FFCP PHASE1:Hg19::chr3:181430496..181430506,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6657 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11195 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=348bp_to_AB464715,EU446654_5end | |||
|description=CAGE_peak_6_at_SOX2_5end | |||
|id=chr3:181430496..181430506,+ | |||
|ontology_enrichment_celltype=CL:0000242!3.57e-08!2;CL:0002319!7.32e-07!25 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0010122;5.04e-34;2 | |||
|ontology_enrichment_disease=DOID:3095!1.82e-11!22;DOID:2994!1.82e-11!22 | |||
|ontology_enrichment_disease_v019=DOID:4362;1.60e-14;5 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,1.83e-14,5 | |||
|ontology_enrichment_uberon=UBERON:0001869!1.58e-17!32;UBERON:0001893!2.44e-16!34;UBERON:0002780!3.58e-15!41;UBERON:0001890!3.58e-15!41;UBERON:0006240!3.58e-15!41;UBERON:0001049!4.37e-15!57;UBERON:0005068!4.37e-15!57;UBERON:0006241!4.37e-15!57;UBERON:0007135!4.37e-15!57;UBERON:0003080!9.76e-15!42;UBERON:0002346!1.63e-14!90;UBERON:0002616!1.94e-14!59;UBERON:0002791!2.20e-14!33;UBERON:0002020!6.87e-14!34;UBERON:0003528!6.87e-14!34;UBERON:0001017!5.27e-13!82;UBERON:0000955!5.35e-13!69;UBERON:0006238!5.35e-13!69;UBERON:0005743!3.48e-12!86;UBERON:0000073!7.99e-12!94;UBERON:0001016!7.99e-12!94;UBERON:0001950!1.04e-11!20;UBERON:0000956!2.89e-11!25;UBERON:0000203!2.89e-11!25;UBERON:0003075!3.53e-11!86;UBERON:0007284!3.53e-11!86;UBERON:0001871!6.59e-11!7;UBERON:0003056!1.31e-10!61;UBERON:0002619!1.51e-10!22;UBERON:0000924!2.14e-10!173;UBERON:0006601!2.14e-10!173;UBERON:0000200!1.84e-09!6;UBERON:0001873!9.95e-09!2;UBERON:0010122!9.95e-09!2;UBERON:0004121!3.73e-08!169;UBERON:0000033!3.49e-07!123;UBERON:0002420!1.00e-06!9;UBERON:0007245!1.00e-06!9;UBERON:0010009!1.00e-06!9;UBERON:0010011!1.00e-06!9;UBERON:0000454!1.00e-06!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001873;5.04e-34;2!UBERON:0005383;3.27e-23;3!UBERON:0005382;3.27e-23;3!UBERON:0000369;8.69e-18;4!UBERON:0002435;8.69e-18;4!UBERON:0000204;8.69e-18;4!UBERON:0000945;1.60e-14;5!UBERON:0010039;1.60e-14;5!UBERON:0000002;2.45e-12;6!UBERON:0001560;2.45e-12;6!UBERON:0009663;8.99e-11;7!UBERON:0002420;1.12e-08;9!UBERON:0000125;1.12e-08;9!UBERON:0007245;1.12e-08;9!UBERON:0002308;1.12e-08;9!UBERON:0010009;1.12e-08;9!UBERON:0010011;1.12e-08;9!UBERON:0000454;1.12e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001873,5.04e-34,2;UBERON:0010122,5.04e-34,2;UBERON:0005383,3.27e-23,3;UBERON:0005382,3.27e-23,3;UBERON:0000369,8.69e-18,4;UBERON:0002435,8.69e-18,4;UBERON:0000204,8.69e-18,4;UBERON:0010082,8.69e-18,4;UBERON:0000002,2.74e-12,6;UBERON:0001560,2.74e-12,6;UBERON:0009663,8.99e-11,7;UBERON:0000945,1.24e-09,8;UBERON:0010039,1.24e-09,8;UBERON:0002420,1.12e-08,9;UBERON:0000125,1.12e-08,9;UBERON:0007245,1.12e-08,9;UBERON:0002308,1.12e-08,9;UBERON:0010009,1.12e-08,9;UBERON:0010011,1.12e-08,9;UBERON:0000454,1.12e-08,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0.414644220061482,0,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606802608747567,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0,0.291604613383254,0,1.77148277162768,0.361789315876224,0,0,0,0,0,0.278847488557207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.91821828489147,0,0.300646838828985,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,1.83258553865465,0.171594997861965,0.14405479798815,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0.573409195690071,0,0,0,0.124980407962107,0,0,0,0.468334905806882,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0.169732529954025,0.212574920101683,0.123935764259002,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0.207471757392654,0,0,0,0.235939446695481,0,0,0,0,0,0,0,0,0,0,0,0.337687923091973,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131545547125698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0,1.40363678077263,0,0,0.5647304101948,0,0.301925687133347,0,0,0.470317296361523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0.126166424835079,0.764859003745869,0,0,0.26721740526556,0.36757959813938,0.50141507858475,0,0,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p6@SOX2 | |||
}} |
Revision as of 22:49, 21 January 2014
Short description: | p6@SOX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SOX2_5end |
Coexpression cluster: | NA |
Association with transcript: | 348bp_to_AB464715, EU446654_5end |
EntrezGene: | SOX2 |
HGNC: | 11195 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
caudate nucleus | 5.04e-34 | 2 |
future caudate nucleus | 5.04e-34 | 2 |
caudate-putamen | 3.27e-23 | 3 |
dorsal striatum | 3.27e-23 | 3 |
corpus striatum | 8.69e-18 | 4 |
striatum | 8.69e-18 | 4 |
ventral part of telencephalon | 8.69e-18 | 4 |
future corpus striatum | 8.69e-18 | 4 |
uterine cervix | 2.74e-12 | 6 |
neck of organ | 2.74e-12 | 6 |
telencephalic nucleus | 8.99e-11 | 7 |
stomach | 1.24e-09 | 8 |
food storage organ | 1.24e-09 | 8 |
basal ganglion | 1.12e-08 | 9 |
neural nucleus | 1.12e-08 | 9 |
nuclear complex of neuraxis | 1.12e-08 | 9 |
nucleus of brain | 1.12e-08 | 9 |
aggregate regional part of brain | 1.12e-08 | 9 |
collection of basal ganglia | 1.12e-08 | 9 |
cerebral subcortex | 1.12e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 1.83e-14 | 5 |