CL:0002563: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by=tmeehan | |created_by=tmeehan | ||
| | |def="An epithelial cell of the intestine." [GOC:tfm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0002563 | |||
|is_a=CL:0002251 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=intestinal epithelial cell | |||
|namespace=FANTOM | |||
|obo_creation_date=2011-03-01T05:18:31Z | |||
|part_of=UBERON:0000160;;UBERON:0001277 | |part_of=UBERON:0000160;;UBERON:0001277 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
|subset= | |||
|synonym= | |||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 16:44, 12 September 2014
| Name: | intestinal epithelial cell |
|---|---|
| Namespace: | FANTOM |
| Definition: | "An epithelial cell of the intestine." [GOC:tfm] |
| Created by: | tmeehan |
| Creation date: | 2011-03-01T05:18:31Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002251(epithelial cell of alimentary canal) |
|---|---|
| part_of: | UBERON:0000160(intestine),UBERON:0001277(intestinal epithelium) |
Children
| is a: | CL:0000510 (paneth cell),CL:0000584 (enterocyte),CL:0002250 (intestinal crypt stem cell),CL:0002253 (epithelial cell of large intestine),CL:0002254 (epithelial cell of small intestine),FF:10812-111B2 (normal intestinal epithelial cell line:FHs 74 Int) |
|---|---|
| derives from: | FF:0000080 (human intestinal epithelial cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10523-107F1
- 10557-107I8
- 10635-108I5
- 10653-109B5
- 10812-111B2 (normal intestinal epithelial cell line:FHs 74 Int)
- 11246-116E4 (Intestinal epithelial cells (polarized), donor1)
- 11848-124I3 (CD326+ enterocyte, pool1)
... further results Mouse (Mus musculus)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10523-107F1
- 10557-107I8
- 10635-108I5
- 10653-109B5
- 10812-111B2 (normal intestinal epithelial cell line:FHs 74 Int)
- 11246-116E4 (Intestinal epithelial cells (polarized), donor1)
- 11848-124I3 (CD326+ enterocyte, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002563 (intestinal epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:35801527..35801540,+#_c35a4a1d679d06f5c12f69d85cb10c04 | p@chr9:35801527..35801540, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:35801527..35801540,+#_c35a4a1d679d06f5c12f69d85cb10c04 | p@chr9:35801527..35801540, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_d57631713a92003e5a6389d16c123e5a | p@chr8:122335239..122335244, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_d57631713a92003e5a6389d16c123e5a | p@chr8:122335239..122335244, + |
| 1.86e-71 | FFCP PHASE2:Mm9::chr17:57201412..57201418,-#_59b7d83028f9c815e901000a187c277f | p@chr17:57201412..57201418, - |
| 1.86e-71 | FFCP PHASE1:Mm9::chr17:57201412..57201418,-#_59b7d83028f9c815e901000a187c277f | p@chr17:57201412..57201418, - |
| 1.41e-68 | FFCP PHASE1:Mm9::chr4:155434167..155434177,+#_66379793841825f8f723bf87bbb74b69 | p@chr4:155434167..155434177, + |
| 1.41e-68 | FFCP PHASE2:Mm9::chr4:155434167..155434177,+#_66379793841825f8f723bf87bbb74b69 | p@chr4:155434167..155434177, + |
| 1.7e-67 | FFCP PHASE1:Mm9::chr8:64192378..64192389,+#_903fc1a77cfcda86161f05096b032e4b | p@chr8:64192378..64192389, + |
| 1.7e-67 | FFCP PHASE2:Mm9::chr8:64192378..64192389,+#_903fc1a77cfcda86161f05096b032e4b | p@chr8:64192378..64192389, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr1:111023361..111023366,+#_ef9e60aa605308fb2b70b85a9d17f6f9 | p1@CYMP |
| 2.4e-66 | FFCP PHASE2:Hg19::chr13:46093155..46093164,+#_ef9e60aa605308fb2b70b85a9d17f6f9 | p@chr13:46093155..46093164, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr9:129830560..129830568,+#_ef9e60aa605308fb2b70b85a9d17f6f9 | p@chr9:129830560..129830568, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr18:7034928..7034943,-#_ef9e60aa605308fb2b70b85a9d17f6f9 | p@chr18:7034928..7034943, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr7:117329764..117329777,+#_ef9e60aa605308fb2b70b85a9d17f6f9 | p1@ENST00000429014 |
| 2.4e-66 | FFCP PHASE2:Hg19::chr6:22919616..22919625,-#_ef9e60aa605308fb2b70b85a9d17f6f9 | p@chr6:22919616..22919625, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr13:46093155..46093164,+#_ef9e60aa605308fb2b70b85a9d17f6f9 | p@chr13:46093155..46093164, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr6:22919616..22919625,-#_ef9e60aa605308fb2b70b85a9d17f6f9 | p@chr6:22919616..22919625, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr9:129830560..129830568,+#_ef9e60aa605308fb2b70b85a9d17f6f9 | p@chr9:129830560..129830568, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr2:127873614..127873626,+#_ef9e60aa605308fb2b70b85a9d17f6f9 | p@chr2:127873614..127873626, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr7:117329764..117329777,+#_ef9e60aa605308fb2b70b85a9d17f6f9 | p1@ENST00000429014 |
| 2.4e-66 | FFCP PHASE2:Hg19::chr1:111023361..111023366,+#_ef9e60aa605308fb2b70b85a9d17f6f9 | p1@CYMP |
| 2.4e-66 | FFCP PHASE2:Hg19::chr18:7034928..7034943,-#_ef9e60aa605308fb2b70b85a9d17f6f9 | p@chr18:7034928..7034943, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr2:127873614..127873626,+#_ef9e60aa605308fb2b70b85a9d17f6f9 | p@chr2:127873614..127873626, + |
| 3.35e-66 | FFCP PHASE2:Hg19::chr1:6420713..6420725,-#_5767680774b505ef73ead78f95e8cb26 | p16@ACOT7 |
| 3.35e-66 | FFCP PHASE1:Hg19::chr2:205409703..205409714,+#_5767680774b505ef73ead78f95e8cb26 | p@chr2:205409703..205409714, + |
| 3.35e-66 | FFCP PHASE1:Hg19::chr1:6420713..6420725,-#_5767680774b505ef73ead78f95e8cb26 | p16@ACOT7 |
| 3.35e-66 | FFCP PHASE1:Hg19::chrX:21849506..21849512,-#_5767680774b505ef73ead78f95e8cb26 | p@chrX:21849506..21849512, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chr20:17691468..17691474,-#_5767680774b505ef73ead78f95e8cb26 | p@chr20:17691468..17691474, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chrX:21849506..21849512,-#_5767680774b505ef73ead78f95e8cb26 | p@chrX:21849506..21849512, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr20:17691468..17691474,-#_5767680774b505ef73ead78f95e8cb26 | p@chr20:17691468..17691474, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chr2:205409703..205409714,+#_5767680774b505ef73ead78f95e8cb26 | p@chr2:205409703..205409714, + |
| 4.67e-66 | FFCP PHASE2:Hg19::chr11:89925073..89925074,+#_34be8e77302a9cfe3351a13f89fb6568 | p@chr11:89925073..89925074, + |
| 4.67e-66 | FFCP PHASE2:Hg19::chr9:138591077..138591111,-#_34be8e77302a9cfe3351a13f89fb6568 | p@chr9:138591077..138591111, - |
| 4.67e-66 | FFCP PHASE2:Hg19::chr2:28340361..28340371,+#_34be8e77302a9cfe3351a13f89fb6568 | p@chr2:28340361..28340371, + |
| 4.67e-66 | FFCP PHASE1:Hg19::chr2:28340361..28340371,+#_34be8e77302a9cfe3351a13f89fb6568 | p@chr2:28340361..28340371, + |
| 4.67e-66 | FFCP PHASE1:Hg19::chr9:138591077..138591111,-#_34be8e77302a9cfe3351a13f89fb6568 | p@chr9:138591077..138591111, - |
| 4.67e-66 | FFCP PHASE1:Hg19::chr11:89925073..89925074,+#_34be8e77302a9cfe3351a13f89fb6568 | p@chr11:89925073..89925074, + |
| 3.55e-65 | FFCP PHASE2:Mm9::chr3:122215917..122215967,-#_43031b48511fef8b81b32f456a92053a | p@chr3:122215917..122215967, - |
| 3.55e-65 | FFCP PHASE1:Mm9::chr3:122215917..122215967,-#_43031b48511fef8b81b32f456a92053a | p@chr3:122215917..122215967, - |
| 7.03e-65 | FFCP PHASE1:Mm9::chr2:143738263..143738267,+#_df90084f72cbd9d7e133a801de0db761 | p@chr2:143738263..143738267, + |
| 7.03e-65 | FFCP PHASE2:Mm9::chr2:143738263..143738267,+#_df90084f72cbd9d7e133a801de0db761 | p@chr2:143738263..143738267, + |
| 2.43e-61 | FFCP PHASE2:Mm9::chr5:135465906..135465912,+#_e3397b2b7c7422c22cfdca408fe31b0c | p@chr5:135465906..135465912, + |
| 2.43e-61 | FFCP PHASE1:Mm9::chr5:135465906..135465912,+#_e3397b2b7c7422c22cfdca408fe31b0c | p@chr5:135465906..135465912, + |
| 5.84e-61 | FFCP PHASE1:Mm9::chr7:4101973..4101978,-#_b1922694029fc345db5aea588adfed4b | p4@Leng9 |
| 5.84e-61 | FFCP PHASE2:Mm9::chr7:4101973..4101978,-#_b1922694029fc345db5aea588adfed4b | p4@Leng9 |
| 1.29e-60 | FFCP PHASE1:Mm9::chr7:4101821..4101832,-#_48e4b2385c7109b6805e555a696a06e2 | p5@Leng9 |
| 1.29e-60 | FFCP PHASE2:Mm9::chr7:4101821..4101832,-#_48e4b2385c7109b6805e555a696a06e2 | p5@Leng9 |
| 5.24e-58 | FFCP PHASE2:Mm9::chr12:86771033..86771037,-#_aba62ed15d3669a8eba30dc4be302978 | p@chr12:86771033..86771037, - |
| 5.24e-58 | FFCP PHASE1:Mm9::chr12:86771033..86771037,-#_aba62ed15d3669a8eba30dc4be302978 | p@chr12:86771033..86771037, - |
| 6.35e-57 | FFCP PHASE2:Mm9::chr5:145119593..145119596,+#_25f7bdc0b7f2a73cf16eec6ec95d22a1 | p@chr5:145119593..145119596, + |
| 6.35e-57 | FFCP PHASE1:Mm9::chr5:145119593..145119596,+#_25f7bdc0b7f2a73cf16eec6ec95d22a1 | p@chr5:145119593..145119596, + |
| 8.86e-57 | FFCP PHASE2:Mm9::chr13:49066571..49066574,-#_38c9fbc95c8d508ff95f0547129a8065 | p@chr13:49066571..49066574, - |
| 8.86e-57 | FFCP PHASE1:Mm9::chr13:49066571..49066574,-#_38c9fbc95c8d508ff95f0547129a8065 | p@chr13:49066571..49066574, - |
| 1.46e-56 | FFCP PHASE1:Mm9::chr11:96797681..96797709,-#_1dabb16b761ef9a71455f8b9fcdefe1e | p@chr11:96797681..96797709, - |
| 1.46e-56 | FFCP PHASE2:Mm9::chr11:96797681..96797709,-#_1dabb16b761ef9a71455f8b9fcdefe1e | p@chr11:96797681..96797709, - |
| 2.19e-56 | FFCP PHASE2:Mm9::chr18:36576247..36576252,-#_198e3679efa7d9cbd628d4f99305cf1b | p@chr18:36576247..36576252, - |
| 2.19e-56 | FFCP PHASE1:Mm9::chr18:36576247..36576252,-#_198e3679efa7d9cbd628d4f99305cf1b | p@chr18:36576247..36576252, - |
| 5.47e-56 | FFCP PHASE1:Mm9::chr9:66888939..66888949,+#_159d2dd068730768f1bddad58f180c13 | p@chr9:66888939..66888949, + |
| 5.47e-56 | FFCP PHASE2:Mm9::chr9:66888939..66888949,+#_159d2dd068730768f1bddad58f180c13 | p@chr9:66888939..66888949, + |
| 6.45e-56 | FFCP PHASE1:Mm9::chr17:46693370..46693378,+#_94e47ed8ec969f286b101e06ecd0d547 | p@chr17:46693370..46693378, + |
| 6.45e-56 | FFCP PHASE2:Mm9::chr17:46693370..46693378,+#_94e47ed8ec969f286b101e06ecd0d547 | p@chr17:46693370..46693378, + |
| 1.93e-53 | FFCP PHASE2:Mm9::chr7:52317191..52317193,+#_4b6ef9fcd4297c790abf6accca71eb3c | p@chr7:52317191..52317193, + |
| 1.93e-53 | FFCP PHASE1:Mm9::chr7:52317191..52317193,+#_4b6ef9fcd4297c790abf6accca71eb3c | p@chr7:52317191..52317193, + |
| 2.55e-53 | FFCP PHASE2:Mm9::chr5:135442713..135442733,+#_e534c60445ad1366e4af67d8ea4ce245 | p@chr5:135442713..135442733, + |
| 2.55e-53 | FFCP PHASE1:Mm9::chr5:135442713..135442733,+#_e534c60445ad1366e4af67d8ea4ce245 | p@chr5:135442713..135442733, + |
| 5.3e-53 | FFCP PHASE1:Mm9::chr2:38781010..38781017,+#_f71cf93e6c05cac7a934bd4fe163bafc | p@chr2:38781010..38781017, + |
| 5.3e-53 | FFCP PHASE2:Mm9::chr2:38781010..38781017,+#_f71cf93e6c05cac7a934bd4fe163bafc | p@chr2:38781010..38781017, + |
| 3.46e-52 | FFCP PHASE2:Mm9::chr10:80565428..80565433,+#_a30cb2bf18fbdc561cc83e158b6d8a4b | p@chr10:80565428..80565433, + |
| 3.46e-52 | FFCP PHASE1:Mm9::chr10:80565428..80565433,+#_a30cb2bf18fbdc561cc83e158b6d8a4b | p@chr10:80565428..80565433, + |
| 7.4e-52 | FFCP PHASE2:Mm9::chr11:35759012..35759018,+#_23b4b7aa7601904c52c3bf544680c4de | p@chr11:35759012..35759018, + |
| 7.4e-52 | FFCP PHASE1:Mm9::chr11:35759012..35759018,+#_23b4b7aa7601904c52c3bf544680c4de | p@chr11:35759012..35759018, + |
| 1.0e-51 | FFCP PHASE1:Mm9::chr18:66636209..66636215,-#_d572d5bdb9ba96989db871d2004df55d | p@chr18:66636209..66636215, - |
| 1.0e-51 | FFCP PHASE2:Mm9::chr18:66636209..66636215,-#_d572d5bdb9ba96989db871d2004df55d | p@chr18:66636209..66636215, - |
| 1.17e-51 | FFCP PHASE2:Mm9::chr16:78268076..78268083,-#_d5d9517686d3b7fdd53823a313635c4b | p@chr16:78268076..78268083, - |
| 1.17e-51 | FFCP PHASE1:Mm9::chr16:78268076..78268083,-#_d5d9517686d3b7fdd53823a313635c4b | p@chr16:78268076..78268083, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:55404829..55404833,-#_7e6581131c419b311d0470589086ca73 | p@chr1:55404829..55404833, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:99661014..99661016,-#_7e6581131c419b311d0470589086ca73 | p@chr13:99661014..99661016, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:66794389..66794398,+#_7e6581131c419b311d0470589086ca73 | p@chr2:66794389..66794398, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:127681013..127681042,-#_7e6581131c419b311d0470589086ca73 | p@chr8:127681013..127681042, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:156822661..156822696,-#_7e6581131c419b311d0470589086ca73 | p@chr3:156822661..156822696, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:97958802..97958804,-#_7e6581131c419b311d0470589086ca73 | p@chr7:97958802..97958804, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:198324742..198324745,+#_7e6581131c419b311d0470589086ca73 | p@chr1:198324742..198324745, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:8389389..8389429,-#_7e6581131c419b311d0470589086ca73 | p@chr6:8389389..8389429, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:127817393..127817400,+#_7e6581131c419b311d0470589086ca73 | p@chr8:127817393..127817400, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:43616324..43616335,-#_7e6581131c419b311d0470589086ca73 | p@chr2:43616324..43616335, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:127445866..127445873,+#_7e6581131c419b311d0470589086ca73 | p@chr8:127445866..127445873, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:140054724..140054735,-#_7e6581131c419b311d0470589086ca73 | p@chr3:140054724..140054735, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr12:65466889..65466894,-#_7e6581131c419b311d0470589086ca73 | p@chr12:65466889..65466894, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr16:19661585..19661596,+#_7e6581131c419b311d0470589086ca73 | p@chr16:19661585..19661596, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr5:97747048..97747059,+#_7e6581131c419b311d0470589086ca73 | p@chr5:97747048..97747059, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:140054665..140054678,-#_7e6581131c419b311d0470589086ca73 | p@chr3:140054665..140054678, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr12:65466889..65466894,-#_7e6581131c419b311d0470589086ca73 | p@chr12:65466889..65466894, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128807259..128807281,+#_7e6581131c419b311d0470589086ca73 | p@chr8:128807259..128807281, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:169559850..169559856,-#_7e6581131c419b311d0470589086ca73 | p@chr4:169559850..169559856, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr16:53671764..53671771,-#_7e6581131c419b311d0470589086ca73 | p@chr16:53671764..53671771, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:19707156..19707203,+#_7e6581131c419b311d0470589086ca73 | p@chr2:19707156..19707203, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chrX:42162203..42162241,+#_7e6581131c419b311d0470589086ca73 | p@chrX:42162203..42162241, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:78621016..78621042,+#_7e6581131c419b311d0470589086ca73 | p@chr1:78621016..78621042, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:87049573..87049608,-#_7e6581131c419b311d0470589086ca73 | p@chr7:87049573..87049608, - |
