Personal tools

UBERON:0005866: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0005866
|alt_id=
|name=pre-cartilage condensation
|namespace=
|def="A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage." [http://dictionary.reference.com/browse/precartilage]
|xref=AEO:0000150;;EHDAA2:0003150
|is_a=UBERON:0005856
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage." [http://dictionary.reference.com/browse/precartilage]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005866
|is_a=UBERON:0005291 ;;UBERON:0005856
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=pre-cartilage condensation
|namespace=
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0004288
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=AEO:0000150;;EHDAA2:0003150
}}
}}

Revision as of 11:37, 12 September 2014

Name:pre-cartilage condensation
Definition:"A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage." [1]
Xrefs:
links:

AEO:0000150

EHDAA2:0003150

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005291(embryonic tissue),UBERON:0005856(developing mesenchymal condensation)
part_of:UBERON:0000922(embryo),UBERON:0004288(skeleton)



Children

is a:UBERON:0010349 (otic capsule pre-cartilage condensation),UBERON:0010882 (limb bone pre-cartilage condensation),UBERON:0010886 (hindlimb bone pre-cartilage condensation),UBERON:0011095 (vertebra pre-cartilage condensation)
develops from:UBERON:0005863 (cartilaginous condensation)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005866 (pre-cartilage condensation), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.25e-162FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_73900a9c2c5738e0344c84ed3dad2680p@chr3:174737010..174737023, +
1.25e-162FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_73900a9c2c5738e0344c84ed3dad2680p@chr3:174737010..174737023, +
3.92e-140FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_2b0de687050566a409ab35a62e72d1e0p4@PAX1
3.92e-140FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_2b0de687050566a409ab35a62e72d1e0p4@PAX1
4.22e-99FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_07368171f53d0508eec9b2cd7755b7efp@chr5:30104176..30104187, -
4.22e-99FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_07368171f53d0508eec9b2cd7755b7efp@chr5:30104176..30104187, -
1.06e-78FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_865fc49cd5c12390b96aac0b5e4ad5d9p4@NKX3-2
1.06e-78FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_865fc49cd5c12390b96aac0b5e4ad5d9p4@NKX3-2
2.52e-71FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_57497237141d6c99eb91f0efdda58072p@chr9:114135497..114135526, -
2.52e-71FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_57497237141d6c99eb91f0efdda58072p@chr9:114135497..114135526, -
7.4e-71FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_13431131ded31b46122dd2e2d0d82847p@chr2:241897125..241897142, -
7.4e-71FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_13431131ded31b46122dd2e2d0d82847p@chr2:241897125..241897142, -
6.33e-70FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_7cf779333dd9008ae9a9facc825a6ed6p@chr3:80727046..80727051, -
6.33e-70FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_7cf779333dd9008ae9a9facc825a6ed6p@chr3:80727046..80727051, -
4.8e-67FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_aa430c7c351f16f460becee5b0d3856ep15@SNED1
4.8e-67FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_aa430c7c351f16f460becee5b0d3856ep15@SNED1
1.24e-66FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_1f155b7d07e2bcbcdd628313e7016369p20@CAPZB
1.24e-66FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_1f155b7d07e2bcbcdd628313e7016369p20@CAPZB
1.26e-62FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_b44bc85d1d9445f5b66d308e3f0aa3a2p@chr1:19778678..19778689, -
1.26e-62FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_b44bc85d1d9445f5b66d308e3f0aa3a2p@chr1:19778678..19778689, -
1.1e-59FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_1ae6f5804130f960959ce3696c79259dp@chr2:241897189..241897221, -
1.1e-59FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_1ae6f5804130f960959ce3696c79259dp@chr2:241897189..241897221, -
1.55e-57FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_cf371935b8371b0a4c1edd81cc5ce812p1@uc010aki.1
1.55e-57FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_cf371935b8371b0a4c1edd81cc5ce812p1@uc010aki.1
4.09e-56FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_e52cbab001db57bd1032f479f0114f69p6@SIX4
4.09e-56FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_e52cbab001db57bd1032f479f0114f69p6@SIX4
3.74e-53FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_e998ba3141b246c3edfea51deeac5545p3@uc010aki.1
3.74e-53FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_e998ba3141b246c3edfea51deeac5545p3@uc010aki.1
1.15e-51FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_971216dac47a0e857b38950e06c33f75p3@PAX1
1.15e-51FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_971216dac47a0e857b38950e06c33f75p3@PAX1
2.3e-51FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_fba3f3db663daf9094f09c9de38d09fdp@chr10:81923378..81923389, -
2.3e-51FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_fba3f3db663daf9094f09c9de38d09fdp@chr10:81923378..81923389, -
3.24e-51FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_edcdfce066744d61ff8f1d234c309b0dp@chr2:12248310..12248334, -
3.24e-51FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_edcdfce066744d61ff8f1d234c309b0dp@chr2:12248310..12248334, -
8.0e-51FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_f3c81e32a7d2ce34762da6060d04c202p19@HDAC9
8.0e-51FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_f3c81e32a7d2ce34762da6060d04c202p19@HDAC9
5.06e-49FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_96854618ce51acd9a30b35a350686bbep@chr7:158224707..158224729, -
5.06e-49FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_96854618ce51acd9a30b35a350686bbep@chr7:158224707..158224729, -
5.24e-48FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_d8cc5e40c6f80488f9d6d096eed06845p@chr1:65888177..65888194, +
5.24e-48FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_d8cc5e40c6f80488f9d6d096eed06845p@chr1:65888177..65888194, +
2.98e-45FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_2fd7f2eca9842248b0e78fa03783791ep3@NKX3-2
2.98e-45FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_2fd7f2eca9842248b0e78fa03783791ep3@NKX3-2
2.92e-44FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_b3c85fea8825688195f3aba58da61a23p1@MGC27382
2.92e-44FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_b3c85fea8825688195f3aba58da61a23p1@MGC27382
5.38e-44FFCP PHASE1:Mm9::chr1:24217213..24217226,+#_021d67a6b0e73ace9cee5d2936ae9539p@chr1:24217213..24217226, +
5.38e-44FFCP PHASE2:Mm9::chr1:24217213..24217226,+#_021d67a6b0e73ace9cee5d2936ae9539p@chr1:24217213..24217226, +
1.71e-43FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_1b318f08ba92d4e3978311369d00ab6ap18@HDAC9
1.71e-43FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_1b318f08ba92d4e3978311369d00ab6ap18@HDAC9
1.48e-40FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_3d08e6b4520d5f10d6b70657a91620ccp@chr9:33028063..33028067, -
1.48e-40FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_3d08e6b4520d5f10d6b70657a91620ccp@chr13:24914614..24914622, -
1.48e-40FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_3d08e6b4520d5f10d6b70657a91620ccp@chr9:33028063..33028067, -
1.48e-40FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_3d08e6b4520d5f10d6b70657a91620ccp@chr13:24914614..24914622, -
1.64e-40FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_2ed4ae431a18e0bbe7e212b69b46ec0dp1@PAX1
1.64e-40FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_2ed4ae431a18e0bbe7e212b69b46ec0dp1@PAX1
1.81e-40FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_90952361378b3c2fb595b5201d29e1eep5@PTGFR
1.81e-40FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_90952361378b3c2fb595b5201d29e1eep5@PTGFR
2.13e-40FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_baf82e498c04e3e64750059112b729ebp@chr2:241897363..241897398, +
2.13e-40FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_baf82e498c04e3e64750059112b729ebp@chr2:241897363..241897398, +
3.04e-39FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_c24261532dba0be39b2d2c3c8168b601p2@PAX1
3.04e-39FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_c24261532dba0be39b2d2c3c8168b601p2@PAX1
7.19e-39FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_79ff2e47f7be9d97d3869fbf3cbe7082p@chr5:140887761..140887777, +
7.19e-39FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_79ff2e47f7be9d97d3869fbf3cbe7082p16@HDAC9
7.19e-39FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_79ff2e47f7be9d97d3869fbf3cbe7082p@chr5:140887761..140887777, +
7.19e-39FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_79ff2e47f7be9d97d3869fbf3cbe7082p16@HDAC9
1.24e-38FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_1dc783186b2bc1435555bfe327e98c15p4@NUP54
1.24e-38FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_1dc783186b2bc1435555bfe327e98c15p4@NUP54
2.08e-38FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_76b73905557e560484c61850baf3176fp@chr2:241938405..241938416, +
2.08e-38FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_76b73905557e560484c61850baf3176fp@chr2:241938405..241938416, +
3.34e-38FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_fdc98642e4b9ac72765cb6ac30a8244ep1@NKX3-2
3.34e-38FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_fdc98642e4b9ac72765cb6ac30a8244ep1@NKX3-2
3.68e-38FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_5fe1e5c72a1a53c230a166c9a1b54e45p10@SYNJ2
3.68e-38FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_5fe1e5c72a1a53c230a166c9a1b54e45p10@SYNJ2
5.39e-38FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_c7646940ee5c85c8b4fdc9443890d7eap@chr9:16138889..16138902, -
5.39e-38FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_c7646940ee5c85c8b4fdc9443890d7eap@chr9:16138889..16138902, -
8.66e-38FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_1a1e4e80a05b983c8f15c4ca35b56cc8p2@ENST00000518706
8.66e-38FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_1a1e4e80a05b983c8f15c4ca35b56cc8p2@ENST00000518706
2.96e-37FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_130c49aa5e33f908b2eed7c3ac09e8aep1@ENST00000436845
2.96e-37FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_130c49aa5e33f908b2eed7c3ac09e8aep1@ENST00000436845
6.92e-37FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_7d7931b33d82482412c8c9f07ed07c1ap12@CDK5RAP2
6.92e-37FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_7d7931b33d82482412c8c9f07ed07c1ap12@CDK5RAP2
3.28e-36FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_d1a0bd5987ca5bee00d9af29aff5fd2dp1@ENST00000413519
3.28e-36FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_d1a0bd5987ca5bee00d9af29aff5fd2dp1@ENST00000413519
9.62e-35FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_05ebd8e6e128b3b3e2a97041d3cade3dp4@PAX9
9.62e-35FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_05ebd8e6e128b3b3e2a97041d3cade3dp4@PAX9
1.8e-34FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_e9358b07626c117cc8fb7cd434aa614cp@chr7:100202784..100202796, -
1.8e-34FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_e9358b07626c117cc8fb7cd434aa614cp@chr7:100202784..100202796, -
3.69e-34FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_6ef36d8fcc878153b95ca5f3cd26f7f3p8@HOXC6
3.69e-34FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_6ef36d8fcc878153b95ca5f3cd26f7f3p8@HOXC6
5.52e-34FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_7a84ebcb434337cdbfd3f7fae06c9621p6@CCDC86
5.52e-34FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_7a84ebcb434337cdbfd3f7fae06c9621p6@CCDC86
1.43e-33FFCP PHASE2:Hg19::chr20:21695435..21695452,+#_318e8faa251514f603de4953b28fc6e5p@chr20:21695435..21695452, +
1.43e-33FFCP PHASE1:Hg19::chr20:21695435..21695452,+#_318e8faa251514f603de4953b28fc6e5p@chr20:21695435..21695452, +
2.03e-33FFCP PHASE1:Mm9::chr15:78817557..78817567,+#_656d9e710202c11e5f03f95012977c49p@chr15:78817557..78817567, +
2.03e-33FFCP PHASE2:Mm9::chr15:78817557..78817567,+#_656d9e710202c11e5f03f95012977c49p@chr15:78817557..78817567, +
3.37e-33FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_0c29bc030c0d47fa9fcd0e13038ae106p26@Myo18a
3.37e-33FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_0c29bc030c0d47fa9fcd0e13038ae106p26@Myo18a
4.33e-33FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_f4d8849d31c7429ed66c621519a205c9p@chr2:32482372..32482381, +
4.33e-33FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_f4d8849d31c7429ed66c621519a205c9p@chr9:21934585..21934591, -
4.33e-33FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_f4d8849d31c7429ed66c621519a205c9p@chr2:32482372..32482381, +
4.33e-33FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_f4d8849d31c7429ed66c621519a205c9p@chr8:75097542..75097549, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005866&oldid=3274487"