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{{UBERON
{{UBERON
|id=UBERON:0002472
|alt_id=UBERON:MA_0002717-MIAA_0000093
|name=stylopod
|namespace=
|def="Limb segment that is the proximal part of the limb (e.g. between shoulder and elbow)." []
|xref=EFO:0000879;;FMA:83014;;MA:0002717;;MAT:0000093;;MIAA:0000093
|is_a=UBERON:0002529
|synonym="propodium" EXACT [MA:th];;"proximal free limb segment" EXACT [FMA:83014];;"proximal part of limb" BROAD [];;"stylopodial limb segment" EXACT [MA:th];;"stylopodium" EXACT []
|comment=Naming conventions for pod terms under discussion within phenoscape group
|comment=Naming conventions for pod terms under discussion within phenoscape group
|alt_id=UBERON:MA_0002717-MIAA_0000093
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Limb segment that is the proximal part of the limb (e.g. between shoulder and elbow)." []
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002472
|is_a=UBERON:0002529
|is_obsolete=
|located_in=
|located_in=
|name=stylopod
|namespace=
|obo_creation_date=
|part_of=UBERON:0002101
|part_of=UBERON:0002101
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="propodium" EXACT [MA:th];;"proximal free limb segment" EXACT [FMA:83014];;"proximal part of limb" BROAD [];;"stylopodial limb segment" EXACT [MA:th];;"stylopodium" EXACT []
|union_of=
|xref=EFO:0000879;;FMA:83014;;MA:0002717;;MAT:0000093;;MIAA:0000093
}}
}}

Revision as of 11:17, 12 September 2014

Name:stylopod
Definition:"Limb segment that is the proximal part of the limb (e.g. between shoulder and elbow)." []
Xrefs:
links:

EFO:0000879
FMA:83014
MA:0002717
MAT:0000093

MIAA:0000093
Synonyms: "propodium" EXACT [MA:th]
"proximal free limb segment" EXACT [FMA:83014]
"proximal part of limb" BROAD []
"stylopodial limb segment" EXACT [MA:th]
"stylopodium" EXACT []
Comments:Naming conventions for pod terms under discussion within phenoscape group
Alt_id: UBERON:MA_0002717-MIAA_0000093
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002529(limb segment)
part_of:UBERON:0002101(limb)



Children

is a:UBERON:0000376 (hindlimb stylopod)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002472 (stylopod), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.65e-69FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_474ea998ea570576bf508d9ba813c6f2p@chr2:32482372..32482381, +
1.65e-69FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_474ea998ea570576bf508d9ba813c6f2p@chr8:75097542..75097549, +
1.65e-69FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_474ea998ea570576bf508d9ba813c6f2p@chr2:32482372..32482381, +
1.65e-69FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_474ea998ea570576bf508d9ba813c6f2p@chr8:75097542..75097549, +
4.2e-56FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_2edfcb4a23474d1feba0bd15538d0b8cp@chr1:174140324..174140335, -
4.2e-56FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_2edfcb4a23474d1feba0bd15538d0b8cp@chr11:67063327..67063335, +
4.2e-56FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_2edfcb4a23474d1feba0bd15538d0b8cp@chr16:24096441..24096449, +
4.2e-56FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_2edfcb4a23474d1feba0bd15538d0b8cp@chr1:174140324..174140335, -
4.2e-56FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_2edfcb4a23474d1feba0bd15538d0b8cp@chr11:67063327..67063335, +
4.2e-56FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_2edfcb4a23474d1feba0bd15538d0b8cp@chr16:24096441..24096449, +
5.81e-56FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_18be4f42681d1fc785eea18115a1f252p@chr1:174143249..174143260, -
5.81e-56FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_18be4f42681d1fc785eea18115a1f252p@chr1:174143249..174143260, -
1.64e-52FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_d11a240ac4a687499e5548c1250919f6p@chr12:70396969..70396979, +
1.64e-52FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_d11a240ac4a687499e5548c1250919f6p@chr12:70396969..70396979, +
1.54e-49FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_f46185e3182a88605537e6dcfe45b888p@chr19:4876870..4876880, -
1.54e-49FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_f46185e3182a88605537e6dcfe45b888p@chr19:4876870..4876880, -
1.49e-48FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_d1c1900c3caf2f6e7af7a1f6e6523a6fp3@Asb16
1.49e-48FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_d1c1900c3caf2f6e7af7a1f6e6523a6fp3@Asb16
3.7e-47FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_6fea81ba798b4f0af548137e6ed9cb6ap@chr11:75409652..75409664, +
3.7e-47FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_6fea81ba798b4f0af548137e6ed9cb6ap@chr11:75409652..75409664, +
1.43e-46FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_5583b9a83f88b5fcfaf192c3870ba86cp@chr8:126415826..126415839, +
1.43e-46FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_5583b9a83f88b5fcfaf192c3870ba86cp@chr8:126415826..126415839, +
3.43e-44FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_cffd91768a1dd46c0494f5029a49e27fp@chr7:133604286..133604297, -
3.43e-44FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_cffd91768a1dd46c0494f5029a49e27fp@chr7:133604286..133604297, -
1.74e-43FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_c2f6c235544beebd52678fddd038614ep5@Pla2g5
1.74e-43FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_c2f6c235544beebd52678fddd038614ep5@Pla2g5
1.46e-40FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_c1972716b8199341297e9bada11dfaefp@chr11:67056544..67056589, -
1.46e-40FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_c1972716b8199341297e9bada11dfaefp@chr11:67056544..67056589, -
1.84e-40FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_ce397ef38b456b6d9d1153e4c1adadbep@chr6:90552017..90552024, +
1.84e-40FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_ce397ef38b456b6d9d1153e4c1adadbep@chr6:90552017..90552024, +
2.32e-40FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_4e923dc768f266491782dd56213fbee6p@chr6:34436258..34436292, +
2.32e-40FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_4e923dc768f266491782dd56213fbee6p@chr6:34436258..34436292, +
3.69e-40FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_f4c580d14a6248dae12262dcd95bbd06p@chr11:67069796..67069817, -
3.69e-40FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_f4c580d14a6248dae12262dcd95bbd06p@chr11:67069796..67069817, -
4.64e-40FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_f0fbf2eddb0e18b302588a49cabb0899p@chr8:107702369..107702386, +
4.64e-40FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_f0fbf2eddb0e18b302588a49cabb0899p@chr8:107702369..107702386, +
7.27e-40FFCP PHASE2:Mm9::chr11:67059271..67059285,+#_af92e7d1a3b55ca7035a36e48d640f47p@chr11:67059271..67059285, +
7.27e-40FFCP PHASE2:Mm9::chr1:66991496..66991506,+#_af92e7d1a3b55ca7035a36e48d640f47p@chr1:66991496..66991506, +
7.27e-40FFCP PHASE2:Mm9::chr14:70207601..70207626,+#_af92e7d1a3b55ca7035a36e48d640f47p@chr14:70207601..70207626, +
7.27e-40FFCP PHASE1:Mm9::chr14:70207601..70207626,+#_af92e7d1a3b55ca7035a36e48d640f47p@chr14:70207601..70207626, +
7.27e-40FFCP PHASE1:Mm9::chr1:174140351..174140357,-#_af92e7d1a3b55ca7035a36e48d640f47p@chr1:174140351..174140357, -
7.27e-40FFCP PHASE1:Mm9::chr1:66991496..66991506,+#_af92e7d1a3b55ca7035a36e48d640f47p@chr1:66991496..66991506, +
7.27e-40FFCP PHASE2:Mm9::chr11:67062759..67062768,+#_af92e7d1a3b55ca7035a36e48d640f47p@chr11:67062759..67062768, +
7.27e-40FFCP PHASE2:Mm9::chr16:77077366..77077377,+#_af92e7d1a3b55ca7035a36e48d640f47p@chr16:77077366..77077377, +
7.27e-40FFCP PHASE2:Mm9::chr1:174140351..174140357,-#_af92e7d1a3b55ca7035a36e48d640f47p@chr1:174140351..174140357, -
7.27e-40FFCP PHASE2:Mm9::chr4:150276182..150276195,-#_af92e7d1a3b55ca7035a36e48d640f47p13@Park7
7.27e-40FFCP PHASE1:Mm9::chr16:77077366..77077377,+#_af92e7d1a3b55ca7035a36e48d640f47p@chr16:77077366..77077377, +
7.27e-40FFCP PHASE1:Mm9::chr11:67059271..67059285,+#_af92e7d1a3b55ca7035a36e48d640f47p@chr11:67059271..67059285, +
7.27e-40FFCP PHASE1:Mm9::chr4:150276182..150276195,-#_af92e7d1a3b55ca7035a36e48d640f47p13@Park7
7.27e-40FFCP PHASE1:Mm9::chr11:67062759..67062768,+#_af92e7d1a3b55ca7035a36e48d640f47p@chr11:67062759..67062768, +
9.85e-40FFCP PHASE2:Mm9::chr11:67068279..67068289,+#_c4f219881be24a5c8d828f0e43bc2646p@chr11:67068279..67068289, +
9.85e-40FFCP PHASE1:Mm9::chr11:67068279..67068289,+#_c4f219881be24a5c8d828f0e43bc2646p@chr11:67068279..67068289, +
9.85e-40FFCP PHASE1:Mm9::chr2:52119179..52119188,-#_c4f219881be24a5c8d828f0e43bc2646p@chr2:52119179..52119188, -
9.85e-40FFCP PHASE2:Mm9::chr7:12485281..12485286,+#_c4f219881be24a5c8d828f0e43bc2646p@chr7:12485281..12485286, +
9.85e-40FFCP PHASE1:Mm9::chr7:133602405..133602416,-#_c4f219881be24a5c8d828f0e43bc2646p@chr7:133602405..133602416, -
9.85e-40FFCP PHASE2:Mm9::chr7:133590511..133590515,-#_c4f219881be24a5c8d828f0e43bc2646p@chr7:133590511..133590515, -
9.85e-40FFCP PHASE2:Mm9::chr7:133602405..133602416,-#_c4f219881be24a5c8d828f0e43bc2646p@chr7:133602405..133602416, -
9.85e-40FFCP PHASE2:Mm9::chr2:52119179..52119188,-#_c4f219881be24a5c8d828f0e43bc2646p@chr2:52119179..52119188, -
9.85e-40FFCP PHASE2:Mm9::chr7:133591409..133591416,-#_c4f219881be24a5c8d828f0e43bc2646p11@Atp2a1
9.85e-40FFCP PHASE1:Mm9::chr7:133591409..133591416,-#_c4f219881be24a5c8d828f0e43bc2646p11@Atp2a1
9.85e-40FFCP PHASE1:Mm9::chr7:12485281..12485286,+#_c4f219881be24a5c8d828f0e43bc2646p@chr7:12485281..12485286, +
9.85e-40FFCP PHASE1:Mm9::chr7:133590511..133590515,-#_c4f219881be24a5c8d828f0e43bc2646p@chr7:133590511..133590515, -
1.33e-39FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_37025bd21988bab9b2c1065f583392eep26@Myo18a
1.33e-39FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_37025bd21988bab9b2c1065f583392eep26@Myo18a
1.8e-39FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_c5e44ff4c222a1b727c212c7c01553dfp@chr9:21934585..21934591, -
1.8e-39FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_c5e44ff4c222a1b727c212c7c01553dfp@chr9:21934585..21934591, -
1.01e-37FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_f0eda8310611e8ead3b2abad8a1e107ep@chr2:32482387..32482399, +
1.01e-37FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_f0eda8310611e8ead3b2abad8a1e107ep@chr2:32482387..32482399, +
5.61e-37FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_cc37f420ab942d368c981928f9a22c66p@chr7:133590998..133591009, -
5.61e-37FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_cc37f420ab942d368c981928f9a22c66p@chr7:133590998..133591009, -
6.65e-37FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_dc3525572e0530cc977c93bfe30dd01ep2@Myoz3
6.65e-37FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_dc3525572e0530cc977c93bfe30dd01ep2@Myoz3
9.33e-37FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_09de7d5152b226b667b80cd457762b6bp2@Myh4
9.33e-37FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_09de7d5152b226b667b80cd457762b6bp2@Myh4
5.77e-36FFCP PHASE2:Mm9::chr2:180890942..180890956,-#_70ecd5b39c335f04aa84da2a22fab8c3p@chr2:180890942..180890956, -
5.77e-36FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_70ecd5b39c335f04aa84da2a22fab8c3p@chr2:180890942..180890956, -
7.08e-36FFCP PHASE2:Mm9::chr12:15936419..15936439,+#_a61301cafa788461b9e5624350006e12p@chr12:15936419..15936439, +
7.08e-36FFCP PHASE2:Mm9::chr4:99628094..99628114,+#_a61301cafa788461b9e5624350006e12p6@Pgm2
7.08e-36FFCP PHASE1:Mm9::chr4:99628094..99628114,+#_a61301cafa788461b9e5624350006e12p6@Pgm2
7.08e-36FFCP PHASE1:Mm9::chr12:15936419..15936439,+#_a61301cafa788461b9e5624350006e12p@chr12:15936419..15936439, +
1.3e-35FFCP PHASE1:Mm9::chr7:58766361..58766370,+#_b63486a4a0557171a10752d21784b77dp3@Ano5
1.3e-35FFCP PHASE1:Mm9::chr2:76729527..76729535,-#_b63486a4a0557171a10752d21784b77dp@chr2:76729527..76729535, -
1.3e-35FFCP PHASE2:Mm9::chr7:58766361..58766370,+#_b63486a4a0557171a10752d21784b77dp3@Ano5
1.3e-35FFCP PHASE2:Mm9::chr2:76729527..76729535,-#_b63486a4a0557171a10752d21784b77dp@chr2:76729527..76729535, -
1.42e-35FFCP PHASE1:Mm9::chr7:51761564..51761580,-#_aa91ac73eeaffe5ab44154e270b93b39p@chr7:51761564..51761580, -
1.42e-35FFCP PHASE1:Mm9::chr18:61123512..61123517,+#_aa91ac73eeaffe5ab44154e270b93b39p@chr18:61123512..61123517, +
1.42e-35FFCP PHASE2:Mm9::chr7:134353840..134353843,-#_aa91ac73eeaffe5ab44154e270b93b39p@chr7:134353840..134353843, -
1.42e-35FFCP PHASE1:Mm9::chr15:78021983..78021992,-#_aa91ac73eeaffe5ab44154e270b93b39p@chr15:78021983..78021992, -
1.42e-35FFCP PHASE1:Mm9::chr11:67066194..67066212,-#_aa91ac73eeaffe5ab44154e270b93b39p@chr11:67066194..67066212, -
1.42e-35FFCP PHASE2:Mm9::chr19:4871076..4871091,+#_aa91ac73eeaffe5ab44154e270b93b39p@chr19:4871076..4871091, +
1.42e-35FFCP PHASE2:Mm9::chr4:150281470..150281484,-#_aa91ac73eeaffe5ab44154e270b93b39p@chr4:150281470..150281484, -
1.42e-35FFCP PHASE2:Mm9::chr15:83962465..83962470,-#_aa91ac73eeaffe5ab44154e270b93b39p@chr15:83962465..83962470, -
1.42e-35FFCP PHASE1:Mm9::chr11:66928384..66928391,-#_aa91ac73eeaffe5ab44154e270b93b39p@chr11:66928384..66928391, -
1.42e-35FFCP PHASE2:Mm9::chr15:78021983..78021992,-#_aa91ac73eeaffe5ab44154e270b93b39p@chr15:78021983..78021992, -
1.42e-35FFCP PHASE1:Mm9::chr15:83962465..83962470,-#_aa91ac73eeaffe5ab44154e270b93b39p@chr15:83962465..83962470, -
1.42e-35FFCP PHASE1:Mm9::chr19:4871076..4871091,+#_aa91ac73eeaffe5ab44154e270b93b39p@chr19:4871076..4871091, +
1.42e-35FFCP PHASE1:Mm9::chr11:67064461..67064462,-#_aa91ac73eeaffe5ab44154e270b93b39p@chr11:67064461..67064462, -
1.42e-35FFCP PHASE1:Mm9::chr4:150281470..150281484,-#_aa91ac73eeaffe5ab44154e270b93b39p@chr4:150281470..150281484, -
1.42e-35FFCP PHASE2:Mm9::chr11:67066194..67066212,-#_aa91ac73eeaffe5ab44154e270b93b39p@chr11:67066194..67066212, -
1.42e-35FFCP PHASE2:Mm9::chr11:67064461..67064462,-#_aa91ac73eeaffe5ab44154e270b93b39p@chr11:67064461..67064462, -

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