FFCP PHASE1:Hg19::chr7:100201692..100201773,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5118 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8738 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=37bp_to_ENST00000487172_5end | |||
|coexpression_cluster_id=C1779 | |||
|description=CAGE_peak_8_at_PCOLCE_5end | |||
|id=chr7:100201692..100201773,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.18e-47!180;CL:0000057!4.32e-21!75;CL:0000183!2.25e-15!59;CL:0000393!3.49e-15!60;CL:0000211!3.49e-15!60;CL:0000680!2.38e-14!57;CL:0000056!2.38e-14!57;CL:0000355!2.38e-14!57;CL:0000187!8.55e-14!54;CL:0000192!1.47e-10!42;CL:0000514!1.47e-10!42;CL:0002620!6.10e-10!23;CL:0000359!7.13e-08!32;CL:0000048!2.65e-07!430;CL:0000499!2.67e-07!27;CL:0000034!6.11e-07!444;CL:0000723!7.35e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.32e-11;23!CL:0000057;1.45e-08;73!CL:0000499;3.37e-08;28!CL:0002320;3.47e-08;188!CL:0000723;4.99e-07;61!CL:0000393;7.03e-07;61!CL:0000211;7.03e-07;61!CL:0002570;9.14e-07;8!CL:0000153;9.71e-07;9!CL:0000447;9.71e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.32e-23,76;CL:0000048,4.58e-16,427;CL:0000723,2.77e-15,433;CL:0000034,1.02e-14,441;CL:0002620,3.83e-11,23;CL:0002320,3.16e-10,361;CL:0000393,6.82e-10,61;CL:0000211,6.82e-10,61;CL:0000187,1.10e-09,55;CL:0000680,1.57e-09,58;CL:0000056,1.57e-09,58;CL:0000355,1.57e-09,58;CL:0000499,3.58e-08,28;CL:0000134,9.03e-08,354;CL:0000219,1.92e-07,386;CL:0000136,3.86e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.06e-17!83;UBERON:0002329!2.06e-17!83;UBERON:0003077!2.06e-17!83;UBERON:0003059!2.06e-17!83;UBERON:0007282!2.06e-17!83;UBERON:0009618!2.06e-17!83;UBERON:0007285!2.06e-17!83;UBERON:0004290!1.66e-15!70;UBERON:0001134!1.80e-14!61;UBERON:0002036!1.80e-14!61;UBERON:0003082!1.80e-14!61;UBERON:0002385!3.25e-14!63;UBERON:0001015!3.25e-14!63;UBERON:0000383!3.25e-14!63;UBERON:0000486!2.99e-13!82;UBERON:0005256!2.24e-11!143;UBERON:0000475!4.26e-10!365;UBERON:0002199!7.31e-09!45;UBERON:0002416!7.31e-09!45;UBERON:0003102!1.09e-08!95;UBERON:0002100!3.49e-08!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;2.78e-09;198!UBERON:0001013;6.66e-09;14!UBERON:0002199;9.36e-08;46!UBERON:0002416;9.36e-08;46!UBERON:0004905;6.54e-07;8!UBERON:0000982;6.54e-07;8!UBERON:0004770;6.54e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,1.06e-11,46;UBERON:0002416,1.06e-11,46;UBERON:0007524,6.37e-11,73;UBERON:0003102,1.44e-10,99;UBERON:0002329,1.55e-10,71;UBERON:0003059,1.55e-10,71;UBERON:0007282,1.55e-10,71;UBERON:0004290,1.55e-10,71;UBERON:0009618,1.55e-10,71;UBERON:0003077,3.07e-10,72;UBERON:0007285,3.07e-10,72;UBERON:0002384,5.69e-10,371;UBERON:0001134,6.08e-10,62;UBERON:0002036,6.08e-10,62;UBERON:0003082,6.08e-10,62;UBERON:0000486,9.36e-10,83;UBERON:0002385,2.49e-09,64;UBERON:0001015,2.49e-09,64;UBERON:0000383,2.49e-09,64;UBERON:0007503,2.62e-09,78;UBERON:0001013,9.52e-09,14;UBERON:0002097,2.66e-08,41;UBERON:0003104,3.24e-08,160;UBERON:0009142,3.24e-08,160;UBERON:0005256,2.08e-07,122;UBERON:0004905,3.82e-07,8;UBERON:0000982,3.82e-07,8;UBERON:0004770,3.82e-07,8 | |||
|phase1_expression=1.45342703416445,1.71280419112787,1.9733616573436,3.00219895059391,1.78784437770915,4.36169262050184,7.59899634504932,13.2661173419635,7.83556884599516,0,0.697801167972428,0.436882744260345,0.263766978228454,3.96052329472149,3.64537113300707,0.672325146451775,0.602694528023977,2.19093027116212,0.975865597581014,0.61560529038394,0.816002764977012,2.5076377718247,1.14494394852423,0.684372125364421,0.87879847716362,0.61130724598361,0.164201178899891,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,2.68280343881454,0.383587685530591,5.06014813338393,7.52006865953834,5.5041677205113,7.95285947051099,6.32625331393427,0.472674085820339,0.443458794925128,0.263504357079378,4.12584087817795,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0.367663080345869,0,0,0,0,0,0,0,0,0,0,3.47880366186723,2.91250176828533,0.662045904066094,22.6600930391563,7.4480360261655,0.560677600142307,0,1.48000529050296,2.48968828319813,0.538842688278752,1.14423332179421,2.11900398702904,3.45705554687999,0.234321431833797,3.74592092196385,0.570471821544449,2.98897361103602,0.939475989150119,0.647491777472526,1.12360645361799,1.02077085627447,1.47401180774122,4.23635702820638,15.4440371446667,12.6106133932064,0.910161361938026,7.90479955997862,0.168336113954066,1.87677779807946,0.277064115484183,3.5118209670467,2.45190236639216,7.06118876861005,0.453728732640084,1.97328599257748,4.91181994282705,2.11931901159562,1.20036438433761,3.09157587715317,1.54584324027377,3.53622027030021,2.36286865137773,2.43592512902997,1.00973509697646,3.58994604704967,6.7891343863901,3.90510551768276,1.10827308050404,1.01736355386293,0,0,0,0.609868530647977,0.265059536642971,0.69716365721711,0.621966330092223,1.26160425437814,1.09493207722749,0,9.64861407289328,0,3.71494342425583,4.33127689001751,0,0,0,0,0,0,0.134831308160164,0.196221465125346,0,0,0,1.2347220339942,5.88034845542168,0,0,0.590789906681404,0,0.245976877086227,0,0.109750285408626,0,0.100528972411631,0.185176890317059,0.651616610620649,3.11980435583874,0,0,0.352226082707465,0.288732895522148,0,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0.0895585227028483,0.581267877027924,0,0,0.264145302039678,0.621984346622316,0.144119953416961,0.6312121671319,0.190493682876507,0.381988425558278,0,5.13217338068116,0.205654985406647,0.300343057843917,0.285826432630578,0.672786506072164,0.87192013766656,0.5867062865676,0.904902010304444,28.6125156681506,3.381211010224,6.38251479803689,10.4007436911366,1.54324424557285,0,1.0656887160644,0.428933980974443,6.51145926469732,0,0.325736184293735,0.355391948742546,1.58390374586686,0,0,0.199945982364114,0,0,0,0.239624855491583,2.29723871668228,0,0.579125226670317,2.26023954805422,0.537182889719687,0.112085143993527,0.197030760201927,0,0,1.77866236955724,0,0.773288812777695,1.00509759200609,0.637938751653163,0,0,0,4.66227668532732,8.50289885801451,1.89885516589815,2.49565033836969,2.85486382075459,2.36553622550902,1.63997980989798,12.6397361885642,36.3852006489576,12.4167685551006,0.664225598535437,1.47495334833363,3.73599542212756,6.46143819627044,12.01001983338,0,0,0,0.909382714338778,0,0.907170879989041,1.24053903909388,0.767309866440312,3.08726103876381,1.02511319404561,1.53512174720011,0.804269605718038,0,1.07946785661859,8.34540108971697,3.44934055257998,7.78881643775432,3.48631135379878,0.120859449591622,0,0,1.14814448164607,3.64182336013434,9.70320670699738,0,0.0770153371044148,1.56869953835371,0,0,0,0.170093705276516,0.215915916102139,0,0.812839312631559,2.00675909541941,0.509752546090077,0,0.223874754722178,0,0,0.256450125116389,0,0.325378394664303,0.412164046590889,0.824125183365091,0.495056999523528,0,0,4.82051789532479,2.41676795730305,1.54048617114644,1.38153307253517,1.37836572484531,2.47066563197029,3.19036726611303,0.852266274161009,2.49289699810865,0.165284915360978,0,0,0,0.929691098594572,13.5369309137175,1.3940745403212,1.84820148105653,1.06461206063404,0,2.96518750566272,0.858749320451947,1.86079184679834,0.949138274156178,0.953150969619124,2.04718233049067,1.71175595213568,4.13664222303718,5.49464048139461,1.2591072030832,0.54907405947211,1.53156123049392,0.808729926293264,1.58510321173008,1.68503382495592,0,0.974853958525138,2.11300293513511,2.72999822815972,6.50464986987079,2.26016233240486,2.2054613741845,0.66343897524122,0,3.47265320560013,4.59126326432643,0.405820753925408,0.30982349809975,0.845086807596724,0.573645408816206,0.491245205065606,0.7133421029625,1.41904425628239,10.5553817648832,10.208141681757,1.13841952129715,2.79947776195986,0.0962221127255121,0,1.08890984861323,0.188287601553558,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0.2427210434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| |||
|short_description=p8@PCOLCE | |||
}} |
Revision as of 18:19, 22 January 2014
Short description: | p8@PCOLCE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_PCOLCE_5end |
Coexpression cluster: | C1779_Osteoblast_Fibroblast_Mesenchymal_Smooth_normal_Pericytes_Nucleus |
Association with transcript: | 37bp_to_ENST00000487172_5end |
EntrezGene: | PCOLCE |
HGNC: | 8738 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.32e-23 | 76 |
multi fate stem cell | 4.58e-16 | 427 |
somatic stem cell | 2.77e-15 | 433 |
stem cell | 1.02e-14 | 441 |
skin fibroblast | 3.83e-11 | 23 |
connective tissue cell | 3.16e-10 | 361 |
electrically responsive cell | 6.82e-10 | 61 |
electrically active cell | 6.82e-10 | 61 |
muscle cell | 1.10e-09 | 55 |
muscle precursor cell | 1.57e-09 | 58 |
myoblast | 1.57e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.57e-09 | 58 |
stromal cell | 3.58e-08 | 28 |
mesenchymal cell | 9.03e-08 | 354 |
motile cell | 1.92e-07 | 386 |
fat cell | 3.86e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
integument | 1.06e-11 | 46 |
integumental system | 1.06e-11 | 46 |
dense mesenchyme tissue | 6.37e-11 | 73 |
surface structure | 1.44e-10 | 99 |
somite | 1.55e-10 | 71 |
presomitic mesoderm | 1.55e-10 | 71 |
presumptive segmental plate | 1.55e-10 | 71 |
dermomyotome | 1.55e-10 | 71 |
trunk paraxial mesoderm | 1.55e-10 | 71 |
paraxial mesoderm | 3.07e-10 | 72 |
presumptive paraxial mesoderm | 3.07e-10 | 72 |
connective tissue | 5.69e-10 | 371 |
skeletal muscle tissue | 6.08e-10 | 62 |
striated muscle tissue | 6.08e-10 | 62 |
myotome | 6.08e-10 | 62 |
multilaminar epithelium | 9.36e-10 | 83 |
muscle tissue | 2.49e-09 | 64 |
musculature | 2.49e-09 | 64 |
musculature of body | 2.49e-09 | 64 |
epithelial vesicle | 2.62e-09 | 78 |
adipose tissue | 9.52e-09 | 14 |
skin of body | 2.66e-08 | 41 |
mesenchyme | 3.24e-08 | 160 |
entire embryonic mesenchyme | 3.24e-08 | 160 |
trunk mesenchyme | 2.08e-07 | 122 |
articulation | 3.82e-07 | 8 |
skeletal joint | 3.82e-07 | 8 |
articular system | 3.82e-07 | 8 |