FFCP PHASE1:Hg19::chr19:572587..572605,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=682 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1116 | |||
|TSSclassifier=strong | |||
|UniProt=P35613,Q54A51 | |||
|association_with_transcript=50bp_to_ENST00000333511,ENST00000353555,NM_001728,NM_198589,uc002loz.2,uc002lpa.2,uc002lpb.2,uc010drr.2_5end | |||
|description=CAGE_peak_1_at_BSG_5end | |||
|id=chr19:572587..572605,+ | |||
|ontology_enrichment_celltype=CL:0002321!2.14e-20!248;CL:0000220!6.18e-20!246;CL:0000066!7.08e-18!254;CL:0000325!1.57e-09!39;CL:0000055!1.03e-08!180;CL:0000222!1.47e-08!119;CL:0000075!3.14e-08!27;CL:0002077!5.99e-08!33;CL:0000147!5.96e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000075;3.11e-08;27!CL:0002077;1.91e-07;34!CL:0000147;5.98e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.73e-20,250;CL:0000066,8.33e-18,253;CL:0000222,1.30e-08,121;CL:0000075,3.14e-08,27;CL:0002077,3.66e-08,34;CL:0000147,5.96e-07,14 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!2.47e-15!659;UBERON:0000119!8.11e-14!312;UBERON:0000475!1.17e-13!365;UBERON:0000483!2.57e-13!309;UBERON:0001009!3.87e-13!113;UBERON:0000481!5.69e-12!347;UBERON:0004535!7.87e-12!110;UBERON:0003914!4.31e-11!118;UBERON:0000480!2.46e-10!626;UBERON:0000467!2.60e-10!625;UBERON:0002049!6.04e-10!79;UBERON:0007798!6.04e-10!79;UBERON:0002104!4.09e-09!21;UBERON:0000477!5.84e-09!286;UBERON:0004872!5.89e-09!84;UBERON:0005085!7.61e-09!29;UBERON:0000922!8.32e-09!612;UBERON:0000970!8.63e-09!20;UBERON:0000019!1.72e-08!19;UBERON:0000047!1.72e-08!19;UBERON:0004088!1.72e-08!19;UBERON:0003072!1.72e-08!19;UBERON:0003071!1.72e-08!19;UBERON:0004128!1.72e-08!19;UBERON:0000064!1.76e-08!219;UBERON:0001032!2.91e-08!24;UBERON:0004456!2.91e-08!24;UBERON:0002100!3.78e-08!216;UBERON:0004111!6.11e-08!241;UBERON:0001456!6.12e-08!21;UBERON:0000020!6.15e-08!23;UBERON:0000923!7.52e-08!604;UBERON:0005291!7.52e-08!604;UBERON:0006598!7.52e-08!604;UBERON:0002532!7.52e-08!604;UBERON:0002050!8.13e-08!605;UBERON:0005423!8.13e-08!605;UBERON:0000055!1.27e-07!69;UBERON:0001637!1.79e-07!42;UBERON:0003509!1.79e-07!42;UBERON:0004572!1.79e-07!42;UBERON:0003104!2.22e-07!238;UBERON:0009142!2.22e-07!238;UBERON:0000025!4.02e-07!194;UBERON:0003103!5.25e-07!69;UBERON:0001981!5.30e-07!60;UBERON:0007500!5.30e-07!60;UBERON:0004537!5.30e-07!60;UBERON:0006965!5.30e-07!60;UBERON:0005256!6.24e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0002104;4.11e-09;21!UBERON:0000970;8.65e-09;20!UBERON:0000019;1.71e-08;19!UBERON:0000047;1.71e-08;19!UBERON:0004088;1.71e-08;19!UBERON:0010230;1.71e-08;19!UBERON:0001032;2.91e-08;24!UBERON:0004456;2.91e-08;24!UBERON:0001456;6.12e-08;21!UBERON:0000020;6.13e-08;23!UBERON:0010371;1.77e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,6.16e-15,309;UBERON:0000483,2.04e-14,306;UBERON:0001009,2.89e-13,112;UBERON:0004535,6.01e-12,109;UBERON:0003914,4.77e-11,117;UBERON:0002049,4.42e-10,78;UBERON:0007798,4.42e-10,78;UBERON:0005085,2.22e-09,31;UBERON:0000970,4.09e-09,21;UBERON:0002104,4.09e-09,21;UBERON:0004872,4.51e-09,83;UBERON:0000019,8.16e-09,20;UBERON:0000047,8.16e-09,20;UBERON:0010312,8.16e-09,20;UBERON:0004088,8.16e-09,20;UBERON:0010230,8.16e-09,20;UBERON:0003072,8.16e-09,20;UBERON:0004128,8.16e-09,20;UBERON:0003071,8.16e-09,20;UBERON:0002100,2.67e-08,199;UBERON:0001456,2.90e-08,22;UBERON:0000020,2.91e-08,24;UBERON:0001032,2.91e-08,24;UBERON:0004456,2.91e-08,24;UBERON:0004111,3.61e-08,240;UBERON:0000922,5.83e-08,592;UBERON:0000055,9.72e-08,68;UBERON:0001637,1.79e-07,42;UBERON:0003509,1.79e-07,42;UBERON:0004572,1.79e-07,42;UBERON:0003104,3.49e-07,160;UBERON:0009142,3.49e-07,160;UBERON:0000025,3.71e-07,192;UBERON:0007500,4.00e-07,59;UBERON:0001981,4.00e-07,59;UBERON:0004537,4.00e-07,59;UBERON:0006965,4.00e-07,59;UBERON:0003103,5.71e-07,68 | |||
|phase1_expression=283.599950041339,382.597636193187,329.833305584572,275.201570471109,385.280463396322,219.829308073293,531.929744153452,815.550356594039,860.606644918468,387.768151799381,764.790080097781,144.171305605914,152.193546437818,365.605806643978,300.57741978522,335.490248079436,291.101457035581,314.03333886657,317.64425201262,478.940915918705,473.485604377911,550.426490915522,192.923055326332,225.021554819822,216.43551066144,145.567537949847,152.0502916613,144.749126835856,99.9145263196216,53.3522863355126,119.672863323327,465.227139586337,506.628355385017,508.7815179895,90.0168870743105,98.807616578758,137.405005608709,86.4232837309729,39.7078005990881,70.5285329826518,118.22737039868,170.368068325983,108.696889541627,60.1948708547398,82.3769557241605,72.0474661727814,60.6639786323837,87.5787601486489,68.1354015969228,71.3477132958933,85.3015152741905,91.0456585071053,69.9833731895336,64.5484683583826,77.1930973587748,66.6377881980821,85.6925311181636,101.799738453623,64.5837012902604,97.8833532582086,88.2285233602677,62.0120444351026,86.168300092545,73.3106570916234,69.3600080322316,73.7600792098482,74.738669879469,76.6308429033067,89.6950619682746,92.5224478443797,72.6479403160043,89.1231879089907,78.7991344727802,92.5298154046305,72.9232748880099,90.36287621411,138.164216310189,88.7545436693302,75.7017513343247,85.7888358661158,69.4219203424825,68.6817218155024,28.1593991138116,38.7758413996113,33.8013516468151,37.1255293632861,32.031678962881,31.0366317575421,35.6964231303826,26.7135051269902,9.67662047486062,22.3150131960957,12.9972897562578,70.0508041468837,54.369330609209,159.874139458472,21.0479454021801,19.2575273747091,30.4290218519274,64.3668007254111,31.6144598634583,30.3006595670229,13.6378709885538,84.3377158620764,40.6556152315275,48.0728551246458,35.7461100169821,73.1401435633605,63.3389022616607,64.1307827954337,65.2186041974602,66.075103547592,25.9501485533606,18.4603171381902,17.7710390468461,75.6906409219742,43.3039157770171,42.6098032398461,30.6153827343598,48.7405083915868,36.4606734159594,43.7207940446252,41.5587328654653,41.595648625186,44.9750615588445,48.3025594169794,54.1944477967891,35.4827868075529,24.6044980120827,22.5926070057166,548.565449206414,259.561232705307,421.562866398119,309.391914441189,376.003432976917,393.258298978636,150.309043992658,242.344165410713,378.990082010748,456.097370580494,372.068152196082,383.244774906307,946.803454272317,487.952326704309,263.207936253948,263.80655200839,251.024629459617,78.4634153964575,66.3514096504948,68.7196377459695,388.182981587175,341.513134257131,340.891972578658,343.707228689798,459.351882649847,353.251565851047,306.177625976428,322.504115443322,308.449349749378,244.680767930974,343.210578176993,279.019862798694,265.29545655486,270.232364054214,540.364679237134,175.920464719637,143.923327853375,116.440270819755,335.763436050284,382.554060805956,324.450288500751,108.059942297572,23.2668158488995,974.234112486422,253.455695364612,280.866474872038,370.480887915386,919.311369499948,241.174499894883,316.222166480261,376.823954925859,574.9820553604,234.341909656024,159.228014386371,135.346455777944,703.357966265996,499.544526524159,331.799147476656,349.931446126789,293.222516273847,284.998633812285,132.583548968811,117.681630555632,116.995521982973,236.818838655676,159.316109553363,211.30122250444,228.096548598154,197.813543422845,438.697776454129,697.778215703568,171.534500119193,132.125156984794,173.165072177614,194.906063671092,217.299847221505,231.667086833972,293.449057834974,316.263927719464,377.996578208864,311.539894704556,550.367070218794,251.345118812552,314.836739935759,363.486220415595,479.324783565196,228.782088118494,257.230015954753,266.392406670814,401.205513024291,563.755232916384,224.677179047638,258.579903273494,466.531699536199,310.38508523237,396.937560018381,347.625062469347,351.336415820257,384.137175126628,330.575104444016,331.2972771997,275.192928743176,397.381812117733,490.149594902979,279.032541132011,186.675907068856,352.277187054758,319.310053307539,320.479495838471,338.379485956409,319.521639005745,340.327691672338,328.619807468869,379.684963779023,359.085281179383,384.362409789444,276.808295484243,367.433447365028,535.04621473082,571.863887289758,65.912618107352,76.6605229008548,116.385611616237,95.7974925729792,295.295240942016,770.854171671275,474.011482679854,783.440220205608,282.184825559448,391.186180794788,392.924816204252,311.980435583874,557.118980217555,619.184292971885,769.026947244632,258.849040835605,275.013394470507,207.757534240181,339.787891122488,318.498366137198,180.969499474237,256.702678857744,172.858041741791,446.173049777058,291.281010296822,303.256933001465,249.95783686365,269.998928879471,482.678793069001,71.9288327328077,136.298975852474,88.9437615669912,69.4658175469754,97.5854010385917,431.785681186749,740.293568731942,800.595164444621,521.770960369251,325.860324376832,505.777709409157,306.40593577998,408.493540270149,285.117885016965,332.369111340545,347.740915388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| |||
|short_description=p1@BSG | |||
}} |
Revision as of 20:05, 20 January 2014
Short description: | p1@BSG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BSG_5end |
Coexpression cluster: | NA |
Association with transcript: | 50bp_to_ENST00000333511, ENST00000353555, NM_001728, NM_198589, uc002loz.2, uc002lpa.2, uc002lpb.2, uc010drr.2_5end |
EntrezGene: | BSG |
HGNC: | 1116 |
UniProt: | P35613Q54A51 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.73e-20 | 250 |
epithelial cell | 8.33e-18 | 253 |
mesodermal cell | 1.30e-08 | 121 |
columnar/cuboidal epithelial cell | 3.14e-08 | 27 |
ecto-epithelial cell | 3.66e-08 | 34 |
pigment cell | 5.96e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
cell layer | 6.16e-15 | 309 |
epithelium | 2.04e-14 | 306 |
circulatory system | 2.89e-13 | 112 |
cardiovascular system | 6.01e-12 | 109 |
epithelial tube | 4.77e-11 | 117 |
vasculature | 4.42e-10 | 78 |
vascular system | 4.42e-10 | 78 |
ectodermal placode | 2.22e-09 | 31 |
eye | 4.09e-09 | 21 |
visual system | 4.09e-09 | 21 |
splanchnic layer of lateral plate mesoderm | 4.51e-09 | 83 |
camera-type eye | 8.16e-09 | 20 |
simple eye | 8.16e-09 | 20 |
immature eye | 8.16e-09 | 20 |
ocular region | 8.16e-09 | 20 |
eyeball of camera-type eye | 8.16e-09 | 20 |
optic cup | 8.16e-09 | 20 |
optic vesicle | 8.16e-09 | 20 |
eye primordium | 8.16e-09 | 20 |
trunk | 2.67e-08 | 199 |
face | 2.90e-08 | 22 |
sense organ | 2.91e-08 | 24 |
sensory system | 2.91e-08 | 24 |
entire sense organ system | 2.91e-08 | 24 |
anatomical conduit | 3.61e-08 | 240 |
embryo | 5.83e-08 | 592 |
vessel | 9.72e-08 | 68 |
artery | 1.79e-07 | 42 |
arterial blood vessel | 1.79e-07 | 42 |
arterial system | 1.79e-07 | 42 |
mesenchyme | 3.49e-07 | 160 |
entire embryonic mesenchyme | 3.49e-07 | 160 |
tube | 3.71e-07 | 192 |
epithelial tube open at both ends | 4.00e-07 | 59 |
blood vessel | 4.00e-07 | 59 |
blood vasculature | 4.00e-07 | 59 |
vascular cord | 4.00e-07 | 59 |
compound organ | 5.71e-07 | 68 |