Personal tools

UBERON:0000115: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000115
|alt_id=
|name=lung epithelium
|namespace=
|def="the epithelial layer of the lung." [MP:0006382]
|xref=BTO:0001653;;MA:0001783
|is_a=UBERON:0004802
|synonym="epithelial tissue of lung" EXACT [OBOL:automatic];;"epithelium of lung" EXACT [OBOL:automatic];;"lung epithelial tissue" EXACT [OBOL:automatic];;"pulmonary epithelium" RELATED [BTO:0001653]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the epithelial layer of the lung." [MP:0006382]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0001041
|develops_from=UBERON:0001041
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000115
|is_a=UBERON:0004815
|is_obsolete=
|located_in=
|located_in=
|name=lung epithelium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002048
|part_of=UBERON:0002048
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="epithelial tissue of lung" EXACT [OBOL:automatic];;"epithelium of lung" EXACT [OBOL:automatic];;"lung epithelial tissue" EXACT [OBOL:automatic];;"pulmonary epithelium" RELATED [BTO:0001653]
|union_of=
|xref=BTO:0001653;;MA:0001783
}}
}}

Latest revision as of 17:06, 12 September 2014

Name:lung epithelium
Namespace:FANTOM
Definition:"the epithelial layer of the lung." [MP:0006382]
Xrefs:
links:

BTO:0001653

MA:0001783
Synonyms: "epithelial tissue of lung" EXACT [OBOL:automatic]
"epithelium of lung" EXACT [OBOL:automatic]
"lung epithelial tissue" EXACT [OBOL:automatic]
"pulmonary epithelium" RELATED [BTO:0001653]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004815(lower respiratory tract epithelium)
develops_from:UBERON:0001041(foregut)
part_of:UBERON:0002048(lung)



Children

is a:UBERON:0002169 (alveolar sac),UBERON:0004821 (pulmonary alveolus epithelium)
part of:CL:0000082 (epithelial cell of lung)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000115 (lung epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.46e-24FFCP PHASE1:Hg19::chr2:233352573..233352580,-#_c87ca1d9ba3f42a24aa27154a623e9ebp4@ECEL1
3.46e-24FFCP PHASE2:Hg19::chr2:233352573..233352580,-#_c87ca1d9ba3f42a24aa27154a623e9ebp4@ECEL1
5.37e-22FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_d2a2e3f04744b30241de83ce3c64951bp@chr6:45399263..45399274, +
5.37e-22FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_d2a2e3f04744b30241de83ce3c64951bp@chr6:45399263..45399274, +
5.37e-22FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_d2a2e3f04744b30241de83ce3c64951bp@chr6:45399294..45399301, +
5.37e-22FFCP PHASE1:Hg19::chr7:31938679..31938703,-#_d2a2e3f04744b30241de83ce3c64951bp@chr7:31938679..31938703, -
5.37e-22FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_d2a2e3f04744b30241de83ce3c64951bp@chr6:45399294..45399301, +
5.37e-22FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_d2a2e3f04744b30241de83ce3c64951bp@chr6:45405332..45405343, +
5.37e-22FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_d2a2e3f04744b30241de83ce3c64951bp@chr6:125378873..125378876, +
5.37e-22FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_d2a2e3f04744b30241de83ce3c64951bp@chr6:45405332..45405343, +
5.37e-22FFCP PHASE2:Hg19::chr7:31938679..31938703,-#_d2a2e3f04744b30241de83ce3c64951bp@chr7:31938679..31938703, -
5.37e-22FFCP PHASE2:Hg19::chr7:157944243..157944249,-#_d2a2e3f04744b30241de83ce3c64951bp@chr7:157944243..157944249, -
5.37e-22FFCP PHASE1:Hg19::chr7:157944243..157944249,-#_d2a2e3f04744b30241de83ce3c64951bp@chr7:157944243..157944249, -
5.37e-22FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_d2a2e3f04744b30241de83ce3c64951bp@chr6:125378873..125378876, +
5.37e-22FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_d2a2e3f04744b30241de83ce3c64951bp@chr6:45405393..45405412, +
5.37e-22FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_d2a2e3f04744b30241de83ce3c64951bp@chr6:45399245..45399258, +
5.37e-22FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_d2a2e3f04744b30241de83ce3c64951bp@chr6:45405393..45405412, +
5.37e-22FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_d2a2e3f04744b30241de83ce3c64951bp@chr6:45399245..45399258, +
5.37e-22FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_d2a2e3f04744b30241de83ce3c64951bp@chr6:45399533..45399540, +
5.37e-22FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_d2a2e3f04744b30241de83ce3c64951bp@chr6:45399533..45399540, +
1.58e-19FFCP PHASE2:Hg19::chr6:73785930..73785949,-#_49c6a9baeced9b05a56b2609d16a6641p@chr6:73785930..73785949, -
1.58e-19FFCP PHASE1:Hg19::chr6:73785930..73785949,-#_49c6a9baeced9b05a56b2609d16a6641p@chr6:73785930..73785949, -
1.68e-19FFCP PHASE1:Hg19::chr10:5057199..5057247,-#_2654c1cd73ec5b4a1d83b60598451be9p@chr10:5057199..5057247, -
1.68e-19FFCP PHASE2:Hg19::chr10:5057199..5057247,-#_2654c1cd73ec5b4a1d83b60598451be9p@chr10:5057199..5057247, -
6.08e-19FFCP PHASE1:Hg19::chr1:161085273..161085285,+#_748b9396e05ffdf124cf17f2af93cf1fp@chr1:161085273..161085285, +
6.08e-19FFCP PHASE2:Hg19::chr1:161085273..161085285,+#_748b9396e05ffdf124cf17f2af93cf1fp@chr1:161085273..161085285, +
5.04e-17FFCP PHASE2:Hg19::chr14:36990061..36990072,-#_db41d3fd804954dbad1f187fc3389eb3p11@NKX2-1
5.04e-17FFCP PHASE1:Hg19::chr14:36990061..36990072,-#_db41d3fd804954dbad1f187fc3389eb3p11@NKX2-1
1.43e-16FFCP PHASE1:Hg19::chr8:63077406..63077421,-#_17aeb6909d171b2d1aaf56aabe3e23cbp@chr8:63077406..63077421, -
1.43e-16FFCP PHASE2:Hg19::chr8:63077406..63077421,-#_17aeb6909d171b2d1aaf56aabe3e23cbp@chr8:63077406..63077421, -
1.75e-16FFCP PHASE2:Hg19::chr14:36989407..36989410,-#_69e95017a21842d57e544db81b50453fp15@NKX2-1
1.75e-16FFCP PHASE1:Hg19::chr14:36989407..36989410,-#_69e95017a21842d57e544db81b50453fp15@NKX2-1
2.52e-16FFCP PHASE1:Hg19::chr2:194367545..194367554,+#_0f265d5b5b1c1818eeae5095349d6a5dp@chr2:194367545..194367554, +
2.52e-16FFCP PHASE2:Hg19::chr2:194367545..194367554,+#_0f265d5b5b1c1818eeae5095349d6a5dp@chr2:194367545..194367554, +
1.19e-15FFCP PHASE2:Hg19::chr14:36989412..36989423,-#_a7f5866cc20e03f3fcdb82e85637b2e9p12@NKX2-1
1.19e-15FFCP PHASE1:Hg19::chr14:36989412..36989423,-#_a7f5866cc20e03f3fcdb82e85637b2e9p12@NKX2-1
4.02e-15FFCP PHASE2:Hg19::chr20:22565370..22565388,-#_95961498fdaeabab473b40be8fbd81a5p2@FOXA2
4.02e-15FFCP PHASE1:Hg19::chr20:22565370..22565388,-#_95961498fdaeabab473b40be8fbd81a5p2@FOXA2
4.91e-15FFCP PHASE1:Hg19::chr11:69518332..69518343,-#_fb4b14fcd92f09b7859b93d537d43fe4p@chr11:69518332..69518343, -
4.91e-15FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_fb4b14fcd92f09b7859b93d537d43fe4p@chr13:70823810..70823813, +
4.91e-15FFCP PHASE2:Hg19::chr7:1968190..1968198,-#_fb4b14fcd92f09b7859b93d537d43fe4p@chr7:1968190..1968198, -
4.91e-15FFCP PHASE1:Hg19::chr7:1968190..1968198,-#_fb4b14fcd92f09b7859b93d537d43fe4p@chr7:1968190..1968198, -
4.91e-15FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_fb4b14fcd92f09b7859b93d537d43fe4p@chr8:40525350..40525354, -
4.91e-15FFCP PHASE2:Hg19::chr12:57638896..57638928,-#_fb4b14fcd92f09b7859b93d537d43fe4p@chr12:57638896..57638928, -
4.91e-15FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_fb4b14fcd92f09b7859b93d537d43fe4p@chr6:45399724..45399733, +
4.91e-15FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_fb4b14fcd92f09b7859b93d537d43fe4p@chr6:45399724..45399733, +
4.91e-15FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_fb4b14fcd92f09b7859b93d537d43fe4p@chr8:40525350..40525354, -
4.91e-15FFCP PHASE2:Hg19::chr7:1968200..1968208,-#_fb4b14fcd92f09b7859b93d537d43fe4p@chr7:1968200..1968208, -
4.91e-15FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_fb4b14fcd92f09b7859b93d537d43fe4p@chr5:92526866..92526914, -
4.91e-15FFCP PHASE1:Hg19::chr7:1968200..1968208,-#_fb4b14fcd92f09b7859b93d537d43fe4p@chr7:1968200..1968208, -
4.91e-15FFCP PHASE2:Hg19::chr11:69518108..69518118,-#_fb4b14fcd92f09b7859b93d537d43fe4p@chr11:69518108..69518118, -
4.91e-15FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_fb4b14fcd92f09b7859b93d537d43fe4p@chr6:73786593..73786601, +
4.91e-15FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_fb4b14fcd92f09b7859b93d537d43fe4p@chr5:92526866..92526914, -
4.91e-15FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_fb4b14fcd92f09b7859b93d537d43fe4p@chr6:73786593..73786601, +
4.91e-15FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_fb4b14fcd92f09b7859b93d537d43fe4p@chr13:70823810..70823813, +
4.91e-15FFCP PHASE2:Hg19::chr11:69518332..69518343,-#_fb4b14fcd92f09b7859b93d537d43fe4p@chr11:69518332..69518343, -
4.91e-15FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_fb4b14fcd92f09b7859b93d537d43fe4p@chr6:45399422..45399430, +
4.91e-15FFCP PHASE1:Hg19::chr12:57638896..57638928,-#_fb4b14fcd92f09b7859b93d537d43fe4p@chr12:57638896..57638928, -
4.91e-15FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_fb4b14fcd92f09b7859b93d537d43fe4p@chr6:45399422..45399430, +
4.91e-15FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_fb4b14fcd92f09b7859b93d537d43fe4p@chr6:73786620..73786627, +
4.91e-15FFCP PHASE1:Hg19::chr4:3344434..3344441,+#_fb4b14fcd92f09b7859b93d537d43fe4p@chr4:3344434..3344441, +
4.91e-15FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_fb4b14fcd92f09b7859b93d537d43fe4p@chr6:73786620..73786627, +
4.91e-15FFCP PHASE1:Hg19::chr11:69518108..69518118,-#_fb4b14fcd92f09b7859b93d537d43fe4p@chr11:69518108..69518118, -
4.91e-15FFCP PHASE2:Hg19::chr4:3344434..3344441,+#_fb4b14fcd92f09b7859b93d537d43fe4p@chr4:3344434..3344441, +
5.27e-15FFCP PHASE1:Hg19::chr12:53686428..53686432,+#_f1a56575a61ddd3aa601e0c0150cdc57p@chr12:53686428..53686432, +
5.27e-15FFCP PHASE1:Hg19::chr4:3310694..3310716,-#_f1a56575a61ddd3aa601e0c0150cdc57p@chr4:3310694..3310716, -
5.27e-15FFCP PHASE2:Hg19::chr16:19396252..19396261,+#_f1a56575a61ddd3aa601e0c0150cdc57p@chr16:19396252..19396261, +
5.27e-15FFCP PHASE2:Hg19::chr4:3310694..3310716,-#_f1a56575a61ddd3aa601e0c0150cdc57p@chr4:3310694..3310716, -
5.27e-15FFCP PHASE1:Hg19::chr7:44574294..44574303,-#_f1a56575a61ddd3aa601e0c0150cdc57p@chr7:44574294..44574303, -
5.27e-15FFCP PHASE2:Hg19::chr7:44574294..44574303,-#_f1a56575a61ddd3aa601e0c0150cdc57p@chr7:44574294..44574303, -
5.27e-15FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_f1a56575a61ddd3aa601e0c0150cdc57p@chr18:10085554..10085562, +
5.27e-15FFCP PHASE1:Hg19::chr5:77683792..77683799,+#_f1a56575a61ddd3aa601e0c0150cdc57p@chr5:77683792..77683799, +
5.27e-15FFCP PHASE1:Hg19::chr16:19396252..19396261,+#_f1a56575a61ddd3aa601e0c0150cdc57p@chr16:19396252..19396261, +
5.27e-15FFCP PHASE2:Hg19::chr12:53686428..53686432,+#_f1a56575a61ddd3aa601e0c0150cdc57p@chr12:53686428..53686432, +
5.27e-15FFCP PHASE2:Hg19::chr5:77683792..77683799,+#_f1a56575a61ddd3aa601e0c0150cdc57p@chr5:77683792..77683799, +
5.27e-15FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_f1a56575a61ddd3aa601e0c0150cdc57p@chr18:10085554..10085562, +
5.27e-15FFCP PHASE1:Hg19::chr19:6828544..6828554,+#_f1a56575a61ddd3aa601e0c0150cdc57p@chr19:6828544..6828554, +
5.27e-15FFCP PHASE2:Hg19::chr19:6828544..6828554,+#_f1a56575a61ddd3aa601e0c0150cdc57p@chr19:6828544..6828554, +
5.66e-15FFCP PHASE2:Hg19::chr18:71843159..71843180,+#_198228e478cd448d97dc32b99034b3dep@chr18:71843159..71843180, +
5.66e-15FFCP PHASE1:Hg19::chr18:72611750..72611755,+#_198228e478cd448d97dc32b99034b3dep@chr18:72611750..72611755, +
5.66e-15FFCP PHASE1:Hg19::chr6:18208425..18208436,+#_198228e478cd448d97dc32b99034b3dep@chr6:18208425..18208436, +
5.66e-15FFCP PHASE2:Hg19::chr18:72611750..72611755,+#_198228e478cd448d97dc32b99034b3dep@chr18:72611750..72611755, +
5.66e-15FFCP PHASE2:Hg19::chr6:18208425..18208436,+#_198228e478cd448d97dc32b99034b3dep@chr6:18208425..18208436, +
5.66e-15FFCP PHASE1:Hg19::chr2:233352641..233352675,+#_198228e478cd448d97dc32b99034b3dep@chr2:233352641..233352675, +
5.66e-15FFCP PHASE2:Hg19::chr2:233352641..233352675,+#_198228e478cd448d97dc32b99034b3dep@chr2:233352641..233352675, +
5.66e-15FFCP PHASE1:Hg19::chr18:71843121..71843138,+#_198228e478cd448d97dc32b99034b3dep@chr18:71843121..71843138, +
5.66e-15FFCP PHASE1:Hg19::chr1:156779602..156779619,-#_198228e478cd448d97dc32b99034b3dep@chr1:156779602..156779619, -
5.66e-15FFCP PHASE2:Hg19::chr1:156779602..156779619,-#_198228e478cd448d97dc32b99034b3dep@chr1:156779602..156779619, -
5.66e-15FFCP PHASE2:Hg19::chr18:71843121..71843138,+#_198228e478cd448d97dc32b99034b3dep@chr18:71843121..71843138, +
5.66e-15FFCP PHASE1:Hg19::chr18:71843159..71843180,+#_198228e478cd448d97dc32b99034b3dep@chr18:71843159..71843180, +
5.96e-15FFCP PHASE1:Hg19::chr14:36982724..36982767,-#_429fe73e3417038357b56a9e7b40c461p1@SFTA3
5.96e-15FFCP PHASE2:Hg19::chr14:36982724..36982767,-#_429fe73e3417038357b56a9e7b40c461p1@SFTA3
2.37e-14FFCP PHASE2:Hg19::chr11:123325116..123325128,+#_7453e114c76d47aca3444bd23e985964p4@ENST00000525757, p4@uc001pyv.1
2.37e-14FFCP PHASE1:Hg19::chr11:123325116..123325128,+#_7453e114c76d47aca3444bd23e985964p4@ENST00000525757, p4@uc001pyv.1
2.81e-14FFCP PHASE1:Hg19::chrY:59027988..59028000,+#_d3168dce6ea4c7c843d828853afc9552p@chrY:59027988..59028000, +
2.81e-14FFCP PHASE2:Hg19::chrY:59027988..59028000,+#_d3168dce6ea4c7c843d828853afc9552p@chrY:59027988..59028000, +
3.31e-14FFCP PHASE2:Hg19::chr11:17555398..17555410,-#_6d85a211c9934dc3788df37e26a36efcp9@USH1C
3.31e-14FFCP PHASE1:Hg19::chr14:36982935..36982943,-#_6d85a211c9934dc3788df37e26a36efcp9@SFTA3
3.31e-14FFCP PHASE1:Hg19::chr11:17555398..17555410,-#_6d85a211c9934dc3788df37e26a36efcp9@USH1C
3.31e-14FFCP PHASE2:Hg19::chr14:36982935..36982943,-#_6d85a211c9934dc3788df37e26a36efcp9@SFTA3

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000115&oldid=3277068"