Personal tools

CL:0002321: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{CL |id=CL:0002321 |name=embryonic cell |namespace=cell |def="A cell of the embryo." [FMA:0618947256] |xref=FMA:82841 |is_a=CL:0000548 |synonym= |comment= |alt_id= ...")
 
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002321
|alt_id=
|name=embryonic cell
|namespace=cell
|def="A cell of the embryo." [FMA:0618947256]
|xref=FMA:82841
|is_a=CL:0000548
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-09-15T03:39:21Z
|def="A cell of the embryo." [FMA:0618947256]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002321
|is_a=CL:0000548
|is_obsolete=
|located_in=
|located_in=
|name=embryonic cell
|namespace=FANTOM
|obo_creation_date=2010-09-15T03:39:21Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym=
|union_of=
|xref=FMA:82840;;FMA:82841;;WBbt:0007028
}}
}}

Latest revision as of 16:42, 12 September 2014

Name:embryonic cell
Namespace:FANTOM
Definition:"A cell of the embryo." [FMA:0618947256]
Xrefs:
links:

FMA:82840
FMA:82841

WBbt:0007028
Created by:tmeehan
Creation date:2010-09-15T03:39:21Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000548(animal cell)



Children


is a:CL:0000221 (ectodermal cell),CL:0000222 (mesodermal cell),CL:0000223 (endodermal cell),CL:0000333 (migratory neural crest cell),CL:0002322 (embryonic stem cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002321 (embryonic cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.91e-44FFCP PHASE1:Mm9::chr2:87366179..87366201,+#_55134c3dd1e97023e743f53b102a51f5p1@ENSMUST00000167296
2.91e-44FFCP PHASE2:Mm9::chr2:87366179..87366201,+#_55134c3dd1e97023e743f53b102a51f5p1@ENSMUST00000167296
1.22e-41FFCP PHASE2:Mm9::chr7:111031610..111031645,-#_2b0763ab0a9caee6efb3c0910e2a59b5p1@ENSMUST00000120890
1.22e-41FFCP PHASE1:Mm9::chr7:111031610..111031645,-#_2b0763ab0a9caee6efb3c0910e2a59b5p1@ENSMUST00000120890
2.11e-41FFCP PHASE2:Mm9::chr6:7933424..7933445,-#_0902ce3b9f3eeb8a6011566ce0ae1448p1@ENSMUST00000057757
2.11e-41FFCP PHASE1:Mm9::chr6:7933424..7933445,-#_0902ce3b9f3eeb8a6011566ce0ae1448p1@ENSMUST00000057757
1.12e-39FFCP PHASE2:Mm9::chr15:68141338..68141346,+#_237f614a574fb25f1966a78cff3f6ee5p2@Gm10045, p2@Gm10095, p2@Gm10163, p2@Gm10240, p2@Gm11703, p2@Gm13370, p2@Gm13653, p2@Gm15682, p2@Gm4478, p2@Gm5445, p2@Gm8101, p2@LOC100505283, p2@LOC634339, p2@Rpl21
1.12e-39FFCP PHASE1:Mm9::chr15:68141338..68141346,+#_237f614a574fb25f1966a78cff3f6ee5p2@Gm10045, p2@Gm10095, p2@Gm10163, p2@Gm10240, p2@Gm11703, p2@Gm13370, p2@Gm13653, p2@Gm15682, p2@Gm4478, p2@Gm5445, p2@Gm8101, p2@LOC100505283, p2@LOC634339, p2@Rpl21
1.14e-39FFCP PHASE1:Mm9::chr13:99383382..99383414,+#_f1a0e8bd35dc0441cc5282f1d0b44ae0p@chr13:99383382..99383414, +
1.14e-39FFCP PHASE2:Mm9::chr13:99383382..99383414,+#_f1a0e8bd35dc0441cc5282f1d0b44ae0p@chr13:99383382..99383414, +
2.05e-39FFCP PHASE1:Mm9::chr2:30663055..30663094,-#_c6cdaf2364e363cde77983cfc3d1b088p@chr2:30663055..30663094, -
2.05e-39FFCP PHASE2:Mm9::chr2:30663055..30663094,-#_c6cdaf2364e363cde77983cfc3d1b088p@chr2:30663055..30663094, -
3.15e-39FFCP PHASE2:Mm9::chr12:52941704..52941726,-#_6c57886ee71cece4d780ce7eff5a0b03p@chr12:52941704..52941726, -
3.15e-39FFCP PHASE1:Mm9::chr12:52941704..52941726,-#_6c57886ee71cece4d780ce7eff5a0b03p@chr12:52941704..52941726, -
3.16e-39FFCP PHASE1:Hg19::chr5:176074455..176074519,+#_fb8ffa5b0c2dd8e4eb3871d13d4f8490p1@TSPAN17
3.16e-39FFCP PHASE2:Hg19::chr5:176074455..176074519,+#_fb8ffa5b0c2dd8e4eb3871d13d4f8490p1@TSPAN17
1.54e-38FFCP PHASE1:Mm9::chr7:109167666..109167667,+#_80f5bec8d4eb2ff9495d0acda27cf4b0p@chr7:109167666..109167667, +
1.54e-38FFCP PHASE2:Mm9::chr7:109167666..109167667,+#_80f5bec8d4eb2ff9495d0acda27cf4b0p@chr7:109167666..109167667, +
3.19e-38FFCP PHASE1:Hg19::chr1:154943181..154943192,-#_c36cfa55db9d9672d8ed5044a3eb5efcp4@SHC1
3.19e-38FFCP PHASE2:Hg19::chr1:154943181..154943192,-#_c36cfa55db9d9672d8ed5044a3eb5efcp4@SHC1
4.96e-38FFCP PHASE1:Hg19::chr1:16085263..16085314,+#_f52ee3a885d5e3e3f3b23ac3be4de349p1@FBLIM1
4.96e-38FFCP PHASE2:Hg19::chr1:16085263..16085314,+#_f52ee3a885d5e3e3f3b23ac3be4de349p1@FBLIM1
1.09e-37FFCP PHASE1:Hg19::chr17:49243792..49243828,+#_0810f9d382557f02b4feb3728de3a3bdp2@NME1-NME2, p2@NME2
1.09e-37FFCP PHASE2:Hg19::chr17:49243792..49243828,+#_0810f9d382557f02b4feb3728de3a3bdp2@NME1-NME2, p2@NME2
1.33e-37FFCP PHASE2:Hg19::chr16:69166031..69166070,-#_5268717e6364d9f759cd3315ab025685p2@CHTF8
1.33e-37FFCP PHASE1:Hg19::chr16:69166031..69166070,-#_5268717e6364d9f759cd3315ab025685p2@CHTF8
1.48e-37FFCP PHASE2:Hg19::chr1:154943232..154943245,-#_283db4531646d64da6cc586dba8452f1p5@SHC1
1.48e-37FFCP PHASE1:Hg19::chr1:154943232..154943245,-#_283db4531646d64da6cc586dba8452f1p5@SHC1
1.83e-37FFCP PHASE2:Hg19::chr11:66247887..66247916,+#_4b50c62c830da4aa8c64fd1850b6b7bdp1@DPP3
1.83e-37FFCP PHASE1:Hg19::chr11:66247887..66247916,+#_4b50c62c830da4aa8c64fd1850b6b7bdp1@DPP3
1.94e-37FFCP PHASE1:Hg19::chr16:67880820..67880844,+#_fa294a842eb12155ea8d675fbc76b3f1p1@NUTF2
1.94e-37FFCP PHASE2:Hg19::chr16:67880820..67880844,+#_fa294a842eb12155ea8d675fbc76b3f1p1@NUTF2
5.31e-37FFCP PHASE1:Mm9::chr12:55340225..55340232,+#_92d072642b600e8be5ba313e5da1b6b4p1@ENSMUST00000082671
5.31e-37FFCP PHASE2:Mm9::chr12:55340225..55340232,+#_92d072642b600e8be5ba313e5da1b6b4p1@ENSMUST00000082671
6.13e-37FFCP PHASE2:Mm9::chr1:43245945..43245960,+#_de8e860ab253ba54157eb3fd7c5ae182p1@uc007avm.2
6.13e-37FFCP PHASE1:Mm9::chr1:43245945..43245960,+#_de8e860ab253ba54157eb3fd7c5ae182p1@uc007avm.2
6.24e-37FFCP PHASE1:Hg19::chr7:100425130..100425153,-#_716464f8fcb398760f1058b3f5eb77bep1@EPHB4
6.24e-37FFCP PHASE2:Hg19::chr7:100425130..100425153,-#_716464f8fcb398760f1058b3f5eb77bep1@EPHB4
7.72e-37FFCP PHASE2:Hg19::chr4:15683079..15683115,-#_5b890823d19094a833077e2d83157b8ap3@FBXL5
7.72e-37FFCP PHASE1:Hg19::chr4:15683079..15683115,-#_5b890823d19094a833077e2d83157b8ap3@FBXL5
1.04e-36FFCP PHASE1:Hg19::chr11:35639899..35639959,+#_8de3242b4e5d2c1605c4e34872ecd30fp2@FJX1
1.04e-36FFCP PHASE2:Hg19::chr11:35639899..35639959,+#_8de3242b4e5d2c1605c4e34872ecd30fp2@FJX1
1.36e-36FFCP PHASE2:Hg19::chr1:154943212..154943230,-#_ed1546e6cc56e86225038bb711d67f3ep1@SHC1
1.36e-36FFCP PHASE1:Hg19::chr1:154943212..154943230,-#_ed1546e6cc56e86225038bb711d67f3ep1@SHC1
1.88e-36FFCP PHASE2:Hg19::chr17:41150479..41150500,+#_678e1c9ae98a9bd97c05e602e47e84c8p2@RPL27
1.88e-36FFCP PHASE1:Hg19::chr17:41150479..41150500,+#_678e1c9ae98a9bd97c05e602e47e84c8p2@RPL27
2.09e-36FFCP PHASE2:Hg19::chr5:179233835..179233873,-#_de007015d9418da4dd62f73ca1d40f7dp1@MGAT4B
2.09e-36FFCP PHASE1:Hg19::chr5:179233835..179233873,-#_de007015d9418da4dd62f73ca1d40f7dp1@MGAT4B
2.56e-36FFCP PHASE2:Mm9::chr6:146526110..146526114,-#_54d06ed85a21f60cfabc47af1a302da9p6@4933424B01Rik
2.56e-36FFCP PHASE1:Mm9::chr6:146526110..146526114,-#_54d06ed85a21f60cfabc47af1a302da9p6@4933424B01Rik
3.45e-36FFCP PHASE1:Mm9::chr6:37755972..37755979,+#_8bb55165be27b2bfbfaffe268018df92p1@uc009bjh.1
3.45e-36FFCP PHASE2:Mm9::chr6:37755972..37755979,+#_8bb55165be27b2bfbfaffe268018df92p1@uc009bjh.1
5.93e-36FFCP PHASE1:Hg19::chr17:41174343..41174356,-#_e0a8ab78685a975038314c93c1060a47p3@VAT1
5.93e-36FFCP PHASE2:Hg19::chr17:41174343..41174356,-#_e0a8ab78685a975038314c93c1060a47p3@VAT1
8.44e-36FFCP PHASE1:Hg19::chr3:98620500..98620547,-#_ea50347f59f635f6b9db37dfc69407f9p1@DCBLD2
8.44e-36FFCP PHASE2:Hg19::chr3:98620500..98620547,-#_ea50347f59f635f6b9db37dfc69407f9p1@DCBLD2
1.07e-35FFCP PHASE1:Hg19::chr16:58035303..58035361,+#_857ea18c6ad8c2c1ad8895a35f429ae2p1@C16orf57
1.07e-35FFCP PHASE2:Hg19::chr16:58035303..58035361,+#_857ea18c6ad8c2c1ad8895a35f429ae2p1@C16orf57
2.05e-35FFCP PHASE1:Hg19::chr5:180670839..180670850,-#_f17f03d1cb86fade8ef1adaea79e7192p2@GNB2L1
2.05e-35FFCP PHASE2:Hg19::chr5:180670839..180670850,-#_f17f03d1cb86fade8ef1adaea79e7192p2@GNB2L1
2.07e-35FFCP PHASE1:Hg19::chr10:99258637..99258751,+#_85a377cb2a523b0822b16a091fa8b4bbp1@UBTD1
2.07e-35FFCP PHASE2:Hg19::chr10:99258637..99258751,+#_85a377cb2a523b0822b16a091fa8b4bbp1@UBTD1
2.57e-35FFCP PHASE1:Hg19::chr20:50721803..50721857,-#_0e0b94f910aa0c2d4d790329e49c227ep2@ZFP64
2.57e-35FFCP PHASE2:Hg19::chr20:50721803..50721857,-#_0e0b94f910aa0c2d4d790329e49c227ep2@ZFP64
2.78e-35FFCP PHASE1:Hg19::chr9:130565568..130565617,+#_8706ca4fb500fc81a064c8ea3232732fp2@FPGS
2.78e-35FFCP PHASE2:Hg19::chr9:130565568..130565617,+#_8706ca4fb500fc81a064c8ea3232732fp2@FPGS
3.38e-35FFCP PHASE2:Mm9::chr9:107659863..107659866,-#_dcea119255101d0dd3ff35f34e415780p@chr9:107659863..107659866, -
3.38e-35FFCP PHASE1:Mm9::chr9:107659863..107659866,-#_dcea119255101d0dd3ff35f34e415780p@chr9:107659863..107659866, -
4.37e-35FFCP PHASE1:Hg19::chr5:176900610..176900662,-#_834854af1d056f0869cf6fa5f8042294p1@DBN1
4.37e-35FFCP PHASE2:Hg19::chr5:176900610..176900662,-#_834854af1d056f0869cf6fa5f8042294p1@DBN1
5.82e-35FFCP PHASE1:Hg19::chr19:1438351..1438382,+#_bf816dac31c14dc8e72bcf7024f9e854p2@RPS15
5.82e-35FFCP PHASE2:Hg19::chr19:1438351..1438382,+#_bf816dac31c14dc8e72bcf7024f9e854p2@RPS15
5.92e-35FFCP PHASE2:Hg19::chr3:50358886..50358915,-#_2227fa74e4871839e101241ba09589dfp1@HYAL2
5.92e-35FFCP PHASE1:Hg19::chr3:50358886..50358915,-#_2227fa74e4871839e101241ba09589dfp1@HYAL2
6.03e-35FFCP PHASE2:Hg19::chr10:99205959..99205981,+#_be395062b6a14f8dcbc419fd65cd470fp2@ZDHHC16
6.03e-35FFCP PHASE1:Hg19::chr10:99205959..99205981,+#_be395062b6a14f8dcbc419fd65cd470fp2@ZDHHC16
6.95e-35FFCP PHASE2:Hg19::chr17:635682..635768,+#_a06068d2ab1e6ec7b739cb0835dff638p2@FAM57A
6.95e-35FFCP PHASE1:Hg19::chr17:635682..635768,+#_a06068d2ab1e6ec7b739cb0835dff638p2@FAM57A
1.55e-34FFCP PHASE2:Mm9::chr9:57389282..57389286,+#_67e1aae76eaabd82b18d84837961af54p@chr9:57389282..57389286, +
1.55e-34FFCP PHASE1:Mm9::chr9:57389282..57389286,+#_67e1aae76eaabd82b18d84837961af54p@chr9:57389282..57389286, +
2.15e-34FFCP PHASE1:Hg19::chr19:2427539..2427591,-#_95d6a5739e3c413beac4b67cb0c29823p1@TIMM13
2.15e-34FFCP PHASE2:Hg19::chr19:2427539..2427591,-#_95d6a5739e3c413beac4b67cb0c29823p1@TIMM13
2.33e-34FFCP PHASE1:Mm9::chr1:24619955..24619958,-#_01bbc467d69535fc3069f10b69eac405p1@ENSMUST00000088336
2.33e-34FFCP PHASE2:Mm9::chr1:24619955..24619958,-#_01bbc467d69535fc3069f10b69eac405p1@ENSMUST00000088336
2.8e-34FFCP PHASE2:Hg19::chr3:52029958..52029974,-#_9141dab8c2cde43e107b7bc02505a7f4p2@RPL29
2.8e-34FFCP PHASE1:Hg19::chr3:52029958..52029974,-#_9141dab8c2cde43e107b7bc02505a7f4p2@RPL29
7.1e-34FFCP PHASE1:Hg19::chr17:48133330..48133349,+#_d8104fac54b3c9243f64cb6ee1cba84fp2@ITGA3
7.1e-34FFCP PHASE2:Hg19::chr17:48133330..48133349,+#_d8104fac54b3c9243f64cb6ee1cba84fp2@ITGA3
7.97e-34FFCP PHASE1:Hg19::chr20:60718430..60718526,-#_5f400789679fd0afc8c593065f1d97d2p1@PSMA7
7.97e-34FFCP PHASE2:Hg19::chr20:60718430..60718526,-#_5f400789679fd0afc8c593065f1d97d2p1@PSMA7
1.03e-33FFCP PHASE1:Hg19::chr19:5690266..5690296,+#_b65f256d5ab0e17450fed41ce1b8454fp2@RPL36
1.03e-33FFCP PHASE2:Hg19::chr19:5690266..5690296,+#_b65f256d5ab0e17450fed41ce1b8454fp2@RPL36
1.04e-33FFCP PHASE1:Mm9::chr13:34720187..34720194,-#_2de44a2038a08899746d2500a021d56bp@chr13:34720187..34720194, -
1.04e-33FFCP PHASE2:Mm9::chr13:34720187..34720194,-#_2de44a2038a08899746d2500a021d56bp@chr13:34720187..34720194, -
1.19e-33FFCP PHASE2:Hg19::chr5:149829263..149829276,-#_1e6ecaa525a7430d2e65b5f32d90fcbep2@RPS14
1.19e-33FFCP PHASE1:Hg19::chr5:149829263..149829276,-#_1e6ecaa525a7430d2e65b5f32d90fcbep2@RPS14
1.25e-33FFCP PHASE1:Mm9::chr5:115940240..115940260,+#_b616492ee16778a1e7777b17d04efbe8p1@ENSMUST00000101833
1.25e-33FFCP PHASE2:Mm9::chr5:115940240..115940260,+#_b616492ee16778a1e7777b17d04efbe8p1@ENSMUST00000101833
1.59e-33FFCP PHASE1:Hg19::chr14:23504087..23504118,-#_d5f2b6dcfbf46d698c694f03ae4455bap1@PSMB5
1.59e-33FFCP PHASE2:Hg19::chr14:23504087..23504118,-#_d5f2b6dcfbf46d698c694f03ae4455bap1@PSMB5

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002321&oldid=3275449"