FFCP PHASE1:Hg19::chr6:116692102..116692118,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=29940 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21144 | |||
|TSSclassifier=strong | |||
|UniProt=Q9UL01 | |||
|association_with_transcript=0bp_to_ENST00000359564,NM_013352,uc003pwt.2_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_1_at_DSE_5end | |||
|id=chr6:116692102..116692118,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.17e-20!42;CL:0002009!1.21e-18!65;CL:0000766!2.06e-18!76;CL:0002194!9.42e-18!63;CL:0000576!9.42e-18!63;CL:0000040!9.42e-18!63;CL:0000559!9.42e-18!63;CL:0000860!1.19e-16!45;CL:0000557!1.53e-15!71;CL:0000723!1.65e-13!436;CL:0000144!1.77e-13!625;CL:0000839!2.84e-13!70;CL:0000034!2.85e-13!444;CL:0000048!4.21e-13!430;CL:0002371!1.31e-12!591;CL:0000134!1.13e-09!358;CL:0002320!2.61e-09!365;CL:0000012!4.51e-08!682;CL:0000548!6.67e-08!679;CL:0000004!6.67e-08!679;CL:0000255!6.67e-08!679;CL:0000055!2.15e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.83e-19;33!CL:0002057;5.83e-19;33!CL:0000473;4.00e-17;39!CL:0000234;4.00e-17;39!CL:0000576;2.01e-11;48!CL:0000766;2.79e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.06e-22,48;CL:0000234,3.06e-22,48;CL:0002009,2.82e-21,61;CL:0000766,9.76e-21,72;CL:0000860,1.13e-20,42;CL:0002057,1.13e-20,42;CL:0002194,2.36e-20,59;CL:0000576,2.36e-20,59;CL:0000040,2.36e-20,59;CL:0000559,2.36e-20,59;CL:0000557,1.07e-17,67;CL:0000839,3.46e-15,66;CL:0000723,5.95e-15,433;CL:0000034,1.07e-14,441;CL:0000048,1.71e-14,427;CL:0000134,8.71e-11,354;CL:0002320,2.15e-10,361;CL:0000057,8.57e-07,76;CL:0000763,9.68e-07,108;CL:0000049,9.68e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;2.20e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!5.97e-19!167;UBERON:0002371!5.37e-14!80;UBERON:0004765!9.15e-14!101;UBERON:0001434!9.15e-14!101;UBERON:0002390!5.74e-13!102;UBERON:0003061!5.74e-13!102;UBERON:0001474!9.80e-13!86;UBERON:0003081!6.85e-11!216;UBERON:0002193!2.42e-10!112;UBERON:0002384!1.29e-09!375;UBERON:0000926!7.61e-09!448;UBERON:0004120!7.61e-09!448;UBERON:0006603!7.61e-09!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,3.58e-20,167;UBERON:0000926,1.50e-16,315;UBERON:0004120,1.50e-16,315;UBERON:0006603,1.50e-16,315;UBERON:0002371,7.90e-16,76;UBERON:0004765,4.94e-15,90;UBERON:0001434,6.16e-15,100;UBERON:0002390,2.02e-14,98;UBERON:0003061,2.02e-14,98;UBERON:0001474,2.39e-14,82;UBERON:0003081,7.18e-12,203;UBERON:0002193,1.65e-11,108;UBERON:0002384,1.03e-10,371;UBERON:0002405,1.39e-10,93 | |||
|phase1_expression=90.8391896352783,79.2171938396638,115.4416569546,89.0652355342861,92.5209465464486,116.893362229449,32.9289841618804,41.6935116461708,25.857377191784,25.0648615231539,13.2582221914761,26.649847399881,18.7274554542202,26.2384668275299,27.505982185417,83.3683181600201,76.5422050590451,72.3006989483499,78.5571806052716,13.1739532142163,15.7080532258075,13.4785530235578,6.01095572975219,6.70684682857133,11.5499228427219,17.8043235392726,16.8306208372389,16.6866856385,108.961904687146,122.825407391108,153.577594329547,55.1652734687356,60.8435955932065,45.4797432505149,0,0,12.9184193307333,544.577486586836,495.54532969872,297.087882010001,55.9788685599811,30.7698982718031,46.1060266065194,322.493293613075,464.787410737236,425.249859262242,605.94249921312,687.472708772493,585.654747362641,435.278589583414,445.463468654106,511.274581019121,423.002950263831,475.076727117696,455.032994956988,432.957380947991,578.288131972575,567.426798223839,670.323724292277,904.377998300432,606.73093238329,395.491708923873,391.547159911263,492.289586865262,859.019346340609,1117.18150741685,888.767349316685,308.282112270024,417.707817654581,427.86202406908,641.723472791371,1173.70082589237,861.727081001528,54.9263744411049,45.0721115925892,37.1095802549825,46.054738770063,55.1149196728328,62.3615276384671,29.3563126053486,22.4775845234972,21.1890418366975,21.1195493353587,23.4839602842717,30.2433146313609,15.3622880123943,14.4142555332964,22.4153451582248,23.1365705474702,20.989182599778,18.7840279806118,20.5533016279829,17.9668417218858,23.7908391442247,206.267151177205,7.63813845847723,4.72103448273199,66.4188189046088,8.63526295797939,0,0.32592226663359,0,0,0.557052284425868,1.17842362989935,1.32920336750173,0.541607727530031,0.768547918354051,0.390178042679635,0,0,0.289803085735052,0,0.267540828089713,0,0.113309342697566,3.44898444241729,4.81078423675682,1.26509846009751,1.59282707162048,0.651083453856419,0.950452044448374,5.27012916772205,5.11946444617674,3.74792179657038,5.20909954496837,2.46338399076314,12.9028315663829,82.9064606928873,4.34473211648397,104.836952515004,32.8643421254782,33.3721286411614,54.9387511624541,67.1792800252092,75.7547294165108,68.3945914463945,52.5565659926847,12.0059217798366,13.0820344502913,14.7562439964452,13.0979075497713,36.4295288292542,37.0784442784429,97.364218096405,106.393269489852,73.924626048489,44.8362373694043,36.0356793791481,39.7459526422634,7.55297147993479,10.3228151412735,13.8856200643038,22.6123176769604,14.6824802673467,17.3324366422242,9.19577852761967,6.97725249757188,7.1153252537342,6.6944122552934,10.0707329277287,0,6.10155143870424,8.82391392830085,17.012980905517,12.9484606011916,17.9623498100936,14.5268809823486,7.66583187329416,16.1375162126582,14.839341258363,1063.46796870903,1202.11881885981,38.376276588543,106.848969614493,41.6614383376467,63.556406790345,66.8329326344736,36.5308433664308,29.1552352074,85.399196583764,37.9868024562426,44.1919670267668,54.423111516154,30.5673758822168,41.3205777470663,88.1549164454398,8.20125011418288,16.8566441488373,17.6846264678779,18.0832903467679,20.3161682653713,22.8240851559065,26.4047516600227,24.2943463793323,11.1779228753709,19.0119437363408,121.176291442769,122.397129992886,20.0235499626366,31.6191982399145,15.9919308256363,23.2720446961853,28.5376038948708,104.476673769639,120.449703749015,135.815205251563,32.8953331164061,57.4046834204358,109.341383075107,104.694359172824,49.214939757842,100.785373595193,58.2267620503122,102.922621551369,58.9029399522019,84.9650685005652,52.0013574942876,139.547646341726,31.6826271364871,44.0211894720602,36.7745158530887,49.3421323623519,189.395636100031,212.196481819669,203.057653535415,21.711319691068,21.3372926997591,16.9643156589497,15.7564803623363,18.4194221139209,19.7087773900948,115.772653924064,77.8321535213391,44.2031748327938,95.1954252465557,35.3720946018097,4.8505788016336,6.06904884281166,7.95336398615491,5.18381671842252,3.05031221729369,5.45722423955522,3.50561401216427,5.29797955838434,4.23221872641029,7.38155454624648,18.231430594448,23.4597186458898,22.0513067078313,15.2106041786197,10.8110993834539,47.2631925345123,0,0.245976877086227,22.8185187697039,118.420557955907,85.4253324757909,78.5131274534837,123.605574286637,5.53874119027552,14.5590869939141,14.4331342025273,7.30361551342984,40.6234082055943,7.79578817909799,8.7967247389556,3.80508304469197,1.58040879591855,0.858486162094873,95.7784153679976,59.9050918756448,92.7458452681664,115.292615803736,199.562768300245,179.061947817134,106.216407925578,125.553861438032,47.156069537321,24.1404986569012,8.54069809928293,3.31724984865235,7.06187771743111,1.76739406796932,1.33345578013555,2.29193055334967,1.17217447210047,3.4214489204541,3.29047976650635,0,1.14330573052231,17.3803180735309,29.645284680663,23.3949131768831,84.5437021055867,21.4593867511129,49.027559648248,90.9508358720257,39.5228260263191,14.1464055844178,8.5109479213967,15.4524863829338,61.7664932603197,24.9605938480064,38.6922958286961,31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| |||
|short_description=p1@DSE | |||
}} |
Revision as of 13:32, 22 January 2014
Short description: | p1@DSE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DSE_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000359564, NM_013352, uc003pwt.2_5end |
EntrezGene: | DSE |
HGNC: | 21144 |
UniProt: | Q9UL01 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.06e-22 | 48 |
phagocyte | 3.06e-22 | 48 |
macrophage dendritic cell progenitor | 2.82e-21 | 61 |
myeloid leukocyte | 9.76e-21 | 72 |
classical monocyte | 1.13e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.13e-20 | 42 |
monopoietic cell | 2.36e-20 | 59 |
monocyte | 2.36e-20 | 59 |
monoblast | 2.36e-20 | 59 |
promonocyte | 2.36e-20 | 59 |
granulocyte monocyte progenitor cell | 1.07e-17 | 67 |
myeloid lineage restricted progenitor cell | 3.46e-15 | 66 |
somatic stem cell | 5.95e-15 | 433 |
stem cell | 1.07e-14 | 441 |
multi fate stem cell | 1.71e-14 | 427 |
mesenchymal cell | 8.71e-11 | 354 |
connective tissue cell | 2.15e-10 | 361 |
fibroblast | 8.57e-07 | 76 |
myeloid cell | 9.68e-07 | 108 |
common myeloid progenitor | 9.68e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 3.58e-20 | 167 |
mesoderm | 1.50e-16 | 315 |
mesoderm-derived structure | 1.50e-16 | 315 |
presumptive mesoderm | 1.50e-16 | 315 |
bone marrow | 7.90e-16 | 76 |
skeletal element | 4.94e-15 | 90 |
skeletal system | 6.16e-15 | 100 |
hematopoietic system | 2.02e-14 | 98 |
blood island | 2.02e-14 | 98 |
bone element | 2.39e-14 | 82 |
lateral plate mesoderm | 7.18e-12 | 203 |
hemolymphoid system | 1.65e-11 | 108 |
connective tissue | 1.03e-10 | 371 |
immune system | 1.39e-10 | 93 |