FFCP PHASE1:Hg19::chr2:102721118..102721143,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3554 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5993 | |||
|TSSclassifier=weak | |||
|UniProt=B8ZZ73 | |||
|association_with_transcript=89bp_to_ENST00000409329_5end | |||
|description=CAGE_peak_4_at_IL1R1_5end | |||
|id=chr2:102721118..102721143,+ | |||
|ontology_enrichment_celltype=CL:0000048!2.22e-21!430;CL:0000055!3.14e-21!180;CL:0000723!6.55e-20!436;CL:0000034!1.28e-18!444;CL:0000057!8.29e-18!75;CL:0002320!1.38e-12!365;CL:0000134!5.77e-12!358;CL:0000680!5.23e-11!57;CL:0000056!5.23e-11!57;CL:0000355!5.23e-11!57;CL:0000187!8.92e-10!54;CL:0002057!1.93e-09!42;CL:0000393!3.55e-09!60;CL:0000211!3.55e-09!60;CL:0002620!3.95e-09!23;CL:0000219!4.00e-09!390;CL:0000183!4.96e-08!59;CL:0000860!6.08e-08!45 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.80e-13;33!CL:0002057;2.80e-13;33!CL:0002620;5.05e-10;23!CL:0000473;3.06e-08;39!CL:0000234;3.06e-08;39!CL:0002494;4.93e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,1.35e-23,427;CL:0000723,1.34e-22,433;CL:0000034,6.28e-22,441;CL:0002320,9.13e-16,361;CL:0000134,3.27e-15,354;CL:0000057,1.25e-14,76;CL:0000860,2.64e-13,42;CL:0002057,2.64e-13,42;CL:0000219,2.94e-11,386;CL:0000473,1.78e-10,48;CL:0000234,1.78e-10,48;CL:0002620,4.14e-10,23;CL:0002009,2.04e-08,61;CL:0000680,6.53e-08,58;CL:0000056,6.53e-08,58;CL:0000355,6.53e-08,58;CL:0002194,3.13e-07,59;CL:0000576,3.13e-07,59;CL:0000040,3.13e-07,59;CL:0000559,3.13e-07,59;CL:0002494,5.78e-07,16;CL:0000557,6.80e-07,67 | |||
|ontology_enrichment_development_v019=CL:0002057;2.86e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!3.06e-13!167;UBERON:0000914!1.08e-12!83;UBERON:0002329!1.08e-12!83;UBERON:0003077!1.08e-12!83;UBERON:0003059!1.08e-12!83;UBERON:0007282!1.08e-12!83;UBERON:0009618!1.08e-12!83;UBERON:0007285!1.08e-12!83;UBERON:0004290!3.98e-12!70;UBERON:0002384!4.94e-12!375;UBERON:0002385!5.41e-10!63;UBERON:0001015!5.41e-10!63;UBERON:0000383!5.41e-10!63;UBERON:0001134!1.07e-09!61;UBERON:0002036!1.07e-09!61;UBERON:0003082!1.07e-09!61;UBERON:0000486!3.30e-09!82;UBERON:0005256!2.38e-08!143;UBERON:0000926!9.57e-08!448;UBERON:0004120!9.57e-08!448;UBERON:0006603!9.57e-08!448;UBERON:0000479!1.81e-07!787 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,7.24e-16,371;UBERON:0002204,6.61e-13,167;UBERON:0000926,1.79e-10,315;UBERON:0004120,1.79e-10,315;UBERON:0006603,1.79e-10,315;UBERON:0002329,4.91e-09,71;UBERON:0003059,4.91e-09,71;UBERON:0007282,4.91e-09,71;UBERON:0004290,4.91e-09,71;UBERON:0009618,4.91e-09,71;UBERON:0003077,9.13e-09,72;UBERON:0007285,9.13e-09,72;UBERON:0007524,1.66e-08,73;UBERON:0003081,3.31e-08,203;UBERON:0002371,2.30e-07,76;UBERON:0007503,2.52e-07,78;UBERON:0005256,4.95e-07,122;UBERON:0002097,5.15e-07,41;UBERON:0002199,5.24e-07,46;UBERON:0002416,5.24e-07,46;UBERON:0000486,6.63e-07,83;UBERON:0001134,7.20e-07,62;UBERON:0002036,7.20e-07,62;UBERON:0003082,7.20e-07,62 | |||
|phase1_expression=1.2717486548939,0.214100523890983,5.77913056793482,1.0007329835313,0,1.74467704820074,0,8.2123583545488,0.522371256399677,0,0,0,0,1.8564952944007,0.662794751455832,2.6893005858071,0,0.730310090387373,0.487932798790507,0.61560529038394,0.204000691244253,0.313454721478088,0.572471974262113,0.410623275218653,0.251085279189606,1.14620108621927,1.64201178899891,0.708397031823113,0,0.383829398097213,0.77408061658038,0,0,0,0,0,0,7.20194031091441,6.81851121398482,8.89744569934992,0,0,0.257575567634187,0.290796477559129,2.26725566213286,0.242584061187816,1.85943229524548,0.822335776043652,4.02618282163635,1.7261543539329,1.5369642391746,3.54723344832878,10.3423704220986,9.03678557017357,2.70852973188684,3.57660445130949,1.36453075028923,2.69668181334102,9.18251677112708,11.5534449747394,20.4587880255693,0.659702600373432,1.39624560335142,0,18.2831820336008,17.0215567407342,28.0270012048009,2.51248665256743,3.12889751052121,4.34377689410233,11.502590550034,25.7794345191295,36.3931745557017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,2.24203425192614,0,0,0,0.205601498999509,1.00311897234407,0,0,0,5.57052284425868,2.65145316727353,4.65221178625604,1.35401931882508,33.0475604892242,15.4770623596255,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0,0,0.710331756132051,0,0,0,0.144824403882799,29.2568239576754,16.0968206328873,10.8683177567001,1.80719576192283,2.50668955317945,2.02785126545153,7.95285947051099,4.37971383272372,0.283604451492204,0,0,0.327447688744282,0,0,0,0,0.132957960518865,0.476981248610684,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,3.87780264148325,0,0,6.45815609489357,12.4464629964426,30.1178451786254,4.25602058638028,6.72813120170769,0,0.74000264525148,22.4071945487832,6.06198024313596,8.82694276812677,0.302714855289863,1.72852777344,1.40592859100278,1.24864030732128,0.570471821544449,0.149448680551801,1.52664848236894,2.91371299862637,3.23036855415172,2.65400422631361,0.368502951935304,3.71972812232756,2.37600571456411,0.989067717114227,0,0,1.17835279767846,0.125118519871964,0.554128230968366,0.877955241761676,0.612975591598039,1.80285670687916,7.82682063804145,2.51145489964407,6.62027905337559,6.99375273826554,1.80054657650641,4.53431128649131,0.257640540045629,1.11670113798954,9.62025093775217,4.67697624773753,5.3011092591264,8.83679026966074,8.89053312503465,4.26011511019937,0.806016785821122,1.86516651541536,0,0,0,0,0,0,0,0,0,1.56449532329816,3.85944562915731,1.38134921352481,10.6804623447355,7.94067429836544,0.236613600079688,0.337169380156203,0.241011029883482,0.220587945464788,0.217879444092406,0.237270619111097,0.134831308160164,0,0,0,0,1.2347220339942,1.47008711385542,0,0.982827216677626,3.54473944008842,0,0,1.20097467208968,0,0,0,0,0.651616610620649,1.03993478527958,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0,0,0,0.112131084345361,0,0.1466765716419,0,0,2.535908257668,0,0,0.771622122786426,0,0.266422179016099,7.43485567022367,11.9376753186117,3.29296134712308,2.28015329005615,10.3063665135338,5.543663110534,3.91871190177462,0,0.599837947092342,0,0,0,0.239624855491583,0,0,5.06734573336527,1.02738161275192,14.5039380224315,0.112085143993527,0,0.431255149719035,0.128343036279748,0.508189248444927,0,0.773288812777695,1.17261385734044,1.91381625495949,0,0,0,3.6807447515742,2.00068208423871,0,0.207970861530807,0,0.157702415033935,0,0,0,0,0,0.184369168541703,1.73767228936166,0.195801157462741,0,0.206768026122887,1.94142780736755,1.921096040462,0.303127571446259,0,0,0.992431231275107,0.767309866440312,0.841980283299221,3.33161788064823,2.04682899626681,0.804269605718038,1.48418066444991,0.308419387605311,1.24293207719189,2.38168752440047,3.11552657510173,0.697262270759755,0,0,0,1.7222167224691,0.182091168006717,0.131124414959424,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,1.64865618636356,0,0,0.574265537996172,0,24.1025894766239,0.773365746336976,1.84858340537573,3.83759186815324,1.24052915236078,8.37877909972534,1.88521702088497,2.47157219506693,0.445160178233687,0.165284915360978,0,0.255225424989168,0,0.929691098594572,2.51849877464512,0.6970372701606,8.93297382510658,0,3.47973196830029,1.66791797193528,5.72499546967965,0.744316738719335,0.949138274156178,11.2471814415057,0.255897791311334,1.71175595213568,15.5919591483709,0.78494864019923,0.359744915166629,1.64722217841633,0.235624804691373,0.606547444719948,0,0,0,6.33655073041339,0,0,1.83827061539827,4.52032466480971,2.2054613741845,1.32687795048244,1.31535265576129,0.578775534266688,1.31178950409327,0.405820753925408,0.30982349809975,0.845086807596724,1.29070216983646,3.7334635584986,0.7133421029625,0,3.58882980006029,0.658589785919804,4.17420491142287,0.699869440489966,0,0,0,0.847294206991012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17206543417515,0,0,0.284136146806413,0,0,0,0,0.140669416410513,1.33570446027487,15.1619564288619,0,0.398495976502139,1.38141957765574,0,0.102268682502155,2.58478091468246,0.311039587661807,0,0.179021174675609,0,1.08507746200627,0,2.22273980289274,0,0.0927680981618513,0,0,0,0,0,0.254253650292766,0,0,0,0,1.77148277162768,0.120596438625408,0,0,0,0.438770794307945,0,0,1.07730361905316,6.95046540666707,0,0,0,0.638002319463839,0.732780747214898,0.533034776018635,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0.796118080530053,1.83309043480088,0,0,0,0,0,0.234264445725339,0,0,0,2.36750641709634,0,0,5.37085926842148,0,0,0,0,0,0,0,0,0,0,0.609414446062818,3.31980669659857,2.57979048707425,0,0,0,0.0969890164884194,0,0.451961481561065,0.137041924646751,0,0,0,4.00794101257669,0.85381197895741,0,0,0,0,0,0,0,0,0,0.815985741090574,0,0,0.136905378891993,0,0,0,0.558564802544508,0,0,0,0,0.446342914883745,0.134366944973453,0.360299883542404,0,0,0,0,0.590564889088493,0.0846733320657845,0,0.136203406111576,0,0,0,14.848276842399,15.476039091159,0,0,1.02447419488958,0.472091293214983,0,0,0,1.42939065274673,0,0,0.542999601753713,0,0.979762080328227,0,0,0,0,6.44829828183563,1.32506888912221,0.646414781807753,0.13223260174269,0.513260513652988,0,1.9221734262185,2.82967749179399,0.828478110694391,0,0,0,0,1.08803560673895,1.7548292581589,3.06345576763462,0.327872630709804,0,0,0.122026264901963,0,1.14681839138014,0,0.310482014706917,0,0,0,0,0,0,0,1.04478362020812,0.467426619694449,0.554805861502613,2.65164207385125,1.50940741051545,8.00830099436882,1.14420034198462,3.93200401784422,5.5957392209801,7.09704719950243,0.477890301491107,1.79921244865442,0.155262956876259,1.65882483136342,0,0,1.80309130796662,1.14241563650639,0.406870733204662,0.545545977607678,0.537052785212442,0,0.398095888698616,0.400027764663154,5.15093557774189,2.69399591012735,0,0,0,0,0,0,0,0,0.926404341482917,0.877136198314828,0,0,0,0,0,0,0.138258436151731,6.62525050053921,2.12583744501381,7.85113892428052,0,0.737318726261158,0,0,0,0,0,2.20927140302209,0,0,0,0,0,0,0,0,0,0,2.54403480522735,0,0,0.352675943690684,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0,7.13847101295772,0,0,0,0,1.1441462864015,0.690359926060101,0.198916222116275,0.601682626794058,5.64774192369856,0.781514011233092,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0.496211178389294,0,0.383287282918786,1.07140367175657,0.336283722218824,1.21393120847326,0.227662191351298,2.12885688390333,0.460935950223117,11.489696632307,0.271878931907327,0.0657727735628491,0,0,0.39246546425257,0,0,0,0.863710364874486,0.47775168788705,0.357382720883282,0,0,0,0.801711364730253,0.207216164163037,0,0,0,0.118332000730565,0.0852134047591577,0.846774100381858,0.9164274741762,4.34288939930048,1.91107787795487,0,0,0,0,0.513314034281235,0,0,0,0,0,0,0,0,0.926089897295336,0.437119121007915,0,0.490296643507811,0,0.588925401344836,1.18818560130834,0.4226557275834,0,0.187967835959707,0.837952543656503,2.49852889812322,0.178553938605658,0,0,0,0.458729283404541,0.430018749454354,0,0,0,1.0580536810308,5.57992527250127,16.6383226307311,1.73050624849516,0,0,0,0,0,0,0,0.454672189309436,0.267964130156178,0,0,0.426467963801962,0.23806443146374,0.0645889098360061,0.558672428662721,0,1.01835453245064,1.81905470062397,0.435433495793923,0.684466602170562,1.21233695426258,1.86477734020959,0.665320713092027,0.976839223331694,0,1.9307228228694,0,0,0.733448665097199,1.22068853494722,0,0.402547587182052,3.52625341533556 | |||
|short_description=p4@IL1R1 | |||
}} |
Revision as of 04:42, 21 January 2014
Short description: | p4@IL1R1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_IL1R1_5end |
Coexpression cluster: | NA |
Association with transcript: | 89bp_to_ENST00000409329_5end |
EntrezGene: | IL1R1 |
HGNC: | 5993 |
UniProt: | B8ZZ73 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 1.35e-23 | 427 |
somatic stem cell | 1.34e-22 | 433 |
stem cell | 6.28e-22 | 441 |
connective tissue cell | 9.13e-16 | 361 |
mesenchymal cell | 3.27e-15 | 354 |
fibroblast | 1.25e-14 | 76 |
classical monocyte | 2.64e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.64e-13 | 42 |
motile cell | 2.94e-11 | 386 |
defensive cell | 1.78e-10 | 48 |
phagocyte | 1.78e-10 | 48 |
skin fibroblast | 4.14e-10 | 23 |
macrophage dendritic cell progenitor | 2.04e-08 | 61 |
muscle precursor cell | 6.53e-08 | 58 |
myoblast | 6.53e-08 | 58 |
multi-potent skeletal muscle stem cell | 6.53e-08 | 58 |
monopoietic cell | 3.13e-07 | 59 |
monocyte | 3.13e-07 | 59 |
monoblast | 3.13e-07 | 59 |
promonocyte | 3.13e-07 | 59 |
cardiocyte | 5.78e-07 | 16 |
granulocyte monocyte progenitor cell | 6.80e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 7.24e-16 | 371 |
musculoskeletal system | 6.61e-13 | 167 |
mesoderm | 1.79e-10 | 315 |
mesoderm-derived structure | 1.79e-10 | 315 |
presumptive mesoderm | 1.79e-10 | 315 |
somite | 4.91e-09 | 71 |
presomitic mesoderm | 4.91e-09 | 71 |
presumptive segmental plate | 4.91e-09 | 71 |
dermomyotome | 4.91e-09 | 71 |
trunk paraxial mesoderm | 4.91e-09 | 71 |
paraxial mesoderm | 9.13e-09 | 72 |
presumptive paraxial mesoderm | 9.13e-09 | 72 |
dense mesenchyme tissue | 1.66e-08 | 73 |
lateral plate mesoderm | 3.31e-08 | 203 |
bone marrow | 2.30e-07 | 76 |
epithelial vesicle | 2.52e-07 | 78 |
trunk mesenchyme | 4.95e-07 | 122 |
skin of body | 5.15e-07 | 41 |
integument | 5.24e-07 | 46 |
integumental system | 5.24e-07 | 46 |
multilaminar epithelium | 6.63e-07 | 83 |
skeletal muscle tissue | 7.20e-07 | 62 |
striated muscle tissue | 7.20e-07 | 62 |
myotome | 7.20e-07 | 62 |