FFCP PHASE1:Hg19::chr18:67715323..67715368,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25914 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=18654 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-23bp_to_AK129866_5end | |||
|coexpression_cluster_id=C268 | |||
|description=CAGE_peak_2_at_RTTN_5end | |||
|id=chr18:67715323..67715368,- | |||
|ontology_enrichment_celltype=CL:0000055!2.98e-21!180;CL:0000057!2.00e-12!75;CL:0000220!6.23e-12!246;CL:0002620!1.31e-11!23;CL:0002321!1.41e-11!248;CL:0000144!3.23e-11!625;CL:0002371!1.38e-10!591;CL:0000548!1.56e-10!679;CL:0000004!1.56e-10!679;CL:0000255!1.56e-10!679;CL:0000680!3.38e-10!57;CL:0000056!3.38e-10!57;CL:0000355!3.38e-10!57;CL:0000012!3.64e-10!682;CL:0002077!5.07e-09!33;CL:0000359!5.09e-09!32;CL:0000187!1.55e-08!54;CL:0002076!1.88e-08!43;CL:0002159!2.56e-08!13;CL:0000393!4.41e-07!60;CL:0000211!4.41e-07!60;CL:0002368!5.66e-07!13;CL:0000183!6.25e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002620;5.69e-16;23!CL:0002159;3.14e-13;14!CL:0002077;2.18e-11;34!CL:0002368;1.47e-10;13!CL:0002076;3.67e-10;42!CL:0000154;8.53e-08;6!CL:0000362;1.23e-07;9!CL:0000622;3.63e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,7.92e-16,23;CL:0002159,2.66e-13,14;CL:0002077,3.97e-13,34;CL:0002321,1.21e-12,250;CL:0002076,1.58e-12,42;CL:0002368,1.42e-10,13;CL:0000066,6.27e-10,253;CL:0000057,7.71e-09,76;CL:0000223,6.35e-08,58;CL:0000154,7.23e-08,6;CL:0000076,1.01e-07,63;CL:0000362,1.26e-07,9;CL:0000622,3.42e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!9.47e-18!82;UBERON:0003102!3.35e-17!95;UBERON:0000914!4.05e-17!83;UBERON:0002329!4.05e-17!83;UBERON:0003077!4.05e-17!83;UBERON:0003059!4.05e-17!83;UBERON:0007282!4.05e-17!83;UBERON:0009618!4.05e-17!83;UBERON:0007285!4.05e-17!83;UBERON:0002097!3.60e-13!40;UBERON:0002199!4.14e-13!45;UBERON:0002416!4.14e-13!45;UBERON:0004290!9.12e-13!70;UBERON:0001134!4.10e-10!61;UBERON:0002036!4.10e-10!61;UBERON:0003082!4.10e-10!61;UBERON:0001444!5.39e-10!48;UBERON:0002385!2.18e-09!63;UBERON:0001015!2.18e-09!63;UBERON:0000383!2.18e-09!63;UBERON:0000475!2.35e-09!365;UBERON:0000165!2.64e-08!28;UBERON:0000930!2.64e-08!28;UBERON:0004573!4.53e-07!33;UBERON:0004571!4.53e-07!33;UBERON:0001637!5.30e-07!42;UBERON:0003509!5.30e-07!42;UBERON:0004572!5.30e-07!42;UBERON:0005256!7.12e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;2.06e-15;41!UBERON:0002199;3.43e-13;46!UBERON:0002416;3.43e-13;46!UBERON:0003102;1.60e-11;50!UBERON:0000486;2.46e-10;12!UBERON:0003729;8.93e-09;13!UBERON:0010371;5.16e-08;31!UBERON:0000365;1.58e-07;5!UBERON:0000161;1.80e-07;19!UBERON:0000166;1.80e-07;19!UBERON:0001003;3.18e-07;15!UBERON:0007376;3.18e-07;15!UBERON:0004573;6.29e-07;33!UBERON:0004571;6.29e-07;33!UBERON:0000165;6.46e-07;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,6.53e-24,99;UBERON:0002097,7.44e-21,41;UBERON:0002199,6.67e-19,46;UBERON:0002416,6.67e-19,46;UBERON:0000486,2.55e-12,83;UBERON:0003729,8.66e-09,13;UBERON:0000365,1.57e-07,5;UBERON:0004573,2.19e-07,33;UBERON:0004571,2.19e-07,33;UBERON:0001003,3.60e-07,15;UBERON:0007376,3.60e-07,15;UBERON:0007383,3.60e-07,15;UBERON:0000033,8.62e-07,56;UBERON:0002329,9.47e-07,71;UBERON:0003059,9.47e-07,71;UBERON:0007282,9.47e-07,71;UBERON:0004290,9.47e-07,71;UBERON:0009618,9.47e-07,71 | |||
|phase1_expression=0,0.856402095563933,0,0,0,0,0,2.52687949370732,0,0,0,0,0,0.495065411840187,0.331397375727916,1.34465029290355,1.20538905604795,0.730310090387373,0.975865597581014,0.246242116153576,0.204000691244253,0,0,0,0,0,0,0,0,0,0.154816123316076,23.9049518364521,12.6506485886865,27.7315507625091,0.852139206383318,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,4.01070328508712,1.59331170856906,5.5670016293577,1.94653948121054,0.378139268656271,0,0.087834785693126,0.327447688744282,2.91436230634034,2.96627554227544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,6.10531672999548,0,8.1043527465331,6.75286822147416,11.1866282092037,2.83734705758686,0,4.2699598291882,0.49333509683432,0,0.134710672069688,0,0,0,0,1.24864030732128,1.1409436430889,2.09228152772521,1.87895197830024,0.647491777472526,1.54495887372473,3.87892925384297,1.35117749042945,2.47981874821837,0,0.247266929278557,0,0.718618141816238,1.68336113954066,0.375355559615893,2.49357703935765,0.877955241761676,0.30648779579902,0.45071417671979,0.113432183160021,1.61450672119976,2.13557388818567,3.39091041855299,7.50227740211006,6.59536187126009,3.60696756063881,5.21127197728451,7.08860595413318,6.43084234063911,2.01947019395292,4.23429533754577,4.36444353410792,4.9701342952326,3.42557133973977,1.18692414617341,58.3647776553156,62.4588616153011,42.4470801175726,0,0,0,0,0,0,1.56449532329816,1.28648187638577,0,6.03678306441573,3.60939740834793,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,1.3725424823882,18.3282976632405,32.5965084447097,39.8094730750058,52.2198830694107,0,0,1.44331342025273,2.20267769452646,0.587043471179108,0.144366447761074,0,0,0,0,0,0,0,35.6188569149753,84.1590462276286,50.8972599100167,36.6294357854649,31.3884653595079,18.7857512790953,0,0,0,0,0,2.15892840593375,5.34783795781589,2.34434894420094,1.71072446022705,12.1336441389922,7.20823338825402,9.43227227680908,0,0,0,10.6002806921378,0,0.845302752556,0,0,0,0,0,0,0,0,0.65147236858747,0.355391948742546,0.791951872933429,2.41151501647669,1.74306691720059,1.09970290300263,0,0,0,0,0,8.5582143024431,11.5825045334063,7.3971476118138,21.6663765520274,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0.271265023699736,0.207970861530807,0,0,0,0.601892199455438,0,1.03473071292505,0,0.368738337083406,1.91143951829782,0,0,0,0,0,0,0,0.30239029332968,0.496215615637554,1.68808170616869,0.841980283299221,0,0.511707249066704,0,0,0.462629081407967,0.710246901252508,0.657017248110473,0,0.232420756919918,0,35.0886323030749,13.5359053735768,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769350375349168,0,0.976135183992909,0.103041011647722,0,0,33.307401203778,19.5018073810956,1.6068392984416,6.86362099874066,0.462145851343933,0.15350367472613,0.827019434907183,0.966782203814463,0.725083469571143,0.170453254832202,3.38321735457602,42.3129383324104,15.1830153218434,59.5951367349708,4.95673126192195,8.36721988735114,5.66662224295152,3.485186350803,6.16067160352178,0,6.95946393660058,3.15051172476664,3.72124705529177,0,0,0.38126038784765,0,0.42793898803392,0,2.35484592059769,0.359744915166629,0,0,1.41527737101321,1.58510321173008,0.421258456238981,0,1.21856744815642,0,0,0.141405431953713,0,0.551365343546124,1.32687795048244,0.438450885253763,0,0.655894752046633,0.405820753925408,4.02770547529675,2.25356482025793,0.573645408816206,0.589494246078727,0.35667105148125,0,1.05553817648832,1.64647446479951,0,0,52.056162984502,22.7902773682168,25.0449265181042,0,9.04061282609583,5.05414427002877,4.87773168890343,85.6868282771959,0,0,0,0,0,0,0,0,0.427296284509893,0,2.45040215981032,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0.111443384277478,0,0,0.296964680832639,0,0,0,43.6330123689791,0,0,0,0,0,0,0,11.5084647434869,0,0,0,0,0,0,0,0,0,0,0,0,1.93448862085349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07643550786903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0.832048038078832,0,3.72371110174635,16.8894860765981,0.17472666824203,0.171986032471617,0,0,0.0821154570532092,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,1.14580212005842,0,0.599037001496973,1.28767814440971,2.90122894674434,0.134366944973453,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0.2249738915515,0,0,0,0.630445658393585,0.0524545881349981,0,0,0.767660789277781,0,1.98627591109629,0,1.08599920350743,0.864221491201268,1.63293680054705,1.19730191562487,0,1.36310417428337,0,0.293104467356165,0,0,0,0,0,0.106787412567695,0.157204305099666,0,0,0,0,3.19170628885091,0,0,0,0,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,7.99874610957482,1.21319294033318,0,0,0,0,1.79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| |||
|short_description=p2@RTTN | |||
}} |
Revision as of 19:46, 20 January 2014
Short description: | p2@RTTN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RTTN_5end |
Coexpression cluster: | C268_Mallassezderived_Urothelial_Gingival_Small_Bronchial_Tracheal_Prostate |
Association with transcript: | -23bp_to_AK129866_5end |
EntrezGene: | RTTN |
HGNC: | 18654 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 7.92e-16 | 23 |
general ecto-epithelial cell | 2.66e-13 | 14 |
ecto-epithelial cell | 3.97e-13 | 34 |
embryonic cell | 1.21e-12 | 250 |
endo-epithelial cell | 1.58e-12 | 42 |
respiratory epithelial cell | 1.42e-10 | 13 |
epithelial cell | 6.27e-10 | 253 |
fibroblast | 7.71e-09 | 76 |
endodermal cell | 6.35e-08 | 58 |
protein secreting cell | 7.23e-08 | 6 |
squamous epithelial cell | 1.01e-07 | 63 |
epidermal cell | 1.26e-07 | 9 |
acinar cell | 3.42e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
surface structure | 6.53e-24 | 99 |
skin of body | 7.44e-21 | 41 |
integument | 6.67e-19 | 46 |
integumental system | 6.67e-19 | 46 |
multilaminar epithelium | 2.55e-12 | 83 |
mouth mucosa | 8.66e-09 | 13 |
urothelium | 1.57e-07 | 5 |
systemic artery | 2.19e-07 | 33 |
systemic arterial system | 2.19e-07 | 33 |
skin epidermis | 3.60e-07 | 15 |
outer epithelium | 3.60e-07 | 15 |
enveloping layer of ectoderm | 3.60e-07 | 15 |
head | 8.62e-07 | 56 |
somite | 9.47e-07 | 71 |
presomitic mesoderm | 9.47e-07 | 71 |
presumptive segmental plate | 9.47e-07 | 71 |
dermomyotome | 9.47e-07 | 71 |
trunk paraxial mesoderm | 9.47e-07 | 71 |