FFCP PHASE1:Hg19::chrX:136648753..136648767,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7547 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12874 | |||
|TSSclassifier=strong | |||
|UniProt=Q5JY75 | |||
|association_with_transcript=76bp_to_ENST00000370606_5end | |||
|coexpression_cluster_id=C595 | |||
|description=CAGE_peak_5_at_ZIC3_5end | |||
|id=chrX:136648753..136648767,+ | |||
|ontology_enrichment_celltype=CL:0002322!7.19e-21!5;CL:0000133!1.57e-14!59;CL:0002603!1.74e-12!3;CL:0000064!1.88e-12!3;CL:0005012!1.88e-12!3;CL:0000067!1.88e-12!3;CL:0002304!1.88e-12!3;CL:0000708!4.08e-12!3;CL:0000221!1.76e-11!71;CL:0000075!1.87e-10!27;CL:0000306!1.35e-09!4;CL:0002222!1.35e-09!4;CL:0002224!1.35e-09!4;CL:0000039!2.95e-09!7;CL:0000586!2.95e-09!7;CL:0002575!1.64e-08!2;CL:0000047!3.99e-08!8;CL:0002319!5.70e-08!25;CL:0000333!3.17e-07!41 | |||
|ontology_enrichment_celltype_v019=CL:0002322;5.71e-46;5!CL:0002321;8.87e-22;15!CL:0002603;8.35e-13;3!CL:0000039;4.05e-12;7!CL:0000586;4.05e-12;7!CL:0000075;8.07e-12;27!CL:0000306;3.38e-10;4!CL:0002222;3.38e-10;4!CL:0002224;3.38e-10;4!CL:0000148;6.58e-09;10!CL:0002319;4.17e-08;25!CL:0000710;1.55e-07;20!CL:0000540;7.75e-07;6!CL:0000404;7.75e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,6.28e-46,5;CL:0000133,2.95e-13,59;CL:0002603,1.00e-12,3;CL:0000039,4.81e-12,7;CL:0000586,4.81e-12,7;CL:0000075,7.40e-12,27;CL:0000221,1.15e-10,72;CL:0000047,1.66e-10,8;CL:0000306,3.16e-10,4;CL:0002222,3.16e-10,4;CL:0002224,3.16e-10,4;CL:0000148,6.86e-09,10;CL:0000541,6.86e-09,10;CL:0002319,4.69e-08,25;CL:0000710,1.47e-07,20;CL:0000333,3.40e-07,41;CL:0000540,8.47e-07,6;CL:0000031,8.47e-07,6;CL:0000404,8.47e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0009117;8.46e-15;10!UBERON:0005564;8.46e-15;10!CL:0000133;6.07e-08;59!CL:0000031;7.75e-07;6 | |||
|ontology_enrichment_disease=DOID:3095!4.62e-16!22;DOID:2994!4.62e-16!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.27e-14;22!DOID:2994;1.27e-14;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.38e-14,22;DOID:2994,1.38e-14,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!6.53e-18!94;UBERON:0001016!6.53e-18!94;UBERON:0001017!8.59e-18!82;UBERON:0005743!9.88e-17!86;UBERON:0000924!1.10e-16!173;UBERON:0006601!1.10e-16!173;UBERON:0007625!1.54e-16!11;UBERON:0002346!4.71e-16!90;UBERON:0004121!5.20e-16!169;UBERON:0002037!6.60e-16!6;UBERON:0006215!6.60e-16!6;UBERON:0000488!1.18e-15!4;UBERON:0003075!2.07e-15!86;UBERON:0007284!2.07e-15!86;UBERON:0003076!5.80e-15!15;UBERON:0003057!5.80e-15!15;UBERON:0001801!8.88e-13!14;UBERON:0001778!1.88e-12!3;UBERON:0001775!1.88e-12!3;UBERON:0002200!4.01e-12!11;UBERON:0006876!4.01e-12!11;UBERON:0003210!4.08e-12!3;UBERON:0000033!2.39e-11!123;UBERON:0000955!5.95e-11!69;UBERON:0006238!5.95e-11!69;UBERON:0004733!6.82e-11!12;UBERON:0002028!6.82e-11!12;UBERON:0007277!6.82e-11!12;UBERON:0001049!7.61e-11!57;UBERON:0005068!7.61e-11!57;UBERON:0006241!7.61e-11!57;UBERON:0007135!7.61e-11!57;UBERON:0000153!1.41e-10!129;UBERON:0007811!1.41e-10!129;UBERON:0002680!1.65e-10!9;UBERON:0001895!1.65e-10!9;UBERON:0010092!1.65e-10!9;UBERON:0002203!1.82e-10!6;UBERON:0001768!1.82e-10!6;UBERON:0002616!1.93e-10!59;UBERON:0004732!5.26e-10!13;UBERON:0010077!1.35e-09!4;UBERON:0005389!1.35e-09!4;UBERON:0000484!1.35e-09!4;UBERON:0002546!1.35e-09!4;UBERON:0000965!1.35e-09!4;UBERON:0001803!1.35e-09!4;UBERON:0003073!1.35e-09!4;UBERON:0005426!1.35e-09!4;UBERON:0000019!3.77e-09!19;UBERON:0000047!3.77e-09!19;UBERON:0004088!3.77e-09!19;UBERON:0003072!3.77e-09!19;UBERON:0003071!3.77e-09!19;UBERON:0004128!3.77e-09!19;UBERON:0003056!1.17e-08!61;UBERON:0000970!1.21e-08!20;UBERON:0002104!3.49e-08!21;UBERON:0001456!3.49e-08!21;UBERON:0000473!4.22e-08!8;UBERON:0000020!2.19e-07!23;UBERON:0005085!2.48e-07!29;UBERON:0001032!4.89e-07!24;UBERON:0004456!4.89e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.13e-10;8!UBERON:0010077;3.38e-10;4!UBERON:0005389;3.38e-10;4!UBERON:0000484;3.38e-10;4!UBERON:0000965;3.38e-10;4!UBERON:0001803;3.38e-10;4!UBERON:0007625;5.08e-08;11!UBERON:0003135;6.70e-08;11!UBERON:0000991;3.89e-07;21!UBERON:0002037;7.75e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.31e-10,8;UBERON:0010077,3.16e-10,4;UBERON:0005389,3.16e-10,4;UBERON:0000484,3.16e-10,4;UBERON:0002546,3.16e-10,4;UBERON:0000965,3.16e-10,4;UBERON:0001803,3.16e-10,4;UBERON:0003073,3.16e-10,4;UBERON:0005426,3.16e-10,4;UBERON:0007625,4.40e-08,11;UBERON:0003135,7.47e-08,11;UBERON:0000991,4.18e-07,21;UBERON:0009196,4.18e-07,21;UBERON:0009117,4.18e-07,21;UBERON:0005564,4.18e-07,21;UBERON:0002037,8.47e-07,6;UBERON:0006215,8.47e-07,6;UBERON:0004176,8.69e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10808952269109,0.612002073732759,1.56727360739044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98523116044542,0.443458794925128,0.790513071238134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66493170409425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.92736894711029,3.18071443971565,2.90484857173796,3.00617059544574,3.5324919122588,5.47466038613745,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,2.88662684050547,3.94163376915261,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,1.74384027533312,0.2933531432838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27047312111232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391602314925481,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331737779793674,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44677833618517,0.825236619583403,1.24632101408756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248385611765534,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.7089367678059,0,0.157265941855896,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0.8453114551668,0,0,0,0,0,0,0,0,0,0.143339583151451,0.473314686579554,0,0,0,0,0,0,19.9342951239425,11.472885056188,0.633492505057185,2.44773191380756,1.3360870263278,0.36757959813938,1.25353769646188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@ZIC3 | |||
}} |
Revision as of 07:07, 23 January 2014
Short description: | p5@ZIC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ZIC3_5end |
Coexpression cluster: | C595_teratocarcinoma_HES3GFP_H9_testicular_Wilms_hepatoblastoma_neuroblastoma |
Association with transcript: | 76bp_to_ENST00000370606_5end |
EntrezGene: | ZIC3 |
HGNC: | 12874 |
UniProt: | Q5JY75 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 6.28e-46 | 5 |
neurectodermal cell | 2.95e-13 | 59 |
astrocyte of the cerebellum | 1.00e-12 | 3 |
germ line cell | 4.81e-12 | 7 |
germ cell | 4.81e-12 | 7 |
columnar/cuboidal epithelial cell | 7.40e-12 | 27 |
ectodermal cell | 1.15e-10 | 72 |
neuronal stem cell | 1.66e-10 | 8 |
crystallin accumulating cell | 3.16e-10 | 4 |
vertebrate lens cell | 3.16e-10 | 4 |
lens epithelial cell | 3.16e-10 | 4 |
melanocyte | 6.86e-09 | 10 |
melanoblast | 6.86e-09 | 10 |
neural cell | 4.69e-08 | 25 |
neurecto-epithelial cell | 1.47e-07 | 20 |
migratory neural crest cell | 3.40e-07 | 41 |
neuron | 8.47e-07 | 6 |
neuroblast | 8.47e-07 | 6 |
electrically signaling cell | 8.47e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
testis | 1.31e-10 | 8 |
cuboidal epithelium | 3.16e-10 | 4 |
transparent eye structure | 3.16e-10 | 4 |
simple cuboidal epithelium | 3.16e-10 | 4 |
cranial placode | 3.16e-10 | 4 |
lens of camera-type eye | 3.16e-10 | 4 |
epithelium of lens | 3.16e-10 | 4 |
lens placode | 3.16e-10 | 4 |
lens vesicle | 3.16e-10 | 4 |
pigment epithelium of eye | 4.40e-08 | 11 |
male reproductive organ | 7.47e-08 | 11 |
gonad | 4.18e-07 | 21 |
indifferent external genitalia | 4.18e-07 | 21 |
indifferent gonad | 4.18e-07 | 21 |
gonad primordium | 4.18e-07 | 21 |
cerebellum | 8.47e-07 | 6 |
rhombic lip | 8.47e-07 | 6 |
external genitalia | 8.69e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.38e-14 | 22 |
germ cell cancer | 1.38e-14 | 22 |