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{{CL
{{CL
|id=CL:0000351
|alt_id=
|name=trophoblast cell
|namespace=cell
|def="A cell lining the outside of the blastocyst. After binding to the endometrium, trophoblast cells develop into two distinct layers, an inner layer of mononuclear cytotrophoblast cells and an outer layer of continuous multinuclear cytoplasm, the syncytiotrophoblast cells, which form the early fetal-maternal interface." [GOC:tfm, MESH:A.11.936]
|xref=FMA:83028
|is_a=CL:0000349
|synonym="trophoblastic cell" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell lining the outside of the blastocyst. After binding to the endometrium, trophoblast cells develop into two distinct layers, an inner layer of mononuclear cytotrophoblast cells and an outer layer of continuous multinuclear cytoplasm, the syncytiotrophoblast cells, which form the early fetal-maternal interface." [GOC:tfm, MESH:A.11.936]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000351
|is_a=CL:0000349
|is_obsolete=
|located_in=
|located_in=
|name=trophoblast cell
|namespace=cell
|obo_creation_date=
|part_of=UBERON:0000358
|part_of=UBERON:0000358
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="trophoblastic cell" EXACT []
|union_of=
|xref=FMA:83028
}}
}}

Revision as of 10:17, 12 September 2014

Name:trophoblast cell
Namespace:cell
Definition:"A cell lining the outside of the blastocyst. After binding to the endometrium, trophoblast cells develop into two distinct layers, an inner layer of mononuclear cytotrophoblast cells and an outer layer of continuous multinuclear cytoplasm, the syncytiotrophoblast cells, which form the early fetal-maternal interface." [GOC:tfm, MESH:A.11.936]
Xrefs:
links:
FMA:83028
Synonyms: "trophoblastic cell" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000349(extraembryonic cell)
part_of:UBERON:0000358(blastocyst)



Children


is a:FF:0000190 (trophoblast)
derives from:FF:0000626 (trophoblast cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000351 (trophoblast cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr19:53750863..53750906,+#_77265b5f9674245ee15a391309ef24bcp@chr19:53750863..53750906, +
1.58e-86FFCP PHASE1:Mm9::chrX:135868692..135868701,+#_77265b5f9674245ee15a391309ef24bcp@chrX:135868692..135868701, +
1.58e-86FFCP PHASE2:Mm9::chr3:51025125..51025133,+#_77265b5f9674245ee15a391309ef24bcp@chr3:51025125..51025133, +
1.58e-86FFCP PHASE1:Mm9::chrX:132804797..132804808,+#_77265b5f9674245ee15a391309ef24bcp4@Ngfrap1
1.58e-86FFCP PHASE2:Mm9::chr9:59378043..59378047,-#_77265b5f9674245ee15a391309ef24bcp@chr9:59378043..59378047, -
1.58e-86FFCP PHASE1:Mm9::chr7:92689753..92689757,-#_77265b5f9674245ee15a391309ef24bcp@chr7:92689753..92689757, -
1.58e-86FFCP PHASE2:Mm9::chr19:53750863..53750906,+#_77265b5f9674245ee15a391309ef24bcp@chr19:53750863..53750906, +
1.58e-86FFCP PHASE2:Mm9::chrX:135868788..135868795,+#_77265b5f9674245ee15a391309ef24bcp@chrX:135868788..135868795, +
1.58e-86FFCP PHASE1:Mm9::chr14:55557459..55557474,+#_77265b5f9674245ee15a391309ef24bcp6@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chr9:122510273..122510281,+#_77265b5f9674245ee15a391309ef24bcp@chr9:122510273..122510281, +
1.58e-86FFCP PHASE1:Mm9::chr13:68409910..68409914,+#_77265b5f9674245ee15a391309ef24bcp@chr13:68409910..68409914, +
1.58e-86FFCP PHASE1:Mm9::chr14:55557307..55557316,+#_77265b5f9674245ee15a391309ef24bcp11@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chr17:66833174..66833180,-#_77265b5f9674245ee15a391309ef24bcp@chr17:66833174..66833180, -
1.58e-86FFCP PHASE2:Mm9::chrX:132804797..132804808,+#_77265b5f9674245ee15a391309ef24bcp4@Ngfrap1
1.58e-86FFCP PHASE1:Mm9::chrX:135868788..135868795,+#_77265b5f9674245ee15a391309ef24bcp@chrX:135868788..135868795, +
1.58e-86FFCP PHASE2:Mm9::chr14:55556656..55556665,+#_77265b5f9674245ee15a391309ef24bcp@chr14:55556656..55556665, +
1.58e-86FFCP PHASE1:Mm9::chr11:78698925..78698930,+#_77265b5f9674245ee15a391309ef24bcp@chr11:78698925..78698930, +
1.58e-86FFCP PHASE2:Mm9::chr11:114739327..114739352,+#_77265b5f9674245ee15a391309ef24bcp@chr11:114739327..114739352, +
1.58e-86FFCP PHASE2:Mm9::chr4:133574662..133574669,-#_77265b5f9674245ee15a391309ef24bcp2@Lin28a
1.58e-86FFCP PHASE2:Mm9::chr17:66833174..66833180,-#_77265b5f9674245ee15a391309ef24bcp@chr17:66833174..66833180, -
1.58e-86FFCP PHASE1:Mm9::chr8:44265871..44265878,+#_77265b5f9674245ee15a391309ef24bcp2@Triml2
1.58e-86FFCP PHASE1:Mm9::chr6:12861081..12861085,+#_77265b5f9674245ee15a391309ef24bcp@chr6:12861081..12861085, +
1.58e-86FFCP PHASE2:Mm9::chr1:174143295..174143309,-#_77265b5f9674245ee15a391309ef24bcp@chr1:174143295..174143309, -
1.58e-86FFCP PHASE1:Mm9::chr4:9880126..9880128,+#_77265b5f9674245ee15a391309ef24bcp@chr4:9880126..9880128, +
1.58e-86FFCP PHASE1:Mm9::chrX:35180221..35180224,+#_77265b5f9674245ee15a391309ef24bcp1@Rhox6
1.58e-86FFCP PHASE1:Mm9::chr8:44392310..44392319,-#_77265b5f9674245ee15a391309ef24bcp4@Zfp42
1.58e-86FFCP PHASE2:Mm9::chr8:44265871..44265878,+#_77265b5f9674245ee15a391309ef24bcp2@Triml2
1.58e-86FFCP PHASE1:Mm9::chr1:174143295..174143309,-#_77265b5f9674245ee15a391309ef24bcp@chr1:174143295..174143309, -
1.58e-86FFCP PHASE2:Mm9::chr16:66852878..66852880,+#_77265b5f9674245ee15a391309ef24bcp@chr16:66852878..66852880, +
1.58e-86FFCP PHASE1:Mm9::chr14:55557319..55557330,+#_77265b5f9674245ee15a391309ef24bcp7@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chr17:6988793..6988807,-#_77265b5f9674245ee15a391309ef24bcp@chr17:6988793..6988807, -
1.58e-86FFCP PHASE2:Mm9::chr9:114472387..114472401,-#_77265b5f9674245ee15a391309ef24bcp@chr9:114472387..114472401, -
1.58e-86FFCP PHASE1:Mm9::chr13:109236868..109236869,+#_77265b5f9674245ee15a391309ef24bcp@chr13:109236868..109236869, +
1.58e-86FFCP PHASE2:Mm9::chr13:109236868..109236869,+#_77265b5f9674245ee15a391309ef24bcp@chr13:109236868..109236869, +
1.58e-86FFCP PHASE1:Mm9::chr9:59378043..59378047,-#_77265b5f9674245ee15a391309ef24bcp@chr9:59378043..59378047, -
1.58e-86FFCP PHASE2:Mm9::chr14:55557268..55557274,+#_77265b5f9674245ee15a391309ef24bcp14@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chrX:22692718..22692721,+#_77265b5f9674245ee15a391309ef24bcp@chrX:22692718..22692721, +
1.58e-86FFCP PHASE1:Mm9::chr9:114472387..114472401,-#_77265b5f9674245ee15a391309ef24bcp@chr9:114472387..114472401, -
1.58e-86FFCP PHASE1:Mm9::chr2:10444938..10444948,+#_77265b5f9674245ee15a391309ef24bcp@chr2:10444938..10444948, +
1.58e-86FFCP PHASE1:Mm9::chr16:66852878..66852880,+#_77265b5f9674245ee15a391309ef24bcp@chr16:66852878..66852880, +
1.58e-86FFCP PHASE2:Mm9::chr7:92689753..92689757,-#_77265b5f9674245ee15a391309ef24bcp@chr7:92689753..92689757, -
1.58e-86FFCP PHASE1:Mm9::chr11:114739327..114739352,+#_77265b5f9674245ee15a391309ef24bcp@chr11:114739327..114739352, +
1.58e-86FFCP PHASE2:Mm9::chr14:55557459..55557474,+#_77265b5f9674245ee15a391309ef24bcp6@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chr6:122774653..122774665,+#_77265b5f9674245ee15a391309ef24bcp@chr6:122774653..122774665, +
1.58e-86FFCP PHASE2:Mm9::chr13:68409910..68409914,+#_77265b5f9674245ee15a391309ef24bcp@chr13:68409910..68409914, +
1.58e-86FFCP PHASE2:Mm9::chr9:122510273..122510281,+#_77265b5f9674245ee15a391309ef24bcp@chr9:122510273..122510281, +
1.58e-86FFCP PHASE1:Mm9::chr16:44262965..44262975,-#_77265b5f9674245ee15a391309ef24bcp@chr16:44262965..44262975, -
1.58e-86FFCP PHASE2:Mm9::chr6:122774653..122774665,+#_77265b5f9674245ee15a391309ef24bcp@chr6:122774653..122774665, +
1.58e-86FFCP PHASE2:Mm9::chr16:44262965..44262975,-#_77265b5f9674245ee15a391309ef24bcp@chr16:44262965..44262975, -
1.58e-86FFCP PHASE2:Mm9::chr14:55557307..55557316,+#_77265b5f9674245ee15a391309ef24bcp11@Cmtm5
1.58e-86FFCP PHASE2:Mm9::chr4:9880126..9880128,+#_77265b5f9674245ee15a391309ef24bcp@chr4:9880126..9880128, +
1.58e-86FFCP PHASE2:Mm9::chr8:44392310..44392319,-#_77265b5f9674245ee15a391309ef24bcp4@Zfp42
1.58e-86FFCP PHASE2:Mm9::chr12:87810964..87810976,-#_77265b5f9674245ee15a391309ef24bcp@chr12:87810964..87810976, -
1.58e-86FFCP PHASE2:Mm9::chr17:6988793..6988807,-#_77265b5f9674245ee15a391309ef24bcp@chr17:6988793..6988807, -
1.58e-86FFCP PHASE1:Mm9::chr3:51025125..51025133,+#_77265b5f9674245ee15a391309ef24bcp@chr3:51025125..51025133, +
1.58e-86FFCP PHASE1:Mm9::chr14:55556656..55556665,+#_77265b5f9674245ee15a391309ef24bcp@chr14:55556656..55556665, +
1.58e-86FFCP PHASE1:Mm9::chr12:87810964..87810976,-#_77265b5f9674245ee15a391309ef24bcp@chr12:87810964..87810976, -
1.58e-86FFCP PHASE2:Mm9::chrX:35180221..35180224,+#_77265b5f9674245ee15a391309ef24bcp1@Rhox6
1.58e-86FFCP PHASE2:Mm9::chr11:78698925..78698930,+#_77265b5f9674245ee15a391309ef24bcp@chr11:78698925..78698930, +
1.58e-86FFCP PHASE2:Mm9::chr8:28338006..28338016,-#_77265b5f9674245ee15a391309ef24bcp@chr8:28338006..28338016, -
1.58e-86FFCP PHASE2:Mm9::chr6:12861081..12861085,+#_77265b5f9674245ee15a391309ef24bcp@chr6:12861081..12861085, +
1.58e-86FFCP PHASE2:Mm9::chrX:135868692..135868701,+#_77265b5f9674245ee15a391309ef24bcp@chrX:135868692..135868701, +
1.58e-86FFCP PHASE2:Mm9::chr14:55557319..55557330,+#_77265b5f9674245ee15a391309ef24bcp7@Cmtm5
1.58e-86FFCP PHASE2:Mm9::chr2:10444938..10444948,+#_77265b5f9674245ee15a391309ef24bcp@chr2:10444938..10444948, +
1.58e-86FFCP PHASE1:Mm9::chr4:133574662..133574669,-#_77265b5f9674245ee15a391309ef24bcp2@Lin28a
1.58e-86FFCP PHASE2:Mm9::chrX:22692718..22692721,+#_77265b5f9674245ee15a391309ef24bcp@chrX:22692718..22692721, +
1.58e-86FFCP PHASE1:Mm9::chr8:28338006..28338016,-#_77265b5f9674245ee15a391309ef24bcp@chr8:28338006..28338016, -
1.58e-86FFCP PHASE1:Mm9::chr14:55557268..55557274,+#_77265b5f9674245ee15a391309ef24bcp14@Cmtm5
1.33e-65FFCP PHASE2:Mm9::chr14:55557416..55557422,+#_6000ac89ae446baed5c214b5623ea858p13@Cmtm5
1.33e-65FFCP PHASE2:Mm9::chr1:174143273..174143293,-#_6000ac89ae446baed5c214b5623ea858p@chr1:174143273..174143293, -
1.33e-65FFCP PHASE2:Mm9::chr8:109128151..109128162,+#_6000ac89ae446baed5c214b5623ea858p5@Cdh1
1.33e-65FFCP PHASE1:Mm9::chr1:174143273..174143293,-#_6000ac89ae446baed5c214b5623ea858p@chr1:174143273..174143293, -
1.33e-65FFCP PHASE1:Mm9::chr5:66542571..66542582,-#_6000ac89ae446baed5c214b5623ea858p13@Rbm47
1.33e-65FFCP PHASE2:Mm9::chr9:114472360..114472371,-#_6000ac89ae446baed5c214b5623ea858p@chr9:114472360..114472371, -
1.33e-65FFCP PHASE2:Mm9::chr9:118387933..118387942,+#_6000ac89ae446baed5c214b5623ea858p4@Eomes
1.33e-65FFCP PHASE1:Mm9::chr8:44392404..44392412,-#_6000ac89ae446baed5c214b5623ea858p3@Zfp42
1.33e-65FFCP PHASE1:Mm9::chr9:114472360..114472371,-#_6000ac89ae446baed5c214b5623ea858p@chr9:114472360..114472371, -
1.33e-65FFCP PHASE1:Mm9::chr13:120218522..120218537,+#_6000ac89ae446baed5c214b5623ea858p@chr13:120218522..120218537, +
1.33e-65FFCP PHASE1:Mm9::chr16:53576572..53576579,+#_6000ac89ae446baed5c214b5623ea858p@chr16:53576572..53576579, +
1.33e-65FFCP PHASE2:Mm9::chr2:155572913..155572925,+#_6000ac89ae446baed5c214b5623ea858p@chr2:155572913..155572925, +
1.33e-65FFCP PHASE1:Mm9::chr2:172371713..172371724,+#_6000ac89ae446baed5c214b5623ea858p@chr2:172371713..172371724, +
1.33e-65FFCP PHASE2:Mm9::chr13:120218522..120218537,+#_6000ac89ae446baed5c214b5623ea858p@chr13:120218522..120218537, +
1.33e-65FFCP PHASE2:Mm9::chr5:66542571..66542582,-#_6000ac89ae446baed5c214b5623ea858p13@Rbm47
1.33e-65FFCP PHASE1:Mm9::chr2:155572913..155572925,+#_6000ac89ae446baed5c214b5623ea858p@chr2:155572913..155572925, +
1.33e-65FFCP PHASE2:Mm9::chr8:44392404..44392412,-#_6000ac89ae446baed5c214b5623ea858p3@Zfp42
1.33e-65FFCP PHASE2:Mm9::chr16:53576572..53576579,+#_6000ac89ae446baed5c214b5623ea858p@chr16:53576572..53576579, +
1.33e-65FFCP PHASE1:Mm9::chr8:44392345..44392363,-#_6000ac89ae446baed5c214b5623ea858p1@Zfp42
1.33e-65FFCP PHASE1:Mm9::chr9:118387933..118387942,+#_6000ac89ae446baed5c214b5623ea858p4@Eomes
1.33e-65FFCP PHASE1:Mm9::chr14:55557416..55557422,+#_6000ac89ae446baed5c214b5623ea858p13@Cmtm5
1.33e-65FFCP PHASE2:Mm9::chr2:172371713..172371724,+#_6000ac89ae446baed5c214b5623ea858p@chr2:172371713..172371724, +
1.33e-65FFCP PHASE1:Mm9::chr5:30062362..30062371,+#_6000ac89ae446baed5c214b5623ea858p6@Dnajb6
1.33e-65FFCP PHASE2:Mm9::chr5:30062362..30062371,+#_6000ac89ae446baed5c214b5623ea858p6@Dnajb6
1.33e-65FFCP PHASE1:Mm9::chr8:109128151..109128162,+#_6000ac89ae446baed5c214b5623ea858p5@Cdh1
1.33e-65FFCP PHASE2:Mm9::chr8:44392345..44392363,-#_6000ac89ae446baed5c214b5623ea858p1@Zfp42
2.21e-65FFCP PHASE1:Mm9::chr2:122084320..122084337,+#_d83bcbbb43dd347113af2bc6fb5c1ddep@chr2:122084320..122084337, +
2.21e-65FFCP PHASE1:Mm9::chrX:132804817..132804822,+#_d83bcbbb43dd347113af2bc6fb5c1ddep5@Ngfrap1
2.21e-65FFCP PHASE2:Mm9::chr2:122084320..122084337,+#_d83bcbbb43dd347113af2bc6fb5c1ddep@chr2:122084320..122084337, +
2.21e-65FFCP PHASE1:Mm9::chr14:55556576..55556586,+#_d83bcbbb43dd347113af2bc6fb5c1ddep@chr14:55556576..55556586, +
2.21e-65FFCP PHASE2:Mm9::chrX:132804817..132804822,+#_d83bcbbb43dd347113af2bc6fb5c1ddep5@Ngfrap1
2.21e-65FFCP PHASE2:Mm9::chr12:13000114..13000147,+#_d83bcbbb43dd347113af2bc6fb5c1ddep@chr12:13000114..13000147, +

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