTNND2
1.02e-60FFCP PHASE1:Hg19::chr5:87980761..87980821,-#_0598a6cd10cc618b21ed00af5076bc36p4@LINC00461
1.02e-60FFCP PHASE2:Hg19::chr5:87980761..87980821,-#_0598a6cd10cc618b21ed00af5076bc36p4@LINC00461
6.2e-60FFCP PHASE2:Hg19::chr6:123100738..123100763,+#_18c325b9fb152f9303c89148e96067aep2@FABP7
6.2e-60FFCP PHASE1:Hg19::chr6:123100738..123100763,+#_18c325b9fb152f9303c89148e96067aep2@FABP7
1.12e-59FFCP PHASE2:Hg19::chr11:62475005..62475041,-#_49d9d4b83ac570bcbc32a830dec0943cp6@BSCL2
1.12e-59FFCP PHASE1:Hg19::chr11:62475005..62475041,-#_49d9d4b83ac570bcbc32a830dec0943cp6@BSCL2
1.34e-59FFCP PHASE1:Hg19::chr4:165305086..165305179,-#_217780d8e2fcb45dbe3da62aa82d1d98p2@MARCH1
1.34e-59FFCP PHASE2:Hg19::chr4:165305086..165305179,-#_217780d8e2fcb45dbe3da62aa82d1d98p2@MARCH1
1.88e-59FFCP PHASE2:Hg19::chr18:59000657..59000672,+#_c8d17ed5b499d86e5b6977c6ff0d3d3cp1@CDH20
1.88e-59FFCP PHASE1:Hg19::chr18:59000657..59000672,+#_c8d17ed5b499d86e5b6977c6ff0d3d3cp1@CDH20
8.39e-59FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_d444292c781300fed6b168e7fc21bebbp6@GPM6B
8.39e-59FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_d444292c781300fed6b168e7fc21bebbp6@GPM6B
9.87e-59FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_0734d0b132b4340ceb4c6501f41d9085p1@ANKFN1
9.87e-59FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_0734d0b132b4340ceb4c6501f41d9085p1@ANKFN1
2.74e-58FFCP PHASE1:Hg19::chr8:132053136..132053177,-#_a04db8f83d32bff63bfcf0800e5f5597p2@ADCY8
2.74e-58FFCP PHASE2:Hg19::chr8:132053136..132053177,-#_a04db8f83d32bff63bfcf0800e5f5597p2@ADCY8
3.3e-58FFCP PHASE1:Hg19::chr11:62474885..62474903,-#_1985e3e4d650a84c58c8ef40096a87e5p5@BSCL2
3.3e-58FFCP PHASE2:Hg19::chr11:62474885..62474903,-#_1985e3e4d650a84c58c8ef40096a87e5p5@BSCL2
3.49e-58FFCP PHASE1:Hg19::chr9:19789028..19789050,-#_e04d9c9796075c605c9abc7233b9951dp1@SLC24A2
3.49e-58FFCP PHASE2:Hg19::chr9:19789028..19789050,-#_e04d9c9796075c605c9abc7233b9951dp1@SLC24A2
1.03e-57FFCP PHASE2:Hg19::chr2:210526233..210526258,+#_5fd540fe6032c7fcaadc870af27acf05p9@MAP2
1.03e-57FFCP PHASE1:Hg19::chr2:210526233..210526258,+#_5fd540fe6032c7fcaadc870af27acf05p9@MAP2
2.3e-57FFCP PHASE1:Hg19::chr8:30496078..30496130,+#_b784018b4420c2197332e479e604688bp1@LOC100507341
2.3e-57FFCP PHASE2:Hg19::chr8:30496078..30496130,+#_b784018b4420c2197332e479e604688bp1@LOC100507341
2.58e-57FFCP PHASE1:Hg19::chr10:62149542..62149590,-#_a49fe7110ac9fab215bcb82009f7bbc6p1@ANK3
2.58e-57FFCP PHASE2:Hg19::chr10:62149542..62149590,-#_a49fe7110ac9fab215bcb82009f7bbc6p1@ANK3
2.86e-57FFCP PHASE2:Hg19::chr11:105481612..105481624,+#_463c52571d9858ff5208714265925c93p2@GRIA4
2.86e-57FFCP PHASE1:Hg19::chr11:105481612..105481624,+#_463c52571d9858ff5208714265925c93p2@GRIA4
3.09e-57FFCP PHASE1:Hg19::chr8:9953136..9953190,+#_e8e0dca20eeb48bd1c37aa2819ad5f9cp3@MSRA
3.09e-57FFCP PHASE2:Hg19::chr8:9953136..9953190,+#_e8e0dca20eeb48bd1c37aa2819ad5f9cp3@MSRA
7.06e-57FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_8c4d70f2fa3af1a17388afb41091c426p2@RFX4
7.06e-57FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_8c4d70f2fa3af1a17388afb41091c426p2@RFX4
9.33e-57FFCP PHASE2:Hg19::chr2:210526166..210526232,+#_31733ff11698f521afba84d68360af2cp5@MAP2
9.33e-57FFCP PHASE1:Hg19::chr2:210526166..210526232,+#_31733ff11698f521afba84d68360af2cp5@MAP2
9.72e-57FFCP PHASE2:Hg19::chr5:11904580..11904619,-#_49ef64823f65a5df839dab5077700e85p6@CTNND2
9.72e-57FFCP PHASE1:Hg19::chr5:11904580..11904619,-#_49ef64823f65a5df839dab5077700e85p6@CTNND2
1.1e-56FFCP PHASE2:Hg19::chr17:43972989..43973035,-#_7b499421de724250fcc6ccc0ff9c3b4ep1@LOC100128977
1.1e-56FFCP PHASE1:Hg19::chr17:43972989..43973035,-#_7b499421de724250fcc6ccc0ff9c3b4ep1@LOC100128977
1.39e-56FFCP PHASE2:Hg19::chr5:87437585..87437647,+#_b2df93e212d5c7bf0cd951eb6485e04cp@chr5:87437585..87437647, +
1.39e-56FFCP PHASE1:Hg19::chr5:87437585..87437647,+#_b2df93e212d5c7bf0cd951eb6485e04cp@chr5:87437585..87437647, +
1.39e-56FFCP PHASE2:Hg19::chr19:46932128..46932207,-#_b2df93e212d5c7bf0cd951eb6485e04cp@chr19:46932128..46932207, -
1.39e-56FFCP PHASE1:Hg19::chr19:46932128..46932207,-#_b2df93e212d5c7bf0cd951eb6485e04cp@chr19:46932128..46932207, -
1.4e-56FFCP PHASE2:Hg19::chr11:105481405..105481472,+#_59d0c583410649767a084600554ab151p1@GRIA4
1.4e-56FFCP PHASE1:Hg19::chr11:105481405..105481472,+#_59d0c583410649767a084600554ab151p1@GRIA4
1.65e-56FFCP PHASE2:Hg19::chr4:176733558..176733609,-#_1319e3f787eef45e806c8939c7def70fp7@GPM6A
1.65e-56FFCP PHASE1:Hg19::chr4:176733558..176733609,-#_1319e3f787eef45e806c8939c7def70fp7@GPM6A
2.03e-56FFCP PHASE2:Hg19::chr1:205012293..205012326,+#_4eea5ec8ac4472d3e80b7799b66d2d12p2@CNTN2
2.03e-56FFCP PHASE1:Hg19::chr1:205012293..205012326,+#_4eea5ec8ac4472d3e80b7799b66d2d12p2@CNTN2
5.74e-56FFCP PHASE2:Hg19::chr4:176733377..176733424,-#_081d0c03fb7b11720264a7aee33a7a96p1@GPM6A
5.74e-56FFCP PHASE1:Hg19::chr4:176733377..176733424,-#_081d0c03fb7b11720264a7aee33a7a96p1@GPM6A
7.08e-56FFCP PHASE2:Hg19::chr12:20848486..20848542,+#_232d5aa083364b351e45b02373b527c8p1@SLCO1C1
7.08e-56FFCP PHASE1:Hg19::chr12:20848486..20848542,+#_232d5aa083364b351e45b02373b527c8p1@SLCO1C1
7.16e-56FFCP PHASE2:Hg19::chr9:19789059..19789070,-#_3802fbe384a9cb8495d1bc02d84a7028p2@SLC24A2
7.16e-56FFCP PHASE1:Hg19::chr9:19789059..19789070,-#_3802fbe384a9cb8495d1bc02d84a7028p2@SLC24A2
7.49e-56FFCP PHASE1:Hg19::chr11:105480793..105480845,+#_c069a068c876328bc0d67e425c0c9b9ap3@GRIA4
7.49e-56FFCP PHASE2:Hg19::chr11:105480793..105480845,+#_c069a068c876328bc0d67e425c0c9b9ap3@GRIA4
1.31e-55FFCP PHASE1:Hg19::chr3:181417353..181417371,+#_0c07ee956a5f8d728c264efde1432cd7p1@SOX2-OT
1.31e-55FFCP PHASE2:Hg19::chr3:181417353..181417371,+#_0c07ee956a5f8d728c264efde1432cd7p1@SOX2-OT
1.32e-55FFCP PHASE2:Hg19::chr4:176733425..176733439,-#_97dd4d356f6ef436528f61f475425534p8@GPM6A
1.32e-55FFCP PHASE1:Hg19::chr4:176733425..176733439,-#_97dd4d356f6ef436528f61f475425534p8@GPM6A
1.35e-55FFCP PHASE1:Hg19::chr8:9953735..9953778,+#_95277c9f715a017426118207ca88707ep@chr8:9953735..9953778, +
1.35e-55FFCP PHASE2:Hg19::chr8:9953735..9953778,+#_95277c9f715a017426118207ca88707ep@chr8:9953735..9953778, +
1.39e-55FFCP PHASE1:Hg19::chr3:47933982..47934047,-#_cc4c82ed63f0fafcbc2c3d813a7b1328p3@MAP4
1.39e-55FFCP PHASE2:Hg19::chr3:47933982..47934047,-#_cc4c82ed63f0fafcbc2c3d813a7b1328p3@MAP4
1.59e-55FFCP PHASE2:Hg19::chr3:181417374..181417407,+#_b088dd3f5a517d0b6df4b4e8850fe504p2@SOX2-OT
1.59e-55FFCP PHASE1:Hg19::chr3:181417374..181417407,+#_b088dd3f5a517d0b6df4b4e8850fe504p2@SOX2-OT
1.87e-55FFCP PHASE2:Hg19::chr21:42219168..42219187,-#_8f2e7c15d5c9734f8c88b2290dd58f2fp2@DSCAM
1.87e-55FFCP PHASE1:Hg19::chr21:42219168..42219187,-#_8f2e7c15d5c9734f8c88b2290dd58f2fp2@DSCAM
2.95e-55FFCP PHASE2:Hg19::chr12:99288536..99288653,-#_d3e07414a773c3764c8b3e47810a94f4p1@ANKS1B
2.95e-55FFCP PHASE1:Hg19::chr12:99288536..99288653,-#_d3e07414a773c3764c8b3e47810a94f4p1@ANKS1B
4.14e-55FFCP PHASE1:Hg19::chr17:49124154..49124169,-#_b5cc13d28daa446206e4176e9612209ep6@SPAG9
4.14e-55FFCP PHASE2:Hg19::chr17:49124154..49124169,-#_b5cc13d28daa446206e4176e9612209ep6@SPAG9
7.57e-55FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_eec71f45942e687eb7ad392d47a70301p1@RFX4
7.57e-55FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_eec71f45942e687eb7ad392d47a70301p1@RFX4
7.83e-55FFCP PHASE1:Hg19::chr17:42984601..42984636,-#_62a130c19a3388310c14bfebdcb9ee4fp2@GFAP
7.83e-55FFCP PHASE2:Hg19::chr17:42984601..42984636,-#_62a130c19a3388310c14bfebdcb9ee4fp2@GFAP
8.99e-55FFCP PHASE1:Hg19::chr2:210444402..210444423,+#_7a55c084138f15d812e1167015855892p11@MAP2
8.99e-55FFCP PHASE2:Hg19::chr2:210444402..210444423,+#_7a55c084138f15d812e1167015855892p11@MAP2
9.16e-55FFCP PHASE1:Hg19::chrX:151619746..151619815,-#_9390041111cd7d0955c30a3700219222p1@GABRA3
9.16e-55FFCP PHASE2:Hg19::chrX:151619746..151619815,-#_9390041111cd7d0955c30a3700219222p1@GABRA3
1.03e-54FFCP PHASE1:Hg19::chr14:60097524..60097538,-#_95255bc6e46583e4661de583a5f530c3p3@RTN1
1.03e-54FFCP PHASE2:Hg19::chr14:60097524..60097538,-#_95255bc6e46583e4661de583a5f530c3p3@RTN1
1.14e-54FFCP PHASE1:Hg19::chr2:210444267..210444287,+#_2954891cf75601d494c304851433c041p7@MAP2
1.14e-54FFCP PHASE2:Hg19::chr2:210444267..210444287,+#_2954891cf75601d494c304851433c041p7@MAP2
1.16e-54FFCP PHASE2:Hg19::chr17:43972010..43972027,+#_7ec461f86792e9a77088e6298c221fd3p4@MAPT
1.16e-54FFCP PHASE1:Hg19::chr17:43972010..43972027,+#_7ec461f86792e9a77088e6298c221fd3p4@MAPT
1.28e-54FFCP PHASE2:Hg19::chr2:210444345..210444394,+#_7c7acb8d2775da465c46140d1210f80fp3@MAP2
1.28e-54FFCP PHASE1:Hg19::chr19:10563567..10563617,+#_7c7acb8d2775da465c46140d1210f80fp1@PDE4A
1.28e-54FFCP PHASE2:Hg19::chr19:10563567..10563617,+#_7c7acb8d2775da465c46140d1210f80fp1@PDE4A
1.28e-54FFCP PHASE1:Hg19::chr2:210444345..210444394,+#_7c7acb8d2775da465c46140d1210f80fp3@MAP2
2.04e-54FFCP PHASE2:Hg19::chrX:13835124..13835142,-#_5cb214f785e616a8c1ceecfa4147d548p5@GPM6B
2.04e-54FFCP PHASE1:Hg19::chrX:13835124..13835142,-#_5cb214f785e616a8c1ceecfa4147d548p5@GPM6B
2.23e-54FFCP PHASE2:Hg19::chr1:177134024..177134052,-#_d69fd7a2587a582981e6876458d57ab2p2@ASTN1
2.23e-54FFCP PHASE1:Hg19::chr1:177134024..177134052,-#_d69fd7a2587a582981e6876458d57ab2p2@ASTN1










Property "Property value" (as page type) with input value "UBPROP:0000001 "Primary germ layer that is the outer of the embryonic germ layers and gives rise to epidermis and neural tissue.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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