FFCP PHASE1:Hg19::chr5:54281407..54281429,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11082 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3466 | |||
|TSSclassifier=strong | |||
|UniProt=Q3V4E3,Q9NQ30 | |||
|association_with_transcript=0bp_to_ENST00000381403,NM_001135604,NM_007036,uc003jpk.2,uc010ivt.2_5end | |||
|coexpression_cluster_id=C1278 | |||
|description=CAGE_peak_1_at_ESM1_5end | |||
|id=chr5:54281407..54281429,- | |||
|ontology_enrichment_celltype=CL:0000222!5.63e-29!119;CL:0002139!2.66e-19!24;CL:0000115!9.94e-18!35;CL:0000055!1.85e-17!180;CL:0000359!1.36e-16!32;CL:0000680!7.59e-16!57;CL:0000056!7.59e-16!57;CL:0000355!7.59e-16!57;CL:0000071!6.32e-15!18;CL:0002546!6.32e-15!18;CL:0000213!2.31e-14!57;CL:0000215!2.31e-14!57;CL:0000187!2.36e-14!54;CL:0000183!9.42e-14!59;CL:0002078!1.06e-13!44;CL:0000192!5.62e-13!42;CL:0000514!5.62e-13!42;CL:0000393!9.09e-12!60;CL:0000211!9.09e-12!60;CL:1000413!1.60e-08!9;CL:0000057!4.57e-08!75;CL:0002539!5.90e-08!10;CL:0000220!5.24e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002139;8.70e-26;24!CL:0000115;7.47e-21;36!CL:0000071;8.34e-20;18!CL:0000359;5.89e-19;32!CL:0002078;1.80e-13;45!CL:0000213;3.94e-11;58!CL:0000215;3.94e-11;58!CL:1000413;4.62e-11;9!CL:0000192;1.75e-10;43!CL:0002539;2.69e-10;10!CL:0002544;8.00e-08;6!CL:0002543;1.44e-07;6!CL:0002138;1.58e-07;6!CL:0000187;3.72e-07;55!CL:0002595;6.47e-07;5!CL:0002494;7.87e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.17e-32,121;CL:0002139,8.86e-26,24;CL:0000115,9.30e-25,36;CL:0000359,6.05e-20,32;CL:0002078,7.25e-20,45;CL:0000071,8.50e-20,18;CL:0002546,8.50e-20,18;CL:0000213,1.18e-18,58;CL:0000215,1.18e-18,58;CL:0000680,3.48e-15,58;CL:0000056,3.48e-15,58;CL:0000355,3.48e-15,58;CL:0000192,2.20e-13,43;CL:0000514,2.20e-13,43;CL:0000187,2.29e-13,55;CL:1000413,4.65e-11,9;CL:0000393,6.55e-11,61;CL:0000211,6.55e-11,61;CL:0002539,2.74e-10,10;CL:0002321,3.70e-09,250;CL:0002544,7.99e-08,6;CL:0002543,1.45e-07,6;CL:0005020,1.58e-07,6;CL:0002138,1.58e-07,6;CL:0005022,1.58e-07,6;CL:0002595,6.54e-07,5;CL:0002494,7.76e-07,16 | |||
|ontology_enrichment_development_v019=CL:0002546;8.34e-20;18!CL:0000514;1.75e-10;43!CL:0000222;1.40e-08;121!CL:0000355;7.30e-08;58!CL:0005022;1.58e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;4.30e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.45e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000055!1.91e-36!69;UBERON:0002049!3.22e-35!79;UBERON:0007798!3.22e-35!79;UBERON:0001981!4.38e-35!60;UBERON:0007500!4.38e-35!60;UBERON:0004537!4.38e-35!60;UBERON:0006965!4.38e-35!60;UBERON:0004872!1.03e-34!84;UBERON:0001009!3.34e-31!113;UBERON:0004535!5.07e-31!110;UBERON:0001637!6.27e-29!42;UBERON:0003509!6.27e-29!42;UBERON:0004572!6.27e-29!42;UBERON:0003914!6.84e-26!118;UBERON:0004573!2.82e-23!33;UBERON:0004571!2.82e-23!33;UBERON:0000490!3.20e-20!138;UBERON:0000477!6.57e-20!286;UBERON:0004111!7.48e-19!241;UBERON:0000025!3.20e-16!194;UBERON:0001134!4.72e-16!61;UBERON:0002036!4.72e-16!61;UBERON:0003082!4.72e-16!61;UBERON:0002385!1.01e-15!63;UBERON:0001015!1.01e-15!63;UBERON:0000383!1.01e-15!63;UBERON:0000119!1.30e-15!312;UBERON:0001986!6.32e-15!18;UBERON:0004638!6.32e-15!18;UBERON:0004852!6.32e-15!18;UBERON:0000483!1.20e-14!309;UBERON:0000947!1.71e-14!21;UBERON:0010191!1.71e-14!21;UBERON:0000914!2.85e-14!83;UBERON:0002329!2.85e-14!83;UBERON:0003077!2.85e-14!83;UBERON:0003059!2.85e-14!83;UBERON:0007282!2.85e-14!83;UBERON:0009618!2.85e-14!83;UBERON:0007285!2.85e-14!83;UBERON:0004290!5.90e-14!70;UBERON:0000487!2.14e-13!22;UBERON:0006914!2.82e-13!25;UBERON:0000486!3.66e-12!82;UBERON:0005256!2.05e-11!143;UBERON:0002100!6.54e-09!216;UBERON:0003915!1.60e-08!9;UBERON:0004700!1.60e-08!9;UBERON:0001917!1.60e-08!9;UBERON:0000475!3.75e-08!365;UBERON:0004237!5.90e-08!10;UBERON:0004695!5.90e-08!10;UBERON:0002111!5.90e-08!10;UBERON:0004178!5.90e-08!10;UBERON:0000481!1.01e-07!347;UBERON:0000467!1.78e-07!625;UBERON:0000480!2.40e-07!626;UBERON:0007100!2.86e-07!27;UBERON:0000948!3.72e-07!24;UBERON:0005498!3.72e-07!24;UBERON:0004140!3.72e-07!24;UBERON:0009881!3.72e-07!24;UBERON:0004141!3.72e-07!24;UBERON:0003084!3.72e-07!24;UBERON:0007005!3.72e-07!24;UBERON:0004139!3.72e-07!24;UBERON:0004291!3.72e-07!24;UBERON:0003104!4.36e-07!238;UBERON:0009142!4.36e-07!238;UBERON:0000468!5.93e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.67e-28;33!UBERON:0004571;1.67e-28;33!UBERON:0001637;2.43e-28;42!UBERON:0003509;2.43e-28;42!UBERON:0004572;2.43e-28;42!UBERON:0007500;1.15e-24;56!UBERON:0001981;1.15e-24;56!UBERON:0004537;1.15e-24;56!UBERON:0000055;1.72e-23;65!UBERON:0004638;8.34e-20;18!UBERON:0001986;8.34e-20;18!UBERON:0004852;8.34e-20;18!UBERON:0000947;3.10e-19;21!UBERON:0010191;3.10e-19;21!UBERON:0006914;1.89e-18;25!UBERON:0000487;2.28e-18;22!UBERON:0002049;2.40e-17;75!UBERON:0007798;2.40e-17;75!UBERON:0003914;2.30e-16;74!UBERON:0003915;4.62e-11;9!UBERON:0004700;4.62e-11;9!UBERON:0001917;4.62e-11;9!UBERON:0000025;5.99e-11;93!UBERON:0000490;7.37e-11;33!UBERON:0004535;1.90e-10;109!UBERON:0004237;2.69e-10;10!UBERON:0004695;2.69e-10;10!UBERON:0002111;2.69e-10;10!UBERON:0004178;2.69e-10;10!UBERON:0001009;9.37e-09;112!UBERON:0003513;7.91e-08;7!UBERON:0002385;2.42e-07;31!UBERON:0001015;2.42e-07;31!UBERON:0000383;2.42e-07;31!UBERON:0003834;6.47e-07;5!UBERON:0001533;6.47e-07;5!UBERON:0001135;9.12e-07;15 | |||
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| |||
|short_description=p1@ESM1 | |||
}} |
Revision as of 05:25, 22 January 2014
Short description: | p1@ESM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ESM1_5end |
Coexpression cluster: | C1278_Smooth_Endothelial_osteosarcoma_schwannoma_large_Renal_Lymphatic |
Association with transcript: | 0bp_to_ENST00000381403, NM_001135604, NM_007036, uc003jpk.2, uc010ivt.2_5end |
EntrezGene: | ESM1 |
HGNC: | 3466 |
UniProt: | Q3V4E3Q9NQ30 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.17e-32 | 121 |
endothelial cell of vascular tree | 8.86e-26 | 24 |
endothelial cell | 9.30e-25 | 36 |
vascular associated smooth muscle cell | 6.05e-20 | 32 |
meso-epithelial cell | 7.25e-20 | 45 |
blood vessel endothelial cell | 8.50e-20 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.50e-20 | 18 |
lining cell | 1.18e-18 | 58 |
barrier cell | 1.18e-18 | 58 |
muscle precursor cell | 3.48e-15 | 58 |
myoblast | 3.48e-15 | 58 |
multi-potent skeletal muscle stem cell | 3.48e-15 | 58 |
smooth muscle cell | 2.20e-13 | 43 |
smooth muscle myoblast | 2.20e-13 | 43 |
muscle cell | 2.29e-13 | 55 |
endothelial cell of artery | 4.65e-11 | 9 |
electrically responsive cell | 6.55e-11 | 61 |
electrically active cell | 6.55e-11 | 61 |
aortic smooth muscle cell | 2.74e-10 | 10 |
embryonic cell | 3.70e-09 | 250 |
aortic endothelial cell | 7.99e-08 | 6 |
vein endothelial cell | 1.45e-07 | 6 |
lymphangioblast | 1.58e-07 | 6 |
endothelial cell of lymphatic vessel | 1.58e-07 | 6 |
vascular lymphangioblast | 1.58e-07 | 6 |
smooth muscle cell of the subclavian artery | 6.54e-07 | 5 |
cardiocyte | 7.76e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.45e-07 | 14 |