FFCP PHASE1:Hg19::chr3:157827856..157827916,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51319 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24152 | |||
|TSSclassifier=strong | |||
|UniProt=C9J367,C9J713,Q96IZ7 | |||
|association_with_transcript=0bp_to_ENST00000312179,ENST00000464171,ENST00000471994,ENST00000475278,NM_016625,uc003fbt.2,uc003fbu.1,uc003fbv.2,uc011bou.1_5end | |||
|description=CAGE_peak_1_at_RSRC1_5end | |||
|id=chr3:157827856..157827916,+ | |||
|ontology_enrichment_celltype=CL:0000037!2.79e-26!172;CL:0000566!2.79e-26!172;CL:0002032!2.67e-24!165;CL:0000837!2.67e-24!165;CL:0000988!4.35e-23!182;CL:0000738!2.43e-15!140;CL:0002031!2.82e-14!124;CL:0000763!3.81e-14!112;CL:0000049!3.81e-14!112;CL:0002087!2.60e-12!119;CL:0000542!4.99e-10!53;CL:0000051!4.99e-10!53;CL:0000838!1.58e-09!52 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,3.46e-26,168;CL:0002032,3.30e-24,161;CL:0000837,3.30e-24,161;CL:0000988,1.48e-23,177;CL:0000738,3.14e-15,136;CL:0002031,3.49e-14,120;CL:0000763,4.46e-14,108;CL:0000049,4.46e-14,108;CL:0002087,3.30e-12,115;CL:0000542,4.99e-10,53;CL:0000051,4.99e-10,53;CL:0000838,1.58e-09,52 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.82e-07;82 | |||
|ontology_enrichment_disease=DOID:162!3.53e-17!235;DOID:2531!6.28e-17!51;DOID:0060083!6.28e-17!51;DOID:14566!2.74e-16!239;DOID:1240!1.32e-14!39;DOID:8692!1.39e-12!31;DOID:0050686!1.25e-11!137;DOID:0050687!7.86e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:8692;3.96e-12;31!DOID:1240;6.46e-12;39!DOID:2531;1.54e-10;51!DOID:0060083;1.54e-10;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.51e-17,235;DOID:2531,6.28e-17,51;DOID:0060083,6.28e-17,51;DOID:14566,2.73e-16,239;DOID:1240,1.32e-14,39;DOID:8692,1.39e-12,31;DOID:0050686,1.25e-11,137;DOID:0050687,7.83e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0007023!6.07e-16!115;UBERON:0001049!1.06e-12!57;UBERON:0005068!1.06e-12!57;UBERON:0006241!1.06e-12!57;UBERON:0007135!1.06e-12!57;UBERON:0002780!4.30e-11!41;UBERON:0001890!4.30e-11!41;UBERON:0006240!4.30e-11!41;UBERON:0003080!6.70e-11!42;UBERON:0001017!1.26e-10!82;UBERON:0000073!1.74e-10!94;UBERON:0001016!1.74e-10!94;UBERON:0000955!4.91e-10!69;UBERON:0006238!4.91e-10!69;UBERON:0005743!1.02e-09!86;UBERON:0002616!1.55e-09!59;UBERON:0002020!1.03e-08!34;UBERON:0003528!1.03e-08!34;UBERON:0001893!2.37e-08!34;UBERON:0002791!4.30e-08!33;UBERON:0001869!5.79e-08!32;UBERON:0002346!4.52e-07!90;UBERON:0003075!6.40e-07!86;UBERON:0007284!6.40e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;4.64e-08;41!UBERON:0001890;4.64e-08;41!UBERON:0003528;1.61e-07;34!UBERON:0002020;1.61e-07;34!UBERON:0000073;1.80e-07;53!UBERON:0002616;1.80e-07;53!UBERON:0001893;2.70e-07;34!UBERON:0001869;3.18e-07;32!UBERON:0002791;3.32e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.61e-15,114;UBERON:0001049,7.25e-13,56;UBERON:0005068,7.25e-13,56;UBERON:0006241,7.25e-13,56;UBERON:0007135,7.25e-13,56;UBERON:0000073,7.05e-12,53;UBERON:0002616,7.05e-12,53;UBERON:0001016,1.83e-11,89;UBERON:0002780,4.30e-11,41;UBERON:0001890,4.30e-11,41;UBERON:0003080,4.30e-11,41;UBERON:0006240,4.30e-11,41;UBERON:0001017,1.04e-10,81;UBERON:0000955,3.92e-10,68;UBERON:0006238,3.92e-10,68;UBERON:0003528,1.03e-08,34;UBERON:0002020,1.03e-08,34;UBERON:0001893,2.37e-08,34;UBERON:0001869,5.79e-08,32;UBERON:0002791,6.34e-08,32 | |||
|phase1_expression=30.7036460967241,19.6972481979704,25.2308383331788,6.00439790118782,12.5149106439641,6.10636966870258,2.53299878168311,22.1101955699391,10.9697963843932,6.63481628554074,0.697801167972428,10.4851858622483,5.27533956456907,15.4707941200058,8.28493439319789,14.7911532219391,13.8619741445515,10.2243412654232,9.75865597581014,9.23407935575909,3.26401105990805,4.70182082217132,29.7685426616299,26.1430151889209,23.2253883250385,56.0874398189962,58.6198208672613,63.3621789575118,16.521299627654,41.8374043925962,24.1513152373079,9.19421224478927,6.32532429434325,3.32778609150109,66.1569892955776,69.2364162213743,40.2232601888741,45.427623499614,45.7241340231923,30.1645110295034,48.1418269615837,48.9079435688659,65.9393453143518,27.044072412999,23.0504325650174,27.8971670365989,19.0591810262661,27.1370806094405,23.847390558923,17.8369283239733,20.7490172288572,26.249527517633,27.2349087781929,20.6555098746824,24.3767675869815,27.1068968941351,28.1093334559581,28.7646060089708,26.6292986362685,43.3254186552726,31.9668562899521,19.1313754108295,14.9597743216224,12.3605177654481,27.8600869083441,24.9649498864101,22.4216009638407,19.8486445552827,27.1171117578505,29.754871724601,30.8753746343018,43.8250386825202,33.2285506812929,53.4475874369213,55.0645136909463,56.1885169962447,41.1122789996172,43.7014758168783,74.4159466407481,42.1818860737048,59.675003159727,54.7992461293902,22.879511779972,39.8681186221356,44.4754626931777,54.1947382659464,44.0435585739614,34.485146397269,32.3911987664582,31.483773899667,52.9368061271787,52.2641098540136,51.2246125687807,37.0079720021272,25.2228853341691,46.3555989204136,65.1109339076787,36.1569901729232,30.6346233509269,40.9606913707161,41.7180501290996,32.1944507899619,25.3274746930285,32.754674324241,35.3527088969805,36.9961603954647,61.4724770746585,24.7216247070553,21.5898516949398,26.9678163550029,21.831651405082,57.0912078898053,54.7177418068003,55.3809514145706,42.8595647600405,49.8561107869291,33.7234034369691,40.2044111214677,66.2911593091097,32.812237675382,38.4139237775287,25.6622052001061,40.2035567937653,45.4352469598185,47.4736760898914,39.0682465872628,27.9183518953156,52.6193599816552,37.441627409691,45.1852140114333,43.8852359365131,12.7433163343691,19.8186970857472,24.5778623621505,12.0321098552613,12.0222610737484,28.6302940938396,10.2193322763554,28.1713755148922,14.1906814376041,13.8778961395139,21.6770369948714,4.00724817121796,8.15725774125745,38.945687238562,54.1543483000721,29.9155411167447,50.5600123527325,52.0515368809916,49.7753051781617,14.5096557377695,6.881876760849,10.4142150482278,5.6530794192401,9.22898759661793,10.4544855937226,7.73281376186199,20.9317574927156,27.3940022268767,26.7776490211736,8.45941565929209,11.4040815857777,7.56592378399325,15.4418493745265,0.81014194788176,37.3272864227453,33.2303471486731,29.9546538085637,4.5994991239765,0.949265659568129,10.808902891894,13.1780417436063,31.022421131866,5.23312862571041,9.93943903390637,21.400556471314,32.9698860224915,20.3654000731658,25.8907919004801,11.7742296029885,10.6748995729705,8.14002909776628,32.0547366461759,17.7818087131988,19.942352179842,10.1409476522104,17.2852777344,9.13853584151807,16.544484072007,9.12754914471119,12.1053431246959,25.953024200272,23.7953228221153,30.6182758610902,28.7857381469399,29.9715734240714,15.2922156140133,21.384051431077,11.1270118175351,1.82032272387605,0.718618141816238,40.4006673489759,36.7848448423575,49.3174125561846,19.3150153187569,13.4854630151569,16.0754723030059,24.7282159288846,29.0611209815956,22.8506406035867,26.0676238426261,18.9057390533173,26.4845000142788,18.5501188832853,18.0533350641642,46.2447150341069,21.0463931148189,25.7482449728997,23.380674255144,37.1785930683267,22.7206139210633,28.009083307284,19.8385893003271,24.3508674985754,30.8203116267643,24.3783906080653,17.198292564273,22.7951201512955,14.4080489158203,18.0370235726745,18.1671012630452,21.533664185474,3.12899064659632,9.00537313470039,4.14404764057442,17.6459812652152,9.38443326170461,23.4247464078891,30.0080748339021,28.4393015262509,24.0440860556619,23.7488594060723,24.676144387554,28.8538999462752,25.9012333965457,31.9340140265504,5.16708818237254,1.40241773803446,4.5273141246454,1.47008711385542,21.5483559197112,38.3302614504274,25.9947558939818,63.129223216295,33.0838899680975,21.2744084770172,15.8040410988421,4.49607013030478,19.7036785926796,22.3138152832056,7.16778271682714,1.03993478527958,15.8764476227801,24.6931762596914,15.8501737218359,14.2922783283463,12.0376233269919,14.8398238742987,17.3844967551041,15.4527509177077,49.4896182235669,62.9471473224549,41.022200791689,16.8720901176199,32.4205507423799,34.8766739216271,23.5538914708491,22.0881793270611,9.58456697913028,264.067495512226,71.1431346826867,60.954465968987,72.2040966618977,59.9651558775305,42.8610786472141,11.0776643411901,5.86087236050235,6.84289784090821,22.0050834385112,18.9216126441668,24.2952467735991,17.4924491578763,13.950722202665,42.9762354910767,18.3565836376044,3.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| |||
|short_description=p1@RSRC1 | |||
}} |
Revision as of 22:18, 21 January 2014
Short description: | p1@RSRC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RSRC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000312179, ENST00000464171, ENST00000471994, ENST00000475278, NM_016625, uc003fbt.2, uc003fbu.1, uc003fbv.2, uc011bou.1_5end |
EntrezGene: | RSRC1 |
HGNC: | 24152 |
UniProt: | C9J367C9J713Q96IZ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 3.46e-26 | 168 |
hematopoietic oligopotent progenitor cell | 3.30e-24 | 161 |
hematopoietic multipotent progenitor cell | 3.30e-24 | 161 |
hematopoietic cell | 1.48e-23 | 177 |
leukocyte | 3.14e-15 | 136 |
hematopoietic lineage restricted progenitor cell | 3.49e-14 | 120 |
myeloid cell | 4.46e-14 | 108 |
common myeloid progenitor | 4.46e-14 | 108 |
nongranular leukocyte | 3.30e-12 | 115 |
lymphocyte | 4.99e-10 | 53 |
common lymphoid progenitor | 4.99e-10 | 53 |
lymphoid lineage restricted progenitor cell | 1.58e-09 | 52 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.61e-15 | 114 |
neural tube | 7.25e-13 | 56 |
neural rod | 7.25e-13 | 56 |
future spinal cord | 7.25e-13 | 56 |
neural keel | 7.25e-13 | 56 |
regional part of nervous system | 7.05e-12 | 53 |
regional part of brain | 7.05e-12 | 53 |
nervous system | 1.83e-11 | 89 |
regional part of forebrain | 4.30e-11 | 41 |
forebrain | 4.30e-11 | 41 |
anterior neural tube | 4.30e-11 | 41 |
future forebrain | 4.30e-11 | 41 |
central nervous system | 1.04e-10 | 81 |
brain | 3.92e-10 | 68 |
future brain | 3.92e-10 | 68 |
brain grey matter | 1.03e-08 | 34 |
gray matter | 1.03e-08 | 34 |
telencephalon | 2.37e-08 | 34 |
cerebral hemisphere | 5.79e-08 | 32 |
regional part of telencephalon | 6.34e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.51e-17 | 235 |
hematologic cancer | 6.28e-17 | 51 |
immune system cancer | 6.28e-17 | 51 |
disease of cellular proliferation | 2.73e-16 | 239 |
leukemia | 1.32e-14 | 39 |
myeloid leukemia | 1.39e-12 | 31 |
organ system cancer | 1.25e-11 | 137 |
cell type cancer | 7.83e-08 | 143 |