FFCP PHASE1:Hg19::chr3:11762202..11762226,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9686 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28966 | |||
|TSSclassifier=strong | |||
|UniProt=Q14135,G5E9F4,E7EWF5,Q0H0I7 | |||
|association_with_transcript=0bp_to_ENST00000273038,ENST00000404339,ENST00000445411,NM_014667,uc003bwf.2,uc003bwg.2_5end | |||
|description=CAGE_peak_7_at_VGLL4_5end | |||
|id=chr3:11762202..11762226,- | |||
|ontology_enrichment_celltype=CL:0000066!5.47e-24!254;CL:0002076!2.86e-13!43;CL:0000223!8.10e-11!59;CL:0002251!2.14e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.88e-12;42!CL:0002251;8.73e-09;20!CL:0000039;4.46e-07;7!CL:0000586;4.46e-07;7!CL:0002537;7.75e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.88e-20,253;CL:0002076,5.83e-17,42;CL:0000223,4.22e-12,58;CL:0002251,6.93e-09,20;CL:0000039,6.94e-07,7;CL:0000586,6.94e-07,7 | |||
|ontology_enrichment_development_v019=CL:0000223;2.90e-08;58 | |||
|ontology_enrichment_disease=DOID:305!1.44e-20!106;DOID:0050687!4.69e-17!143;DOID:299!1.31e-08!25;DOID:1749!2.01e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.68e-13;14!DOID:299;9.53e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.06e-18,106;DOID:1749,9.64e-14,14;DOID:0050687,1.32e-13,143;DOID:162,2.16e-07,235;DOID:14566,6.39e-07,239;DOID:299,9.74e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.80e-12!169;UBERON:0000925!7.80e-12!169;UBERON:0006595!7.80e-12!169;UBERON:0001004!1.32e-08!72;UBERON:0004921!3.51e-08!129;UBERON:0004185!3.51e-08!129;UBERON:0001007!3.66e-08!155;UBERON:0001555!3.66e-08!155;UBERON:0007026!3.66e-08!155;UBERON:0000077!7.23e-08!130;UBERON:0000064!3.94e-07!219;UBERON:0000065!7.74e-07!53;UBERON:0005631!8.13e-07!14;UBERON:0000158!8.13e-07!14 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.98e-10,160;UBERON:0000925,1.98e-10,160;UBERON:0006595,1.98e-10,160;UBERON:0005631,3.79e-08,14;UBERON:0000158,3.79e-08,14 | |||
|phase1_expression=0.726713517082227,0,1.12763523276777,0,0,0.872338524100369,0,0,0.522371256399677,0.491467873003018,0,0.436882744260345,0.263766978228454,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0.286235987131057,0.547497700291537,0.627713197974014,0.0764134057479513,0.0821005894499457,0,0,0.767658796194425,0,0.919421224478927,0.30120591877825,2.21852406100073,2.24654881682875,2.27470771979874,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0.853460445133014,0,1.14950487990897,0,0,0,1.17447437874188,1.52909291250092,0,0,0.263384084775077,1.37696839079683,0,0.616804496998528,0.334372990781356,0,0.473447805734733,0,0.111410456885174,0,0.443067789167242,0.812411591295047,0.640456598628376,0.520237390239513,0,0.552700035571697,0,0.296573126324121,0,0,0.566546713487831,0.766440987203842,1.03088233644789,0.253019692019503,0.318565414324097,0.651083453856419,0,0.301150238155546,0.255973222308837,0,0.236777252044017,0,1.00803371612366,0.534880391567015,1.44824403882799,0,0,0,0,1.00267582127178,0.289693037921647,0,0.486634870302636,0,0,0,0.327447688744282,3.27865759463288,3.70784442784429,0,0,0.132957960518865,0,0,0,0.39752481473341,0,0.694281003215189,0,0,0,0,0,0,0.33472061276467,0.402829317109147,0,0.488124115096339,0,0,0.0892997282840798,0,0.225222960966644,0,0,0,0,0,5.66922267785295,0,0,0,0.286836620748814,0.709336764396714,0,0,0.24666754841716,0,0,0.326923806226917,0.151357427644931,0,0,0,0,0.149448680551801,0,0,0,0,0,0.103325781175765,1.18800285728205,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0.427114777637135,0.635795703478686,0,0.103052529238439,0.257640540045629,0.37223371266318,0.168776332241266,0.389748020644795,0,0.184099797284599,0.161646056818812,0,0.201504196455281,0,1.15956511897978,0.272746120590835,1.14721838155602,0.853815942907168,0.927708378250397,0.929551542956147,0.725627385107593,0.504641701751257,0.36497735907583,0,1.28648187638577,0,0,0,0,0.168584690078102,0.241011029883482,0.772057809126758,0.653638332277218,0.71181185733329,0.674156540800822,0.196221465125346,0.769494313892781,0,0,0.8231480226628,1.47008711385542,0,0.982827216677626,0.590789906681404,0,1.96781501668982,0,1.53650399572076,2.24803506515239,1.3068766413512,2.68506490959736,0.325808305310325,0,1.44331342025273,0,0.117408694235822,0.144366447761074,0.462985512576611,0.190254152234598,1.58040879591855,4.29243081047436,0,0,0,0.93733833986777,0.839910640994298,0.141775097242386,1.79117045405697,1.74380363108377,0.766765358330422,0,0,0.621984346622316,0.144119953416961,0,0.253991577168676,0.763976851116555,0,0,1.43958489784653,0.600686115687835,0,0.336393253036082,0,0,0.129271715757778,0,0,1.06375246633948,1.04007436911366,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0.179060963239896,0,0.985153801009636,0.646882724578552,1.15508732651774,0,0,0,0.335032530668698,0,0,0,0,0.24538298343828,0.500170521059677,0.271265023699736,1.24782516918484,0.713715955188647,0.473107245101804,0.819989904948992,0.300946099727719,0,1.03473071292505,0,0,0.260650843404249,0.391602314925481,1.37257369524342,0.206768026122887,0.431428401637234,0.426910231213777,1.5156378572313,1.66435439510497,0.604780586659361,0.496215615637554,0.767309866440312,0.561320188866147,0.640695746278505,0,0.321707842287215,0,0,0,0,0,0,1.32945394550784,1.40354529212299,5.24861636934609,0,0,0.262248829918848,0.451199612907412,0.924184045252977,0,0,0.527758144464379,1.13733384070897,0.170093705276516,0.215915916102139,0,0,0.501689773854853,1.27438136522519,1.66215201785745,0.671624264166535,0,0,2.05160100093111,0.656029291399411,2.27764876265012,0.721287081534056,0.183138929636687,0.41254749960294,2.29706215198469,1.95018073810956,0,0,0,0.15350367472613,0,0,0,0,0,2.31398881505369,1.53752053892085,2.04180339991335,3.0347334256665,0.464845549297286,0,0,0,0,0,0.18532421910392,0,0,0,0.190630193923825,0,0.42793898803392,0,0,0.359744915166629,0.274537029736055,0.235624804691373,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0.438450885253763,0,0,0.202910376962704,0.30982349809975,0,0,0.0982490410131212,0,0,0.422215270595328,0,0,0,1.53955380360819,2.01090682660736,1.08890984861323,1.12972560932135,0.86101074534246,3.36942951335251,3.10401107475673,1.60806380144872,0,0,0,0,0.411362273086194,0,0.540031437238115,0.79312517629427,0.747768497892312,0.962479855263359,1.71528151186722,0,0.28853842595289,0,0.478278818186467,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0.390776190804081,0,0,0,0,0,1.30998378285754,0.439524537815682,0.606802608747567,5.57216921387392,0,3.81991175580304,1.48482340416319,4.60741053148848,0,0.140669416410513,0,0.16480387422676,1.05562704063997,1.79323189425963,0,0.503865495708552,0.20453736500431,0,0,0.718946809178615,3.58042349351218,0.511572370226872,1.08507746200627,0,1.11136990144637,0,0.0927680981618513,1.99613798001194,2.60427761085233,1.13697999995054,0.724999575434793,1.93448862085349,0.762760950878299,2.12748913591143,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| |||
|short_description=p7@VGLL4 | |||
}} |
Revision as of 17:24, 21 January 2014
Short description: | p7@VGLL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_VGLL4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000273038, ENST00000404339, ENST00000445411, NM_014667, uc003bwf.2, uc003bwg.2_5end |
EntrezGene: | VGLL4 |
HGNC: | 28966 |
UniProt: | Q14135G5E9F4E7EWF5Q0H0I7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.88e-20 | 253 |
endo-epithelial cell | 5.83e-17 | 42 |
endodermal cell | 4.22e-12 | 58 |
epithelial cell of alimentary canal | 6.93e-09 | 20 |
germ line cell | 6.94e-07 | 7 |
germ cell | 6.94e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.98e-10 | 160 |
endoderm | 1.98e-10 | 160 |
presumptive endoderm | 1.98e-10 | 160 |
extraembryonic membrane | 3.79e-08 | 14 |
membranous layer | 3.79e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.06e-18 | 106 |
squamous cell carcinoma | 9.64e-14 | 14 |
cell type cancer | 1.32e-13 | 143 |
cancer | 2.16e-07 | 235 |
disease of cellular proliferation | 6.39e-07 | 239 |
adenocarcinoma | 9.74e-07 | 25 |