FFCP PHASE1:Hg19::chr20:32150185..32150230,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9139 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1536 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000492345_5end | |||
|coexpression_cluster_id=C4024 | |||
|description=CAGE_peak_3_at_CBFA2T2_5end | |||
|id=chr20:32150185..32150230,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000764;9.73e-15;2!CL:0000558;9.73e-15;2!CL:0000333;2.63e-12;5!CL:0000167;2.70e-08;1!CL:0000164;2.70e-08;1!CL:0000502;2.70e-08;1!CL:0000172;2.70e-08;1!CL:0000173;2.70e-08;1!CL:0002553;3.45e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,9.74e-15,2;CL:0000765,9.74e-15,2;CL:0000050,9.74e-15,2;CL:0000038,9.74e-15,2;CL:0000558,9.74e-15,2;CL:0000547,9.74e-15,2;CL:0000549,9.74e-15,2;CL:0000550,9.74e-15,2;CL:0000552,9.74e-15,2;CL:0000167,2.71e-08,1;CL:0000164,2.71e-08,1;CL:0000502,2.71e-08,1;CL:0000172,2.71e-08,1;CL:0000173,2.71e-08,1;CL:0002351,2.71e-08,1;CL:0002553,3.58e-08,1 | |||
|ontology_enrichment_development_v019=CL:0002351;2.70e-08;1 | |||
|ontology_enrichment_disease=DOID:171!5.31e-12!10;DOID:169!2.00e-08!6 | |||
|ontology_enrichment_disease_v019=DOID:171;2.64e-23;10!DOID:169;7.36e-18;6!DOID:5409;1.02e-15;4!DOID:4362;2.51e-13;5!DOID:3095;2.47e-10;22!DOID:2994;2.47e-10;22!DOID:1325;3.34e-09;7!DOID:3904;3.34e-09;7!DOID:4430;2.70e-08;1!DOID:3119;5.77e-08;14!DOID:1324;2.27e-07;15!DOID:3905;2.94e-07;9!DOID:0050615;6.49e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:171,5.37e-23,10;DOID:169,1.30e-17,6;DOID:5409,8.35e-16,4;DOID:4362,2.56e-13,5;DOID:3095,3.37e-10,22;DOID:2994,3.37e-10,22;DOID:1325,2.98e-09,7;DOID:3904,2.98e-09,7;DOID:0050687,7.31e-09,143;DOID:4430,2.71e-08,1;DOID:3119,5.36e-08,14;DOID:1324,2.14e-07,15;DOID:3905,2.70e-07,9;DOID:0050615,6.15e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0001049!6.31e-23!57;UBERON:0005068!6.31e-23!57;UBERON:0006241!6.31e-23!57;UBERON:0007135!6.31e-23!57;UBERON:0000073!3.18e-22!94;UBERON:0001016!3.18e-22!94;UBERON:0002346!2.23e-20!90;UBERON:0001017!7.93e-19!82;UBERON:0002616!1.11e-18!59;UBERON:0005743!1.13e-18!86;UBERON:0000153!1.75e-18!129;UBERON:0007811!1.75e-18!129;UBERON:0007023!3.89e-18!115;UBERON:0002780!5.65e-18!41;UBERON:0001890!5.65e-18!41;UBERON:0006240!5.65e-18!41;UBERON:0003075!1.32e-17!86;UBERON:0007284!1.32e-17!86;UBERON:0000924!1.69e-17!173;UBERON:0006601!1.69e-17!173;UBERON:0003080!2.15e-17!42;UBERON:0000955!5.00e-17!69;UBERON:0006238!5.00e-17!69;UBERON:0001893!1.05e-16!34;UBERON:0002020!1.34e-16!34;UBERON:0003528!1.34e-16!34;UBERON:0000033!6.58e-16!123;UBERON:0002791!1.72e-15!33;UBERON:0004121!2.46e-15!169;UBERON:0003056!1.28e-14!61;UBERON:0001869!3.69e-14!32;UBERON:0002298!4.34e-11!8;UBERON:0002619!4.58e-10!22;UBERON:0000956!4.90e-10!25;UBERON:0000203!4.90e-10!25;UBERON:0001950!1.13e-09!20;UBERON:0002308!9.79e-09!9;UBERON:0000125!9.79e-09!9;UBERON:0000064!6.39e-07!219;UBERON:0003076!9.31e-07!15;UBERON:0003057!9.31e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;2.63e-12;5!UBERON:0002410;2.63e-12;5!UBERON:0000002;3.46e-11;6!UBERON:0001560;3.46e-11;6!UBERON:0002346;1.49e-07;4!UBERON:0000923;1.49e-07;4!UBERON:0010316;1.49e-07;4!UBERON:0005291;1.49e-07;4!UBERON:0000010;4.72e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,4.38e-12,5;UBERON:0002410,4.38e-12,5;UBERON:0000002,3.52e-11,6;UBERON:0001560,3.52e-11,6;UBERON:0000010,6.21e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0.364295288292542,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0.0925884451585296,0,0,0,0.115930404975077,0,0,0.462985512576611,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54657762555539,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.48149691614836,4.96727356947311,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0.111308705022906,0,0,0,0,16.8794941062365,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,1.45802306691627,0.520874984799877,0,0.120596438625408,0,0,0,0,0,8.08657716815899,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.90794580678476,0.163232808159148,0,0,0,0.0884575645033392,1.83309043480088,0,0,0,0.808813595768125,0,0,0,0,0,0,1.20990716048664,0.30607276163049,0.126373159256976,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0.443175571691151,0,0,0,0,0,0,7.55017990592644,0.14405479798815,0.124252535565433,0,0,0,0,0,0,0.410716136675979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0.136203406111576,0,0,0,0,0,0.242998226632099,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0.646414781807753,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0.244052529803926,0,1.14681839138014,0.554645257684261,0.620964029413834,0.691743174681154,0,0,0,0,0,14.05733977525,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,1.02315497042921,1.07824811396682,0,0.436838552768056,0,1.06287460050841,2.23084375666204,1.11728983594649,0,0,4.00285374142735,0,0,0.128458450192919,0,0,0,0.504143392443436,0.484100767249525,0.161475645631851,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0.472763092328763,0,0.206686796501184,0.570742291745161,0,0,0,0.879356221798103,0,0,0,0.606965604236632,0,0,0,0,0.475788130837822,0.197318320688547,0,0.111231401892069,1.02041020705668,0.314231179832004,0,0,0,0,0.214429632529969,0,0,0,0,0,0.51215543128185,0,0.430227358820278,0.118332000730565,0,0,0,0,0,0.782988022584546,0,0,0,0,0,0.485710993059139,17.5454597596579,3.780064728066,0,1.46829906650648,1.20934568419972,18.2665040715675,0.231522474323834,0,8.46571133450741,0,6.12759022464227,0.392616934229891,0,0.4226557275834,0,0,1.16024198352439,0,0,0,0,0.730336388246517,0,0.860037498908708,0,0.271965960763659,0.436350690340377,3.7031878836078,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,1.65833887891756,0.413731983447581,0.213233981900981,0.23806443146374,0.129177819672012,0.620747142958579,0,0,0.202117188958219,0.435433495793923,0,0.134704106029175,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@CBFA2T2 | |||
}} |
Revision as of 10:49, 21 January 2014
Short description: | p3@CBFA2T2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CBFA2T2_5end |
Coexpression cluster: | C4024_small_argyrophil_merkel_gastrointestinal_cervical_neuroblastoma_smallcell |
Association with transcript: | 0bp_to_ENST00000492345_5end |
EntrezGene: | CBFA2T2 |
HGNC: | 1536 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 9.74e-15 | 2 |
erythroblast | 9.74e-15 | 2 |
megakaryocyte-erythroid progenitor cell | 9.74e-15 | 2 |
erythroid progenitor cell | 9.74e-15 | 2 |
reticulocyte | 9.74e-15 | 2 |
proerythroblast | 9.74e-15 | 2 |
basophilic erythroblast | 9.74e-15 | 2 |
polychromatophilic erythroblast | 9.74e-15 | 2 |
orthochromatic erythroblast | 9.74e-15 | 2 |
peptide hormone secreting cell | 2.71e-08 | 1 |
enteroendocrine cell | 2.71e-08 | 1 |
type D enteroendocrine cell | 2.71e-08 | 1 |
somatostatin secreting cell | 2.71e-08 | 1 |
pancreatic D cell | 2.71e-08 | 1 |
progenitor cell of endocrine pancreas | 2.71e-08 | 1 |
lung fibroblast | 3.58e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 4.38e-12 | 5 |
autonomic nervous system | 4.38e-12 | 5 |
uterine cervix | 3.52e-11 | 6 |
neck of organ | 3.52e-11 | 6 |
peripheral nervous system | 6.21e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 5.37e-23 | 10 |
neuroendocrine tumor | 1.30e-17 | 6 |
lung small cell carcinoma | 8.35e-16 | 4 |
cervical cancer | 2.56e-13 | 5 |
germ cell and embryonal cancer | 3.37e-10 | 22 |
germ cell cancer | 3.37e-10 | 22 |
bronchus cancer | 2.98e-09 | 7 |
bronchogenic carcinoma | 2.98e-09 | 7 |
cell type cancer | 7.31e-09 | 143 |
somatostatinoma | 2.71e-08 | 1 |
gastrointestinal system cancer | 5.36e-08 | 14 |
lung cancer | 2.14e-07 | 15 |
lung carcinoma | 2.70e-07 | 9 |
respiratory system cancer | 6.15e-07 | 16 |