FFCP PHASE1:Hg19::chr6:129811829..129811874,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3908 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6482 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=1bp_to_ENST00000498257_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_3_at_LAMA2_5end | |||
|id=chr6:129811829..129811874,+ | |||
|ontology_enrichment_celltype=CL:0000012!1.11e-31!682;CL:0000548!6.25e-31!679;CL:0000004!6.25e-31!679;CL:0000255!6.25e-31!679;CL:0000063!3.21e-27!578;CL:0002057!5.07e-27!42;CL:0000860!1.50e-26!45;CL:0000003!6.08e-25!722;CL:0000144!7.30e-25!625;CL:0002371!2.98e-23!591;CL:0000557!7.27e-22!71;CL:0000766!1.08e-21!76;CL:0002009!5.71e-20!65;CL:0002194!8.58e-20!63;CL:0000576!8.58e-20!63;CL:0000040!8.58e-20!63;CL:0000559!8.58e-20!63;CL:0000839!1.04e-19!70;CL:0000738!1.06e-16!140;CL:0002031!1.75e-15!124;CL:0002087!4.36e-15!119;CL:0000723!1.31e-12!436;CL:0000048!1.98e-12!430;CL:0000134!4.04e-12!358;CL:0000034!5.47e-12!444;CL:0000763!6.44e-12!112;CL:0000049!6.44e-12!112;CL:0000037!1.35e-11!172;CL:0000566!1.35e-11!172;CL:0000219!2.30e-11!390;CL:0002320!2.80e-11!365;CL:0002032!1.35e-10!165;CL:0000837!1.35e-10!165;CL:0000988!2.35e-10!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.21e-27;33!CL:0002057;2.21e-27;33!CL:0000576;1.80e-20;48!CL:0000473;1.63e-18;39!CL:0000234;1.63e-18;39!CL:0000766;5.74e-14;69!CL:0002393;6.37e-07;6!CL:0002397;6.37e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.50e-37,42;CL:0002057,7.50e-37,42;CL:0000473,8.06e-31,48;CL:0000234,8.06e-31,48;CL:0000766,1.94e-27,72;CL:0000557,6.16e-26,67;CL:0002194,7.15e-25,59;CL:0000576,7.15e-25,59;CL:0000040,7.15e-25,59;CL:0000559,7.15e-25,59;CL:0002009,7.72e-25,61;CL:0000839,3.00e-24,66;CL:0000738,1.54e-17,136;CL:0002031,3.44e-16,120;CL:0002087,5.08e-16,115;CL:0000763,8.16e-15,108;CL:0000049,8.16e-15,108;CL:0000037,5.33e-12,168;CL:0002032,1.62e-11,161;CL:0000837,1.62e-11,161;CL:0000988,1.21e-10,177;CL:0002393,2.43e-08,9;CL:0002397,2.43e-08,9;CL:0000134,6.88e-08,354;CL:0002320,1.23e-07,361;CL:0000219,1.43e-07,386;CL:0000723,6.35e-07,433;CL:0000048,7.24e-07,427;CL:0000034,9.88e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.11e-26;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1749;7.42e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,6.22e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002371!8.88e-21!80;UBERON:0001474!5.74e-19!86;UBERON:0004765!4.71e-16!101;UBERON:0001434!4.71e-16!101;UBERON:0002390!5.27e-14!102;UBERON:0003061!5.27e-14!102;UBERON:0002193!5.70e-13!112;UBERON:0002384!3.72e-11!375;UBERON:0002405!4.94e-11!115;UBERON:0002204!1.29e-10!167;UBERON:0003081!5.57e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.92e-24,76;UBERON:0001474,2.21e-21,82;UBERON:0004765,1.25e-20,90;UBERON:0002405,1.18e-17,93;UBERON:0001434,5.02e-17,100;UBERON:0002390,1.41e-15,98;UBERON:0003061,1.41e-15,98;UBERON:0002193,7.76e-14,108;UBERON:0002204,2.55e-10,167;UBERON:0003081,1.56e-08,203;UBERON:0002384,1.48e-07,371 | |||
|phase1_expression=1.09007027562334,0.428201047781966,0.845726424575827,1.0007329835313,0.446961094427288,0.872338524100369,2.53299878168311,0.631719873426831,0.261185628199839,0.737201809504527,2.09340350391728,2.18441372130172,0.527533956456907,1.23766352960047,0,4.03395087871065,1.20538905604795,1.46062018077475,0.487932798790507,1.10808952269109,0.612002073732759,0.313454721478088,0.286235987131057,0.410623275218653,0.251085279189606,0.993374274723366,0.57470412614962,1.18066171970519,23.6018566109342,16.1208347200829,21.6742572642506,1.83884244895785,0.6024118375565,1.47901604066715,0,0,1.17440175733939,57.0615270787834,23.2631559065364,19.3139674937108,0.223915474239924,0.971680998056939,0.515151135268373,2.76256653681173,2.26725566213286,5.33684934613196,8.13501629169896,10.2791972005456,17.0338503992307,20.7138522471948,11.7833925003386,47.7694104374942,47.2301582609167,50.9932900031223,32.502356782642,6.58848188399116,9.00590295190891,15.5059204267108,71.6236308147912,73.4927472004254,51.7863071897223,5.93732340336089,6.58230070151385,6.81959600852311,37.4369917830873,20.9932533135722,20.553134216854,21.6073852120799,14.6015217157656,36.0533482210494,14.5295880632009,52.2954243102342,64.5583270379404,7.6051903072299,11.4806321981124,12.7891773760109,5.95341745076424,4.50530678524519,4.33959084082116,1.42506371870624,2.78483348078726,4.38393969035121,1.75996244461323,1.09227722252426,2.66852776159066,4.26730222566507,2.00197993518006,1.14950487990897,0.661044872784862,0,0.569212969109448,1.76171156811282,1.91136614062614,1.32171328579026,4.48406850385229,0,0.786839080455332,0.786021525498329,0.822405995998037,0.501559486172034,1.30368906653436,0,0,0.557052284425868,0.883817722424512,0.664601683750863,0.812411591295047,0.25618263945135,0.780356085359269,0.328875809207352,0.552700035571697,0.869409257205157,0.741432815810302,0.267540828089713,0,0.453237370790265,0,1.03088233644789,0.506039384039006,0.637130828648193,1.95325036156926,0,2.86092726247768,1.79181255616186,0,0.710331756132051,0.821127996921047,1.41124720257313,0,0.144824403882799,7.31420598941885,0.670700859703636,0.511450247374121,0,1.50401373190767,0.434539556882471,0,0.486634870302636,1.89069634328136,0.886917589850256,0.966182642624386,0.589405839739707,0.728590576585084,0.370784442784429,0.649094787309367,0.174129737299267,0.132957960518865,2.8618874916641,0.571994910780128,1.11437250398869,1.59009925893364,0,0,0,0.838998872419812,0.275118041940067,1.25396979922086,1.03366703667732,1.42306505074684,0.33472061276467,0.402829317109147,0,0.24406205754817,1.10298924103761,0,0.803697554556718,0.22452937262617,0.112611480483322,1.53316637465883,1.89853131913626,0.549605231791222,3.9534125230819,7.75560528296651,0.436094052142534,2.48485975847659,1.01304409331664,5.56118559415519,2.86836620748814,0.709336764396714,0,0,0,0.933633106199299,1.48181739276657,0.817309515567294,0.756787138224657,0,2.10889288650417,0.312160076830321,0.570471821544449,0.149448680551801,1.87895197830024,0.323745888736263,1.40450806702248,0.816616685019573,0.982674538494144,0.723280468230358,1.18800285728205,0.247266929278557,0,0.718618141816238,1.68336113954066,0.750711119231785,0.277064115484183,0.877955241761676,0,0.300476117813194,0.453728732640084,4.30535125653269,1.70845911054854,1.48352330811693,0.900273288253207,0.618315175430633,2.06112432036503,0.930584281657949,1.0126579934476,0.779496041289589,3.28163906517349,1.28869858099219,0.484938170456436,1.06502877754984,0.604512589365842,1.3564847384839,1.15956511897978,1.09098448236334,1.14721838155602,0.121973706129595,0,0,0.414644220061482,0.252320850875628,0,3.12899064659632,0,1.38134921352481,0.928735856063958,1.44375896333917,0.473227200159376,0.842923450390509,0.241011029883482,0.55146986366197,0.435758888184812,0.474541238222193,0.539325232640658,1.76599318612811,0.769494313892781,0.738155454624648,0,1.6462960453256,0,0,0,0,0.882926198829301,0.737930631258681,1.02940686179115,0.98775256867763,4.49607013030478,0.703702806881416,1.85176890317059,0.325808305310325,1.03993478527958,0,0.695582429850461,0.587043471179108,0.866198686566443,0.462985512576611,1.33177906564219,0,0,0.246217006087397,0.468008530278475,0.445893486866185,0,1.6798212819886,1.41775097242386,4.03013352162817,3.19697332365358,0.383382679165211,0.985326475791887,0.880484340132261,4.97587477297853,8.64719720501769,11.7405463086533,0.825472625798197,1.14596527667483,5.86087236050235,1.71072446022705,0.514137463516618,0.300343057843917,0,0.897048674762886,0,0.8800594298514,1.03417372606222,0,0,1.06375246633948,0,1.80045161983499,0,0,0.428933980974443,0.542621605391443,0,0,0,0.791951872933429,0.904318131178758,1.74306691720059,0.199945982364114,1.2162378064119,0.502257091432126,0,0.718874566474748,2.29723871668228,0,1.01346914667305,1.64381058040307,0.537182889719687,0.336255431980582,2.95546140302891,2.15627574859517,2.43851768931522,0.76228387266739,0,0,0.502548796003046,0.637938751653163,0,0,0,1.47229790062968,0,0.271265023699736,0.83188344612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| |||
|short_description=p3@LAMA2 | |||
}} |
Revision as of 13:50, 22 January 2014
Short description: | p3@LAMA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LAMA2_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 1bp_to_ENST00000498257_5end |
EntrezGene: | LAMA2 |
HGNC: | 6482 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.50e-37 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.50e-37 | 42 |
defensive cell | 8.06e-31 | 48 |
phagocyte | 8.06e-31 | 48 |
myeloid leukocyte | 1.94e-27 | 72 |
granulocyte monocyte progenitor cell | 6.16e-26 | 67 |
monopoietic cell | 7.15e-25 | 59 |
monocyte | 7.15e-25 | 59 |
monoblast | 7.15e-25 | 59 |
promonocyte | 7.15e-25 | 59 |
macrophage dendritic cell progenitor | 7.72e-25 | 61 |
myeloid lineage restricted progenitor cell | 3.00e-24 | 66 |
leukocyte | 1.54e-17 | 136 |
hematopoietic lineage restricted progenitor cell | 3.44e-16 | 120 |
nongranular leukocyte | 5.08e-16 | 115 |
myeloid cell | 8.16e-15 | 108 |
common myeloid progenitor | 8.16e-15 | 108 |
hematopoietic stem cell | 5.33e-12 | 168 |
hematopoietic oligopotent progenitor cell | 1.62e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.62e-11 | 161 |
hematopoietic cell | 1.21e-10 | 177 |
intermediate monocyte | 2.43e-08 | 9 |
CD14-positive, CD16-positive monocyte | 2.43e-08 | 9 |
mesenchymal cell | 6.88e-08 | 354 |
connective tissue cell | 1.23e-07 | 361 |
motile cell | 1.43e-07 | 386 |
somatic stem cell | 6.35e-07 | 433 |
multi fate stem cell | 7.24e-07 | 427 |
stem cell | 9.88e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.92e-24 | 76 |
bone element | 2.21e-21 | 82 |
skeletal element | 1.25e-20 | 90 |
immune system | 1.18e-17 | 93 |
skeletal system | 5.02e-17 | 100 |
hematopoietic system | 1.41e-15 | 98 |
blood island | 1.41e-15 | 98 |
hemolymphoid system | 7.76e-14 | 108 |
musculoskeletal system | 2.55e-10 | 167 |
lateral plate mesoderm | 1.56e-08 | 203 |
connective tissue | 1.48e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 6.22e-07 | 14 |