UBERON:0004923: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004923 | |||
|is_a=UBERON:0000064 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=organ component layer | ||
|namespace= | |||
|obo_creation_date= | |||
|part_of=UBERON:0000060 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref=FMA:82485 | |||
}} | }} | ||
Revision as of 11:33, 12 September 2014
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000064(organ part) |
|---|---|
| part_of: | UBERON:0000060(anatomical wall) |
Children
| is a: | UBERON:0000158 (membranous layer),UBERON:0000344 (mucosa),UBERON:0001213 (intestinal villus),UBERON:0001295 (endometrium),UBERON:0001781 (layer of retina),UBERON:0004457 (cavity lining),UBERON:0004797 (blood vessel layer),UBERON:0005283 (tela choroidea),UBERON:0005742 (adventitia),UBERON:0005983 (heart layer),UBERON:0012430 (tunica fibrosa of eyeball),UBERON:0013754 (integumentary system layer),UBERON:0016548 (central nervous system gray matter layer) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10047-101G2 (tonsil, adult, pool1)
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
- 10255-104C3
- 10256-104C4
- 10257-104C5
- 10258-104C6
- 10259-104C7
- 10260-104C8 (Ileum epithelium, treated with RANKL, day03, pool3)
... further results Mouse (Mus musculus)
- 10047-101G2 (tonsil, adult, pool1)
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
- 10255-104C3
- 10256-104C4
- 10257-104C5
- 10258-104C6
- 10259-104C7
- 10260-104C8 (Ileum epithelium, treated with RANKL, day03, pool3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004923 (organ component layer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.39e-38 | FFCP PHASE2:Mm9::chr5:135442349..135442362,-#_ad36486ed97de03f9aa6fa74857eabe0 | p@chr5:135442349..135442362, - |
| 2.39e-38 | FFCP PHASE1:Mm9::chr5:135442349..135442362,-#_ad36486ed97de03f9aa6fa74857eabe0 | p@chr5:135442349..135442362, - |
| 6.56e-38 | FFCP PHASE2:Hg19::chr3:55384975..55384986,-#_c725b82a66c92d8d477a59be2eded9fe | p1@ENST00000469806 |
| 6.56e-38 | FFCP PHASE1:Hg19::chr3:55384975..55384986,-#_c725b82a66c92d8d477a59be2eded9fe | p1@ENST00000469806 |
| 1.13e-36 | FFCP PHASE1:Mm9::chr1:176260649..176260652,+#_1c6fd14c63068f4b33fc956317b386a4 | p1@1810030J14Rik, p1@LOC100503310 |
| 1.13e-36 | FFCP PHASE2:Mm9::chr1:176260649..176260652,+#_1c6fd14c63068f4b33fc956317b386a4 | p1@1810030J14Rik, p1@LOC100503310 |
| 1.18e-36 | FFCP PHASE1:Mm9::chr18:61795043..61795050,-#_eaec3926cd88fc3fae0a06e074226c64 | p@chr18:61795043..61795050, - |
| 1.18e-36 | FFCP PHASE2:Mm9::chr18:61795043..61795050,-#_eaec3926cd88fc3fae0a06e074226c64 | p@chr18:61795043..61795050, - |
| 1.76e-35 | FFCP PHASE2:Mm9::chr18:66635277..66635296,+#_4d31c920d492710e9738719531f53515 | p@chr18:66635277..66635296, + |
| 1.76e-35 | FFCP PHASE1:Mm9::chr18:66635277..66635296,+#_4d31c920d492710e9738719531f53515 | p@chr18:66635277..66635296, + |
| 6.98e-35 | FFCP PHASE1:Mm9::chr15:24875237..24875240,+#_c149218b78770b2cabf3ae37cc90c7ae | p@chr15:24875237..24875240, + |
| 6.98e-35 | FFCP PHASE2:Mm9::chr15:24875237..24875240,+#_c149218b78770b2cabf3ae37cc90c7ae | p@chr15:24875237..24875240, + |
| 5.04e-34 | FFCP PHASE2:Mm9::chr7:107413155..107413177,+#_18165e46087f394b5151fa6a17a56886 | p1@Gpx2-ps1 |
| 5.04e-34 | FFCP PHASE1:Mm9::chr7:107413155..107413177,+#_18165e46087f394b5151fa6a17a56886 | p1@Gpx2-ps1 |
| 9.9e-34 | FFCP PHASE2:Mm9::chr8:22814114..22814121,-#_7c61397c19f1864c8c4e511673a15b22 | p1@AY761184 |
| 9.9e-34 | FFCP PHASE1:Mm9::chr8:22814114..22814121,-#_7c61397c19f1864c8c4e511673a15b22 | p1@AY761184 |
| 4.01e-33 | FFCP PHASE1:Mm9::chr4:62163210..62163216,-#_4effbac900390572d33f77f78df152ed | p3@Hdhd3 |
| 4.01e-33 | FFCP PHASE2:Mm9::chr4:62163210..62163216,-#_4effbac900390572d33f77f78df152ed | p3@Hdhd3 |
| 3.96e-32 | FFCP PHASE1:Hg19::chr15:68344995..68345013,+#_fbf05327e3a8728c5f22de00a316f5b0 | p@chr15:68344995..68345013, + |
| 3.96e-32 | FFCP PHASE2:Hg19::chr15:68344995..68345013,+#_fbf05327e3a8728c5f22de00a316f5b0 | p@chr15:68344995..68345013, + |
| 5.79e-32 | FFCP PHASE1:Mm9::chr16:30055801..30055806,+#_f75d5deeb4fd4bbc1f2fb3ee93a3e665 | p@chr16:30055801..30055806, + |
| 5.79e-32 | FFCP PHASE2:Mm9::chr16:30055801..30055806,+#_f75d5deeb4fd4bbc1f2fb3ee93a3e665 | p@chr16:30055801..30055806, + |
| 9.06e-32 | FFCP PHASE1:Mm9::chr17:36183506..36183515,-#_075a2690a18bd87cf8c878ba776e0d8d | p@chr17:36183506..36183515, - |
| 9.06e-32 | FFCP PHASE2:Mm9::chr17:36183506..36183515,-#_075a2690a18bd87cf8c878ba776e0d8d | p@chr17:36183506..36183515, - |
| 1.17e-31 | FFCP PHASE2:Mm9::chr14:54852225..54852239,+#_9194d02465aac015664b8aa8c38d9f16 | p@chr14:54852225..54852239, + |
| 1.17e-31 | FFCP PHASE1:Mm9::chr14:54852225..54852239,+#_9194d02465aac015664b8aa8c38d9f16 | p@chr14:54852225..54852239, + |
| 1.42e-31 | FFCP PHASE2:Mm9::chr4:155029114..155029133,-#_f2d51f4ad9da3ab0dff2977a4d70bac6 | p@chr4:155029114..155029133, - |
| 1.42e-31 | FFCP PHASE1:Mm9::chr4:155029114..155029133,-#_f2d51f4ad9da3ab0dff2977a4d70bac6 | p@chr4:155029114..155029133, - |
| 4.0e-31 | FFCP PHASE1:Mm9::chr1:183215926..183215959,+#_7eda1395f7e25fb2f6c4f34725e179f6 | p@chr1:183215926..183215959, + |
| 4.0e-31 | FFCP PHASE2:Mm9::chr1:183215926..183215959,+#_7eda1395f7e25fb2f6c4f34725e179f6 | p@chr1:183215926..183215959, + |
| 9.79e-31 | FFCP PHASE2:Mm9::chr17:88002968..88003014,+#_0678ea4cd082ea047152dd6f900ce1e9 | p@chr17:88002968..88003014, + |
| 9.79e-31 | FFCP PHASE1:Mm9::chr17:88002968..88003014,+#_0678ea4cd082ea047152dd6f900ce1e9 | p@chr17:88002968..88003014, + |
| 1.1e-30 | FFCP PHASE1:Mm9::chr10:115624741..115624744,+#_acde028a42dab6cdb079e87fe74014a9 | p@chr10:115624741..115624744, + |
| 1.1e-30 | FFCP PHASE2:Mm9::chr10:115624741..115624744,+#_acde028a42dab6cdb079e87fe74014a9 | p@chr10:115624741..115624744, + |
| 1.61e-30 | FFCP PHASE1:Mm9::chr18:64820812..64820837,+#_344d740333657a8a279593ecfdd894a0 | p@chr18:64820812..64820837, + |
| 1.61e-30 | FFCP PHASE2:Mm9::chr18:64820812..64820837,+#_344d740333657a8a279593ecfdd894a0 | p@chr18:64820812..64820837, + |
| 3.92e-30 | FFCP PHASE2:Mm9::chr7:87331183..87331212,+#_ba13e8ef98e6028f3b8b285a316077a8 | p@chr7:87331183..87331212, + |
| 3.92e-30 | FFCP PHASE1:Mm9::chr7:87331183..87331212,+#_ba13e8ef98e6028f3b8b285a316077a8 | p@chr7:87331183..87331212, + |
| 4.6e-30 | FFCP PHASE1:Mm9::chr5:66382473..66382485,-#_1fae301bf71d0dd8d8ff2574a6dc993a | p@chr5:66382473..66382485, - |
| 4.6e-30 | FFCP PHASE2:Mm9::chr5:66382473..66382485,-#_1fae301bf71d0dd8d8ff2574a6dc993a | p@chr5:66382473..66382485, - |
| 8.15e-30 | FFCP PHASE2:Mm9::chr8:22466694..22466699,-#_07ba072313d860a728945cb96b9c389a | p1@Defa-rs1 |
| 8.15e-30 | FFCP PHASE1:Mm9::chr8:22466694..22466699,-#_07ba072313d860a728945cb96b9c389a | p1@Defa-rs1 |
| 8.41e-30 | FFCP PHASE2:Mm9::chr10:80565428..80565433,+#_6b2399e45e3871caf9b7fbe931565c85 | p@chr10:80565428..80565433, + |
| 8.41e-30 | FFCP PHASE1:Mm9::chr10:80565428..80565433,+#_6b2399e45e3871caf9b7fbe931565c85 | p@chr10:80565428..80565433, + |
| 8.43e-30 | FFCP PHASE1:Hg19::chr11:8857295..8857310,-#_e97ee7b6402dbce0b380e77de0a8cd75 | p21@ST5 |
| 8.43e-30 | FFCP PHASE2:Hg19::chr11:8857295..8857310,-#_e97ee7b6402dbce0b380e77de0a8cd75 | p21@ST5 |
| 8.88e-30 | FFCP PHASE1:Hg19::chr11:8857248..8857269,-#_f989a8c8931918793973b5e6d30fefd4 | p16@ST5 |
| 8.88e-30 | FFCP PHASE2:Hg19::chr11:8857248..8857269,-#_f989a8c8931918793973b5e6d30fefd4 | p16@ST5 |
| 1.2e-29 | FFCP PHASE2:Mm9::chr3:122215917..122215967,-#_75c3e901ba4a95841ed360bd276041e6 | p@chr3:122215917..122215967, - |
| 1.2e-29 | FFCP PHASE1:Mm9::chr3:122215917..122215967,-#_75c3e901ba4a95841ed360bd276041e6 | p@chr3:122215917..122215967, - |
| 1.34e-29 | FFCP PHASE2:Mm9::chr10:34618028..34618035,+#_d91d07ada86a829db71e8ba70f4b9215 | p@chr10:34618028..34618035, + |
| 1.34e-29 | FFCP PHASE1:Mm9::chr10:34618028..34618035,+#_d91d07ada86a829db71e8ba70f4b9215 | p@chr10:34618028..34618035, + |
| 1.44e-29 | FFCP PHASE1:Mm9::chr4:119330719..119330733,-#_b94b04108d168a1e04899d947c4acf68 | p@chr4:119330719..119330733, - |
| 1.44e-29 | FFCP PHASE2:Mm9::chr4:119330719..119330733,-#_b94b04108d168a1e04899d947c4acf68 | p@chr4:119330719..119330733, - |
| 1.59e-29 | FFCP PHASE2:Hg19::chr19:36592982..36592993,+#_6f3f82985fe38d1111e1e8ff6ca2271b | p@chr19:36592982..36592993, + |
| 1.59e-29 | FFCP PHASE1:Hg19::chr19:36592982..36592993,+#_6f3f82985fe38d1111e1e8ff6ca2271b | p@chr19:36592982..36592993, + |
| 1.81e-29 | FFCP PHASE2:Hg19::chr2:237683156..237683171,+#_7bc3afa25789aee516c0e201b9c27762 | p@chr2:237683156..237683171, + |
| 1.81e-29 | FFCP PHASE1:Hg19::chr2:237683156..237683171,+#_7bc3afa25789aee516c0e201b9c27762 | p@chr2:237683156..237683171, + |
| 2.43e-29 | FFCP PHASE2:Mm9::chr16:34120215..34120264,+#_6a8b252e869d93e2a01f75537f89b489 | p@chr16:34120215..34120264, + |
| 2.43e-29 | FFCP PHASE1:Mm9::chr16:34120215..34120264,+#_6a8b252e869d93e2a01f75537f89b489 | p@chr16:34120215..34120264, + |
| 4.66e-29 | FFCP PHASE1:Mm9::chr8:83335499..83335501,+#_d9666026e248b47bd77de1914458c1f8 | p@chr8:83335499..83335501, + |
| 4.66e-29 | FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_d9666026e248b47bd77de1914458c1f8 | p@chr8:122335239..122335244, + |
| 4.66e-29 | FFCP PHASE2:Mm9::chr8:83335499..83335501,+#_d9666026e248b47bd77de1914458c1f8 | p@chr8:83335499..83335501, + |
| 4.66e-29 | FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_d9666026e248b47bd77de1914458c1f8 | p@chr8:122335239..122335244, + |
| 7.07e-29 | FFCP PHASE2:Mm9::chr9:123587991..123587996,-#_bd36aa2c4e941d0467473a1b2ddfb036 | p3@Slc6a20a |
| 7.07e-29 | FFCP PHASE1:Mm9::chr9:123587991..123587996,-#_bd36aa2c4e941d0467473a1b2ddfb036 | p3@Slc6a20a |
| 9.55e-29 | FFCP PHASE1:Mm9::chr18:64350156..64350174,+#_5f64eb5708ca0637e2defeb6a71f2c0d | p@chr18:64350156..64350174, + |
| 9.55e-29 | FFCP PHASE2:Mm9::chr18:64350156..64350174,+#_5f64eb5708ca0637e2defeb6a71f2c0d | p@chr18:64350156..64350174, + |
| 1.0e-28 | FFCP PHASE2:Mm9::chr19:4047063..4047070,+#_c0b88f1e91365f5837145044f63f10d4 | p@chr19:4047063..4047070, + |
| 1.0e-28 | FFCP PHASE1:Mm9::chr19:4047063..4047070,+#_c0b88f1e91365f5837145044f63f10d4 | p@chr19:4047063..4047070, + |
| 1.39e-28 | FFCP PHASE1:Mm9::chr6:122541491..122541502,-#_ea9d5f5a585e7aa033c19d3bf0a9e038 | p@chr6:122541491..122541502, - |
| 1.39e-28 | FFCP PHASE2:Mm9::chr6:122541491..122541502,-#_ea9d5f5a585e7aa033c19d3bf0a9e038 | p@chr6:122541491..122541502, - |
| 1.68e-28 | FFCP PHASE1:Mm9::chr18:75457242..75457248,+#_8caf7ae6ea33fd3c346b815f0c1a403d | p@chr18:75457242..75457248, + |
| 1.68e-28 | FFCP PHASE2:Mm9::chr18:75457242..75457248,+#_8caf7ae6ea33fd3c346b815f0c1a403d | p@chr18:75457242..75457248, + |
| 2.23e-28 | FFCP PHASE2:Mm9::chr5:64812671..64812694,+#_77538e4a118d036de21c9122dc53f809 | p@chr5:64812671..64812694, + |
| 2.23e-28 | FFCP PHASE1:Mm9::chr5:64812671..64812694,+#_77538e4a118d036de21c9122dc53f809 | p@chr5:64812671..64812694, + |
| 3.0e-28 | FFCP PHASE1:Mm9::chr19:55942681..55942684,+#_f4f267589ece5c7f280511c7742a0824 | p@chr19:55942681..55942684, + |
| 3.0e-28 | FFCP PHASE2:Mm9::chr19:55942681..55942684,+#_f4f267589ece5c7f280511c7742a0824 | p@chr19:55942681..55942684, + |
| 4.13e-28 | FFCP PHASE1:Mm9::chr17:37026609..37026620,-#_cb3a7525be4f0ad601aaf037264ad72a | p3@Trim40 |
| 4.13e-28 | FFCP PHASE2:Mm9::chr17:37026609..37026620,-#_cb3a7525be4f0ad601aaf037264ad72a | p3@Trim40 |
| 4.22e-28 | FFCP PHASE1:Mm9::chr15:78681575..78681587,-#_55f520ffa5e3a58941c4156115db9161 | p@chr15:78681575..78681587, - |
| 4.22e-28 | FFCP PHASE2:Mm9::chr15:78681575..78681587,-#_55f520ffa5e3a58941c4156115db9161 | p@chr15:78681575..78681587, - |
| 5.0e-28 | FFCP PHASE2:Mm9::chr19:42820294..42820305,+#_a443e05156aa8b9b1c96f9544e1ddd6c | p@chr19:42820294..42820305, + |
| 5.0e-28 | FFCP PHASE1:Mm9::chr19:42820294..42820305,+#_a443e05156aa8b9b1c96f9544e1ddd6c | p@chr19:42820294..42820305, + |
| 5.0e-28 | FFCP PHASE1:Mm9::chr6:78416808..78416822,-#_a443e05156aa8b9b1c96f9544e1ddd6c | p@chr6:78416808..78416822, - |
| 5.0e-28 | FFCP PHASE2:Mm9::chr6:78416808..78416822,-#_a443e05156aa8b9b1c96f9544e1ddd6c | p@chr6:78416808..78416822, - |
| 5.66e-28 | FFCP PHASE1:Mm9::chr7:121989839..121989852,+#_00270847c5d36d1c7ebb31d9eef0ef64 | p@chr7:121989839..121989852, + |
| 5.66e-28 | FFCP PHASE2:Mm9::chr7:121989839..121989852,+#_00270847c5d36d1c7ebb31d9eef0ef64 | p@chr7:121989839..121989852, + |
| 8.75e-28 | FFCP PHASE1:Mm9::chr1:74461717..74461728,-#_ea6f14adf2b11315ffb8193ef1d721db | p@chr1:74461717..74461728, - |
| 8.75e-28 | FFCP PHASE2:Mm9::chr1:74461717..74461728,-#_ea6f14adf2b11315ffb8193ef1d721db | p@chr1:74461717..74461728, - |
| 9.31e-28 | FFCP PHASE2:Mm9::chr12:80764821..80764824,+#_636d7374dcc9ab0fe5d89fed2958b860 | p@chr12:80764821..80764824, + |
| 9.31e-28 | FFCP PHASE1:Mm9::chr12:80764821..80764824,+#_636d7374dcc9ab0fe5d89fed2958b860 | p@chr12:80764821..80764824, + |
| 1.04e-27 | FFCP PHASE1:Hg19::chr11:8857215..8857232,-#_853aceeba1a2146fcce98d4903ed9b6a | p17@ST5 |
| 1.04e-27 | FFCP PHASE2:Hg19::chr11:8857215..8857232,-#_853aceeba1a2146fcce98d4903ed9b6a | p17@ST5 |
| 1.3e-27 | FFCP PHASE2:Mm9::chr18:21249664..21249690,+#_76f67d93ee45233cb85daee3c40073ec | p@chr18:21249664..21249690, + |
| 1.3e-27 | FFCP PHASE1:Mm9::chr18:21249664..21249690,+#_76f67d93ee45233cb85daee3c40073ec | p@chr18:21249664..21249690, + |
| 1.48e-27 | FFCP PHASE1:Mm9::chr7:96869911..96869915,+#_4a91cb2e65798755161d7e7e9add5bd8 | p@chr7:96869911..96869915, + |
| 1.48e-27 | FFCP PHASE2:Mm9::chr7:96869911..96869915,+#_4a91cb2e65798755161d7e7e9add5bd8 | p@chr7:96869911..96869915, + |
| 1.48e-27 | FFCP PHASE1:Mm9::chr7:4101973..4101978,-#_4a91cb2e65798755161d7e7e9add5bd8 | p4@Leng9 |
| 1.48e-27 | FFCP PHASE2:Mm9::chr7:4101973..4101978,-#_4a91cb2e65798755161d7e7e9add5bd8 | p4@Leng9 |
