FFCP PHASE1:Hg19::chr19:47138167..47138185,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=94235 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19664 | |||
|TSSclassifier=not | |||
|UniProt=Q9UK08 | |||
|association_with_transcript=-228bp_to_ENST00000300873,NM_033258,uc010xyd.1_5end | |||
|coexpression_cluster_id=C150 | |||
|description=CAGE_peak_1_at_GNG8_5end | |||
|id=chr19:47138167..47138185,- | |||
|ontology_enrichment_celltype=CL:0000242!1.27e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0000123;1.31e-34;2!CL:0000242;1.31e-34;2!CL:0000312;1.72e-14;5!CL:0000240;3.08e-12;6!CL:0000311;3.08e-12;6!CL:0000079;3.08e-12;6!CL:0000237;3.08e-12;6!CL:0000095;1.55e-08;17!CL:0000362;1.83e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,1.31e-34,2;CL:0000312,1.72e-14,5;CL:0000240,3.08e-12,6;CL:0000311,3.08e-12,6;CL:0000079,3.08e-12,6;CL:0000237,3.08e-12,6;CL:0000036,3.08e-12,6;CL:0000357,3.08e-12,6;CL:0000114,3.08e-12,6;CL:0000095,1.57e-08,17;CL:0000123,1.57e-08,17;CL:0000362,1.83e-08,9 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.25e-22;3!UBERON:0005425;1.57e-17;1!CL:0000357;3.08e-12;6!CL:0000114;3.08e-12;6!UBERON:0006238;6.26e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.59e-47!57;UBERON:0005068!1.59e-47!57;UBERON:0006241!1.59e-47!57;UBERON:0007135!1.59e-47!57;UBERON:0000955!3.86e-43!69;UBERON:0006238!3.86e-43!69;UBERON:0002616!1.90e-42!59;UBERON:0000073!8.58e-41!94;UBERON:0001016!8.58e-41!94;UBERON:0001017!2.98e-40!82;UBERON:0002780!5.98e-40!41;UBERON:0001890!5.98e-40!41;UBERON:0006240!5.98e-40!41;UBERON:0003080!7.17e-39!42;UBERON:0005743!5.20e-38!86;UBERON:0001893!5.87e-33!34;UBERON:0002346!1.23e-31!90;UBERON:0003075!2.73e-31!86;UBERON:0007284!2.73e-31!86;UBERON:0002791!9.97e-31!33;UBERON:0002020!7.49e-30!34;UBERON:0003528!7.49e-30!34;UBERON:0002619!1.58e-29!22;UBERON:0001869!2.18e-28!32;UBERON:0001950!3.50e-28!20;UBERON:0003056!1.61e-27!61;UBERON:0000956!1.10e-25!25;UBERON:0000203!1.10e-25!25;UBERON:0000924!8.65e-24!173;UBERON:0006601!8.65e-24!173;UBERON:0004121!3.55e-23!169;UBERON:0000033!7.93e-21!123;UBERON:0000153!1.72e-19!129;UBERON:0007811!1.72e-19!129;UBERON:0007023!3.48e-18!115;UBERON:0001871!8.12e-15!7;UBERON:0004732!1.28e-11!13;UBERON:0000025!2.61e-11!194;UBERON:0000349!3.80e-11!5;UBERON:0001872!4.95e-11!5;UBERON:0002298!6.18e-10!8;UBERON:0003076!7.77e-10!15;UBERON:0003057!7.77e-10!15;UBERON:0004733!2.93e-09!12;UBERON:0002028!2.93e-09!12;UBERON:0007277!2.93e-09!12;UBERON:0002420!4.44e-09!9;UBERON:0007245!4.44e-09!9;UBERON:0010009!4.44e-09!9;UBERON:0010011!4.44e-09!9;UBERON:0000454!4.44e-09!9;UBERON:0000064!1.95e-08!219;UBERON:0001894!2.62e-08!7;UBERON:0006222!2.62e-08!7;UBERON:0001897!4.70e-08!2;UBERON:0001876!9.66e-08!2;UBERON:0005162!1.27e-07!2;UBERON:0000122!1.27e-07!2;UBERON:0004111!1.35e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.57e-17;1!UBERON:0001785;1.57e-17;1!UBERON:0002464;1.57e-17;1!UBERON:0004904;1.57e-17;1!UBERON:0001021;1.57e-17;1!UBERON:0001905;1.64e-09;2!UBERON:0002757;1.64e-09;2!UBERON:0010134;1.64e-09;2!UBERON:0005408;1.64e-09;2!UBERON:0001899;1.64e-09;2!UBERON:0003714;1.94e-09;2!UBERON:0005162;1.94e-09;2!UBERON:0000122;1.94e-09;2!UBERON:0000922;3.35e-08;49!UBERON:0000010;3.68e-08;8!UBERON:0001950;9.62e-08;20!UBERON:0001016;3.03e-07;83!UBERON:0002619;4.08e-07;22!UBERON:0002114;6.14e-07;2!UBERON:0000955;6.60e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.70e-17,1;UBERON:0001785,1.70e-17,1;UBERON:0002464,1.70e-17,1;UBERON:0004904,1.70e-17,1;UBERON:0001021,1.70e-17,1;UBERON:0003902,1.70e-17,1;UBERON:0005425,1.70e-17,1;UBERON:0000966,8.35e-12,6;UBERON:0005388,8.35e-12,6;UBERON:0001802,8.35e-12,6;UBERON:0001016,7.00e-11,89;UBERON:0001905,1.57e-09,2;UBERON:0002757,1.57e-09,2;UBERON:0010134,1.57e-09,2;UBERON:0005408,1.57e-09,2;UBERON:0001899,1.57e-09,2;UBERON:0010371,1.58e-09,104;UBERON:0003714,2.02e-09,2;UBERON:0005162,2.02e-09,2;UBERON:0000122,2.02e-09,2;UBERON:0003056,2.26e-09,61;UBERON:0004121,1.11e-08,171;UBERON:0000924,1.11e-08,171;UBERON:0006601,1.11e-08,171;UBERON:0000955,2.61e-08,68;UBERON:0006238,2.61e-08,68;UBERON:0000010,3.68e-08,8;UBERON:0001950,9.73e-08,20;UBERON:0002619,4.13e-07,22;UBERON:0001017,5.75e-07,81;UBERON:0002114,6.14e-07,2;UBERON:0003075,6.16e-07,82;UBERON:0007284,6.16e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.310983165046111,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,5.98841394003583,0,0,0,0,0,0,0.689486746482929,0,0,0,0.361789315876224,0,0.442317039724898,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225595660617181,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0.067401132980677,0,0,0,0,0,0,0,7.95789180239274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.953423842781029,0,0,0,0,0,0.425246896606173,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0.366078794705889,0,0,0.332787154610557,0.0620964029413835,0,0,0,0,0,28.5684292542198,9.27494583109281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53473245564382,0,0,0.109209638192014,0,0,0.123935764259002,0,0,0,0,0,0,0.256916900385838,0,0,0,4.03314713954749,0.0691572524642179,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0.781078098613847,0.206686796501184,0.0634158101939068,6.56369770821863,0,0,0,0,2.14280734351315,0,0.606965604236632,0,0,0,0,0.271878931907327,0,0,0,0,0,0,0.913158720509496,0,0,0,2.05417695252545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.701818390386317,4.3769170535501,0,0,0.769583617218004,0,0,0.218559560503957,0,0,0,0,0,0.4226557275834,0,0,0,0.0999411559249289,0,0,0,0,0,0.286679166302903,0,0.135982980381829,10.4724165681691,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0.517164979309476,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | |||
|short_description=p1@GNG8 | |||
}} |
Revision as of 00:05, 21 January 2014
Short description: | p1@GNG8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GNG8_5end |
Coexpression cluster: | C150_merkel_carcinoid_nonsmall_gastrointestinal_argyrophil_pineal_small |
Association with transcript: | -228bp_to_ENST00000300873, NM_033258, uc010xyd.1_5end |
EntrezGene: | GNG8 |
HGNC: | 19664 |
UniProt: | Q9UK08 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 1.31e-34 | 2 |
keratinocyte | 1.72e-14 | 5 |
stratified squamous epithelial cell | 3.08e-12 | 6 |
keratin accumulating cell | 3.08e-12 | 6 |
stratified epithelial cell | 3.08e-12 | 6 |
keratinizing barrier epithelial cell | 3.08e-12 | 6 |
epithelial fate stem cell | 3.08e-12 | 6 |
stratified epithelial stem cell | 3.08e-12 | 6 |
surface ectodermal cell | 3.08e-12 | 6 |
neuron associated cell | 1.57e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 1.57e-08 | 17 |
epidermal cell | 1.83e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 1.70e-17 | 1 |
cranial nerve | 1.70e-17 | 1 |
nerve trunk | 1.70e-17 | 1 |
nerve connecting eye with brain | 1.70e-17 | 1 |
nerve | 1.70e-17 | 1 |
retinal neural layer | 1.70e-17 | 1 |
presumptive neural retina | 1.70e-17 | 1 |
retina | 8.35e-12 | 6 |
photoreceptor array | 8.35e-12 | 6 |
posterior segment of eyeball | 8.35e-12 | 6 |
nervous system | 7.00e-11 | 89 |
pineal body | 1.57e-09 | 2 |
regional part of epithalamus | 1.57e-09 | 2 |
secretory circumventricular organ | 1.57e-09 | 2 |
circumventricular organ | 1.57e-09 | 2 |
epithalamus | 1.57e-09 | 2 |
ecto-epithelium | 1.58e-09 | 104 |
neural tissue | 2.02e-09 | 2 |
multi cell component structure | 2.02e-09 | 2 |
neuron projection bundle | 2.02e-09 | 2 |
pre-chordal neural plate | 2.26e-09 | 61 |
ectoderm-derived structure | 1.11e-08 | 171 |
ectoderm | 1.11e-08 | 171 |
presumptive ectoderm | 1.11e-08 | 171 |
brain | 2.61e-08 | 68 |
future brain | 2.61e-08 | 68 |
peripheral nervous system | 3.68e-08 | 8 |
neocortex | 9.73e-08 | 20 |
regional part of cerebral cortex | 4.13e-07 | 22 |
central nervous system | 5.75e-07 | 81 |
duodenum | 6.14e-07 | 2 |
neural plate | 6.16e-07 | 82 |
presumptive neural plate | 6.16e-07 | 82 |