FFCP PHASE1:Hg19::chr6:1626471..1626487,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2762 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4369 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-48bp_to_ENST00000486793_5end | |||
|coexpression_cluster_id=C4581 | |||
|description=CAGE_peak_9_at_GMDS_5end | |||
|id=chr6:1626471..1626487,- | |||
|ontology_enrichment_celltype=CL:0000327!1.78e-14!14;CL:0000153!2.58e-12!9;CL:0000447!2.58e-12!9;CL:0000667!3.30e-10!6;CL:0000058!3.30e-10!6;CL:0000138!3.30e-10!6;CL:0000499!1.83e-09!27;CL:0002564!4.50e-07!3;CL:0000708!9.65e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000138;1.14e-27;6!CL:0000153;6.25e-26;9!CL:0000447;6.25e-26;9!CL:0000327;8.77e-21;15!CL:0000499;1.87e-17;28!CL:0002564;2.40e-09;3!CL:0000151;3.54e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,1.21e-27,6;CL:0000138,1.21e-27,6;CL:0000153,8.49e-26,9;CL:0000447,8.49e-26,9;CL:0000327,1.07e-20,15;CL:0000499,2.22e-17,28;CL:0002564,3.24e-09,3;CL:0000151,3.96e-08,36 | |||
|ontology_enrichment_development_v019=UBERON:0006298;2.70e-08;1!UBERON:0008801;3.80e-08;1!UBERON:0010115;4.35e-08;1!UBERON:0000358;6.30e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.35e-14!115;UBERON:0005743!3.15e-11!86;UBERON:0001017!5.88e-11!82;UBERON:0000153!6.31e-10!129;UBERON:0007811!6.31e-10!129;UBERON:0000477!7.49e-10!286;UBERON:0003408!1.22e-09!10;UBERON:0001044!1.28e-09!6;UBERON:0003293!1.28e-09!6;UBERON:0003294!1.28e-09!6;UBERON:0010047!1.28e-09!6;UBERON:0000167!1.28e-09!6;UBERON:0000073!1.63e-09!94;UBERON:0001016!1.63e-09!94;UBERON:0002616!8.83e-09!59;UBERON:0000033!1.36e-08!123;UBERON:0003075!1.57e-08!86;UBERON:0007284!1.57e-08!86;UBERON:0001049!3.60e-08!57;UBERON:0005068!3.60e-08!57;UBERON:0006241!3.60e-08!57;UBERON:0007135!3.60e-08!57;UBERON:0002346!6.96e-08!90;UBERON:0004121!1.45e-07!169;UBERON:0000955!1.60e-07!69;UBERON:0006238!1.60e-07!69;UBERON:0003076!2.19e-07!15;UBERON:0003057!2.19e-07!15;UBERON:0000924!3.42e-07!173;UBERON:0006601!3.42e-07!173;UBERON:0005174!3.54e-07!5;UBERON:0001137!3.54e-07!5;UBERON:0005284!4.11e-07!5;UBERON:0002240!4.22e-07!3;UBERON:0002242!4.50e-07!3;UBERON:0003068!4.50e-07!3;UBERON:0002328!4.50e-07!3;UBERON:0004880!4.50e-07!3;UBERON:0003210!9.65e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001829;9.63e-15;2!UBERON:0002360;5.09e-14;2!UBERON:0000094;5.09e-14;2!UBERON:0010743;5.09e-14;2!UBERON:0001044;6.92e-11;6!UBERON:0003293;6.92e-11;6!UBERON:0003294;6.92e-11;6!UBERON:0010047;6.92e-11;6!UBERON:0003408;6.92e-11;6!UBERON:0000167;6.92e-11;6!UBERON:0002242;2.40e-09;3!UBERON:0001736;2.70e-08;1!UBERON:0001831;3.80e-08;1!UBERON:0001567;3.80e-08;1!UBERON:0002363;4.35e-08;1!UBERON:0004905;1.25e-07;8!UBERON:0000982;1.25e-07;8!UBERON:0004770;1.25e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,1.03e-14,2;UBERON:0002360,3.67e-14,2;UBERON:0000094,3.67e-14,2;UBERON:0010743,3.67e-14,2;UBERON:0001044,7.28e-11,6;UBERON:0003293,7.28e-11,6;UBERON:0003294,7.28e-11,6;UBERON:0010047,7.28e-11,6;UBERON:0000167,7.28e-11,6;UBERON:0002242,3.24e-09,3;UBERON:0003068,3.24e-09,3;UBERON:0002328,3.24e-09,3;UBERON:0004880,3.24e-09,3;UBERON:0001736,2.70e-08,1;UBERON:0006298,2.70e-08,1;UBERON:0001831,4.07e-08,1;UBERON:0001567,4.07e-08,1;UBERON:0008801,4.07e-08,1;UBERON:0002363,4.35e-08,1;UBERON:0007645,4.35e-08,1;UBERON:0007647,4.35e-08,1;UBERON:0010115,4.35e-08,1;UBERON:0004905,1.69e-07,8;UBERON:0000982,1.69e-07,8;UBERON:0004770,1.69e-07,8 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,0,0,0,0,0.866364470720326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,8.52274448081012,9.27017721349272,2.3858578411533,6.32625331393427,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0.605429710579726,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,3.48768055066624,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,2.29723871668228,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.12269149171914,1.00034104211935,1.35632511849868,0,0,0,0,3.00946099727719,0,2.0694614258501,0,0,0,0.979005787313703,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18011973463482,0.451199612907412,0.231046011313244,1.56869953835371,0,0.949964660035881,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0.18532421910392,0,0.744316738719335,0.632758849437452,0,0,0,0,0,0,0,0,0,1.58510321173008,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,1.05553817648832,0.987884678879706,0,0.699869440489966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79323189425963,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.278304294485554,0,0,0,0,0.341380344856499,0,0,0,0,0,0,0,0,0.110579259931225,0,1.75508317723178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,4.61262031287962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.25980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121499113316049,0,0.709251365692784,0.157363764404994,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22021956690538,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0.947015026375446,1.50940741051545,6.22867855117575,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,6.030835435429,0.496211178389294,0,0,1.07140367175657,0,0.606965604236632,0,0,0,0,0.203909198930495,0.0657727735628491,0,0,0.235479278551542,0,0,0,0,0,2.7875852228896,0,0,0,0,0.207216164163037,0,0.691259661814092,9.03477453522583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0.150962843566674,0,0,0,0,0,0.785233868459781,0.297046400327086,0.8453114551668,0,0,0,0,0,0,0,0,10.0920442348999,0.286679166302903,0,0.0679914901909147,0,0,0,1.38652688589425,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0.0645889098360061,0.0620747142958579,0,0.0636471582781649,0,0,0.342233301085281,0.0673520530145875,0.215166616178029,1.99596213927608,0,0,0,0,2.34640942403454,0,0,0,0.603821380773079,0 | |||
|short_description=p9@GMDS | |||
}} |
Revision as of 09:37, 22 January 2014
Short description: | p9@GMDS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_GMDS_5end |
Coexpression cluster: | C4581_Chondrocyte_salivary_submaxillary_parotid_dura_aorta_retina |
Association with transcript: | -48bp_to_ENST00000486793_5end |
EntrezGene: | GMDS |
HGNC: | 4369 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 1.21e-27 | 6 |
chondrocyte | 1.21e-27 | 6 |
GAG secreting cell | 8.49e-26 | 9 |
carbohydrate secreting cell | 8.49e-26 | 9 |
extracellular matrix secreting cell | 1.07e-20 | 15 |
stromal cell | 2.22e-17 | 28 |
nucleus pulposus cell of intervertebral disc | 3.24e-09 | 3 |
secretory cell | 3.96e-08 | 36 |
Ontology term | p-value | n |
---|---|---|
major salivary gland | 1.03e-14 | 2 |
meninx | 3.67e-14 | 2 |
membrane organ | 3.67e-14 | 2 |
meningeal cluster | 3.67e-14 | 2 |
saliva-secreting gland | 7.28e-11 | 6 |
gland of oral region | 7.28e-11 | 6 |
gland of foregut | 7.28e-11 | 6 |
oral gland | 7.28e-11 | 6 |
oral cavity | 7.28e-11 | 6 |
nucleus pulposus | 3.24e-09 | 3 |
axial mesoderm | 3.24e-09 | 3 |
notochord | 3.24e-09 | 3 |
chordamesoderm | 3.24e-09 | 3 |
submandibular gland | 2.70e-08 | 1 |
submandibular gland primordium | 2.70e-08 | 1 |
parotid gland | 4.07e-08 | 1 |
cheek | 4.07e-08 | 1 |
parotid gland primordium | 4.07e-08 | 1 |
dura mater | 4.35e-08 | 1 |
future meninx | 4.35e-08 | 1 |
ectomeninx | 4.35e-08 | 1 |
future dura mater | 4.35e-08 | 1 |
articulation | 1.69e-07 | 8 |
skeletal joint | 1.69e-07 | 8 |
articular system | 1.69e-07 | 8 |