FFCP PHASE1:Hg19::chr19:3572758..3572795,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=10362 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5002 | |||
|TSSclassifier=strong | |||
|UniProt=C9J8X5 | |||
|association_with_transcript=0bp_to_ENST00000416526_5end | |||
|coexpression_cluster_id=C88 | |||
|description=CAGE_peak_7_at_HMG20B_5end | |||
|id=chr19:3572758..3572795,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000148;1.10e-24;10!CL:0002567;1.69e-21;3!CL:0000147;1.72e-17;14!CL:0000710;4.42e-12;20!CL:0000075;8.42e-09;27!CL:0002566;2.52e-08;1!CL:0002581;5.77e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,7.40e-25,10;CL:0000541,7.40e-25,10;CL:0002567,8.52e-22,3;CL:0000147,1.30e-17,14;CL:0000710,3.65e-12,20;CL:0000333,4.17e-09,41;CL:0000075,7.33e-09,27;CL:0002566,2.52e-08,1;CL:0002581,3.11e-08,1;CL:0002077,6.47e-07,34 | |||
|ontology_enrichment_development_v019=UBERON:0005425;5.77e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!7.18e-15!57;UBERON:0005068!7.18e-15!57;UBERON:0006241!7.18e-15!57;UBERON:0007135!7.18e-15!57;UBERON:0003080!4.79e-14!42;UBERON:0005743!7.15e-14!86;UBERON:0000073!8.39e-14!94;UBERON:0001016!8.39e-14!94;UBERON:0002780!1.84e-13!41;UBERON:0001890!1.84e-13!41;UBERON:0006240!1.84e-13!41;UBERON:0001017!3.97e-13!82;UBERON:0000955!4.38e-13!69;UBERON:0006238!4.38e-13!69;UBERON:0002616!5.93e-13!59;UBERON:0002346!5.00e-12!90;UBERON:0003075!1.79e-11!86;UBERON:0007284!1.79e-11!86;UBERON:0001893!4.44e-11!34;UBERON:0003056!1.04e-10!61;UBERON:0002791!1.21e-10!33;UBERON:0002020!1.25e-10!34;UBERON:0003528!1.25e-10!34;UBERON:0001869!1.65e-10!32;UBERON:0007023!2.22e-09!115;UBERON:0000956!2.44e-09!25;UBERON:0000203!2.44e-09!25;UBERON:0000033!4.56e-08!123;UBERON:0001950!5.38e-08!20;UBERON:0000153!6.89e-08!129;UBERON:0007811!6.89e-08!129;UBERON:0000924!7.47e-08!173;UBERON:0006601!7.47e-08!173;UBERON:0002619!8.97e-08!22;UBERON:0004121!2.14e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0000007;3.08e-14;2!UBERON:0002902;5.77e-08;1!UBERON:0000941;5.77e-08;1!UBERON:0001785;5.77e-08;1!UBERON:0002464;5.77e-08;1!UBERON:0004904;5.77e-08;1!UBERON:0001021;5.77e-08;1!UBERON:0009899;5.77e-08;1!UBERON:0003296;1.48e-07;4!UBERON:0010133;1.48e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000007,3.09e-14,2;UBERON:0002902,3.34e-08,1;UBERON:0009899,3.34e-08,1;UBERON:0000941,3.58e-08,1;UBERON:0001785,3.58e-08,1;UBERON:0002464,3.58e-08,1;UBERON:0004904,3.58e-08,1;UBERON:0001021,3.58e-08,1;UBERON:0003902,3.58e-08,1;UBERON:0005425,3.58e-08,1;UBERON:0003296,1.49e-07,4;UBERON:0010133,1.49e-07,4;UBERON:0003056,3.09e-07,61 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0.446961094427288,0,0,0,0,0,0,0.436882744260345,0,0.37129905888014,0.331397375727916,0,0.602694528023977,0,0.487932798790507,0.246242116153576,0.408001382488506,0.313454721478088,1.14494394852423,0.410623275218653,0.627713197974014,0.0764134057479513,0,0,0,0,0,0,0.30120591877825,0,0.0774672005803016,0.284338464974843,0.293600439334847,0,0.200544447470142,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0.344745680736619,0,0,0.188242339542605,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0.22465726229299,0,0,0,0.19891667719909,0,0,0,0,0.426730222566507,0,0,0,0,1.1384259382189,0.587237189370939,0,0,0,0.263384084775077,0,0.393010762749165,0,0,0.651844533267181,0.473447805734733,0,0,0.294605907474837,0.443067789167242,0.270803863765016,0.128091319725675,0,0,0,0,0,0.267540828089713,0,0.113309342697566,0.383220493601921,0,0.253019692019503,0,0.651083453856419,0,0,0.255973222308837,0,0.236777252044017,0,0,0.267440195783507,0,0,0,0.12786256184353,0,0,0.434539556882471,0,0,0.189069634328136,0,0.087834785693126,1.24430121722827,0,0,0,0.174129737299267,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0.24406205754817,0.367663080345869,0,0.267899184852239,0.673588117878509,0.225222960966644,0,0,0.183201743930407,0,0,0.436094052142534,0,0.12663051166458,0,0,0,0,0,0.24666754841716,0,0,0,0.302714855289863,0,0.468642863667593,0,0.570471821544449,0,0.587172493218824,0,0.421352420106746,0.408308342509787,0.368502951935304,0.309977343527296,0,0.247266929278557,1.82032272387605,0,0.505008341862199,0.125118519871964,0.277064115484183,0,0,0,0.113432183160021,0.179389635688862,0,0.211931901159562,0,0.103052529238439,0,0,0.168776332241266,0.0974370051611986,0,0.0920498986422993,0,0.355009592516614,0,0.169560592310488,0,0,0,0.243947412259191,0.265059536642971,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0.354920400119532,0.168584690078102,0,0.330881918197182,0,0,0.269662616320329,1.17732879075208,0.769494313892781,0.738155454624648,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.100528972411631,0.185176890317059,0,1.03993478527958,0,0,0,0,0,0,0,0,0.246217006087397,0,0.148631162288728,0,0,0.283550194484773,0.358234090811393,0,0,0.492663237895943,0.088048434013226,0,0.144119953416961,0,2.53991577168676,6.49380323449072,8.20522130470329,1.71072446022705,5.03854714246285,0.300343057843917,4.85904935471983,0.224262168690721,0,0.1466765716419,0,3.57656445851882,0,0,1.04007436911366,0,0,0.532844358032199,0.142977993658148,0,0,0,0,0.791951872933429,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0.128343036279748,0.254094624222463,0,0,0.335032530668698,0.637938751653163,0,0,0,0.24538298343828,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0.260650843404249,0,0.686286847621712,0,0,0,0.606255142892519,0,0.30239029332968,0,0,0,0,0,0,1.48418066444991,0.154209693802656,0,0.246381468041427,0,0.348631135379878,0.120859449591622,0,0.0920809889358963,0,0.364182336013434,0.131124414959424,0.451199612907412,0.0770153371044148,0,0,0.211103257785751,0,0.340187410553031,0.215915916102139,0,0.270946437543853,0.501689773854853,0.764628819135115,0,0.895499018888713,0,0,0.769350375349168,0,0.325378394664303,0,0.183138929636687,0.082509499920588,0,0,0,0.580024309752732,0.154048617114644,0,0,0,0.290033387828457,0.170453254832202,0.178064071293475,0.165284915360978,0.192190067365106,0.127612712494584,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0.255897791311334,0,0.318203247925937,0,0,0,0.117812402345686,0.202182481573316,0,0,0,0,0,0.545999645631943,0,0,0.551365343546124,0,0,0,0.655894752046633,0,0,0.281695602532241,0,0.0982490410131212,0,0.354761064070598,0.211107635297664,0,1.13841952129715,0,0.0962221127255121,0,0,0.188287601553558,0.43050537267123,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0.185803175125719,0,0.0711418433484141,0.478278818186467,0,0.383010740264733,0,0,0,0.228234679033192,0,0,0.677167111206413,0.1605880751037,0,0,0,0,0.223676107892416,0,0.390776190804081,0,0,0,0.33307196799782,0,0,0.146508179271894,0.485442086998054,0.222886768554957,0,0,0,0,0.994147647766298,0.844016498463076,0.111308705022906,0.329607748453519,0.211125408127993,0.597743964753209,0.276283915531148,0,0,0.123084805461069,0.311039587661807,0.269605053441981,0,0,0.0986434056369336,0,0,0.969332746095218,0.463840490809256,0,0.260427761085233,0.174919999992391,0.724999575434793,0,0,0,0,0,0.347249989866585,0,0.60298219312704,0,0.552896299656123,0,0.87754158861589,0.32681539055697,0,0.692552326534174,0.113942055847001,0,0.0897576444097721,0.108647371922008,0,0.0915975934018623,0,1.02193298195737,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0,0,0,0,0.611030144933625,0,0.247127877893006,0.104421949505455,0.741412462787447,0,0,0.182454789215666,0,0,0.394584402849391,0,0.61214552326098,0.063186579628488,0,0.103688191397247,0,0.330991955875499,0,1.19472429772959,0,0.138674673013139,0.173559738335131,0,0.522355239482415,0.34945333648406,0,0.677294319023596,0.365446585430928,0.4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| |||
|short_description=p7@HMG20B | |||
}} |
Revision as of 20:32, 20 January 2014
Short description: | p7@HMG20B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_HMG20B_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | 0bp_to_ENST00000416526_5end |
EntrezGene: | HMG20B |
HGNC: | 5002 |
UniProt: | C9J8X5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 7.40e-25 | 10 |
melanoblast | 7.40e-25 | 10 |
light melanocyte | 8.52e-22 | 3 |
pigment cell | 1.30e-17 | 14 |
neurecto-epithelial cell | 3.65e-12 | 20 |
migratory neural crest cell | 4.17e-09 | 41 |
columnar/cuboidal epithelial cell | 7.33e-09 | 27 |
dark melanocyte | 2.52e-08 | 1 |
perirenal preadipocyte | 3.11e-08 | 1 |
ecto-epithelial cell | 6.47e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
pituitary gland | 3.09e-14 | 2 |
occipital pole | 3.34e-08 | 1 |
pole of cerebral hemisphere | 3.34e-08 | 1 |
cranial nerve II | 3.58e-08 | 1 |
cranial nerve | 3.58e-08 | 1 |
nerve trunk | 3.58e-08 | 1 |
nerve connecting eye with brain | 3.58e-08 | 1 |
nerve | 3.58e-08 | 1 |
retinal neural layer | 3.58e-08 | 1 |
presumptive neural retina | 3.58e-08 | 1 |
gland of diencephalon | 1.49e-07 | 4 |
neuroendocrine gland | 1.49e-07 | 4 |
pre-chordal neural plate | 3.09e-07 | 61 |