FFCP PHASE1:Hg19::chr16:3627360..3627373,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=197358 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29889 | |||
|TSSclassifier=strong | |||
|UniProt=Q7RTR2,C3VPR7 | |||
|association_with_transcript=18bp_to_ENST00000301749,NM_178844,uc010btn.2_5end | |||
|coexpression_cluster_id=C57 | |||
|description=CAGE_peak_2_at_NLRC3_5end | |||
|id=chr16:3627360..3627373,- | |||
|ontology_enrichment_celltype=CL:0000037!6.21e-33!172;CL:0000566!6.21e-33!172;CL:0000988!3.45e-32!182;CL:0000542!1.71e-31!53;CL:0000051!1.71e-31!53;CL:0000838!1.10e-30!52;CL:0002032!1.28e-27!165;CL:0000837!1.28e-27!165;CL:0000084!1.96e-25!25;CL:0000827!1.96e-25!25;CL:0000791!1.30e-22!18;CL:0000789!1.30e-22!18;CL:0002420!1.30e-22!18;CL:0002419!1.30e-22!18;CL:0000790!1.30e-22!18;CL:0000738!6.62e-22!140;CL:0002087!1.05e-19!119;CL:0002031!4.22e-16!124;CL:0000625!4.23e-15!11;CL:0000236!3.30e-08!14;CL:0000624!4.72e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.32e-41;18!CL:0000789;1.32e-41;18!CL:0002419;1.32e-41;18!CL:0000084;9.80e-32;25!CL:0000625;2.75e-27;11!CL:0000542;6.24e-14;53!CL:0000624;8.46e-14;6!CL:0000623;2.23e-09;3!CL:0000226;3.64e-08;3!CL:0000842;3.64e-08;3!CL:0000767;4.94e-08;3!CL:0000898;6.46e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.22e-41,18;CL:0000789,1.22e-41,18;CL:0002420,1.22e-41,18;CL:0002419,1.22e-41,18;CL:0000790,1.22e-41,18;CL:0000084,1.22e-31,25;CL:0000827,1.22e-31,25;CL:0000625,2.72e-27,11;CL:0000838,1.24e-25,52;CL:0000542,5.22e-25,53;CL:0000051,5.22e-25,53;CL:0000037,7.37e-20,168;CL:0000988,3.14e-18,177;CL:0002032,1.03e-15,161;CL:0000837,1.03e-15,161;CL:0000624,6.89e-14,6;CL:0000738,1.14e-13,136;CL:0002087,3.03e-12,115;CL:0002031,1.75e-09,120;CL:0000623,1.96e-09,3;CL:0000825,1.96e-09,3;CL:0000226,3.43e-08,3;CL:0000842,3.43e-08,3;CL:0000767,3.98e-08,3;CL:0000898,7.50e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000790;1.32e-41;18!CL:0000051;6.24e-14;53 | |||
|ontology_enrichment_disease=DOID:2531!3.33e-13!51;DOID:0060083!3.33e-13!51;DOID:1240!3.70e-12!39;DOID:8692!3.78e-08!31 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.48e-14!15;UBERON:0000179!1.48e-14!15;UBERON:0000463!1.48e-14!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.49e-21;15!UBERON:0000179;8.49e-21;15!UBERON:0000463;8.49e-21;15!UBERON:0002390;6.11e-18;32!UBERON:0002193;1.09e-10;42!UBERON:0004177;2.27e-07;5!UBERON:0005057;2.27e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.95e-21,15;UBERON:0000179,5.95e-21,15;UBERON:0000463,5.95e-21,15;UBERON:0004177,4.06e-11,7;UBERON:0005057,4.06e-11,7;UBERON:0002370,1.43e-09,4;UBERON:0005058,1.43e-09,4;UBERON:0009113,1.43e-09,4;UBERON:0003295,1.43e-09,4;UBERON:0005562,1.43e-09,4;UBERON:0002390,9.69e-07,98;UBERON:0003061,9.69e-07,98 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75354993794233,4.22212337906934,1.70297735647684,0,0,0,0.387336002901508,0.284338464974843,1.76160263600908,1.66198622559563,0.802177789880567,2.17010870715852,0.671746422719773,0.971680998056939,0.257575567634187,0.436194716338694,0.377875943688809,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0.545812300115692,0,0,0.320929027076094,0.639337125799041,0,0.199463657621632,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0.889509253863555,0.853460445133014,0.400395987036012,1.72425731986345,1.32208974556972,0,0.569212969109448,1.17447437874188,0.764546456250458,2.64342657158052,2.24203425192614,0.263384084775077,1.180258620683,1.96505381374582,2.87842098599313,4.34684888015763,1.30368906653436,0.946895611469467,5.84480185223734,4.34500781852177,5.00830042707223,4.2091439970888,4.60366568400527,4.22701355094728,4.1618991219161,5.42645085192131,4.97430032014527,6.0858648004361,1.77943875794473,2.1403266247177,5.22677619024884,5.55215779218074,1.53288197440768,4.12352934579156,2.53019692019503,3.18565414324097,5.85975108470777,4.75226022224187,2.55977702432214,3.83959833463255,1.24930726552346,4.02521328474829,5.74789597844733,6.45141578319144,5.34880391567015,4.92402973201517,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.261958150995425,0,0,0,0,0,0.476981248610684,1.14398982156026,0.371457501329565,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53316637465883,0.949265659568129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4763109092493,0,0,0,0,0,0.590789906681404,0.882926198829301,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,1.49682337822484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12961773587702,6.5020150866636,7.11570997036407,5.90377966886842,0,0,0,0,0,0,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48121631347465,2.80428461064202,3.62873696531711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.188287601553558,0,0,0,0,1.01489521846434,1.52927441428475,2.84823593587081,2.62054953003568,1.64544909234478,1.94541993357815,3.7802200606668,3.17250070517708,0,0,0,0.557409525377156,0,0.284567373393656,0.478278818186467,1.59663497146253,3.63860203251497,4.65681881992542,0,1.96558024679421,1.14117339516596,0.626719583092093,0,2.03150133361924,0.321176150207399,0.201799707191048,0,0.687010689511529,0,0,0,0.976940477010201,0,0,0.540911356951966,4.9960795199673,4.22961015263549,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,4.14425873296722,0,0,0,0,0,0,0,0,4.7896618469388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0.533034776018635,1.02193298195737,1.41282230755522,0.332423363800313,0,0,0,0,0.476809736941136,0,0,0,0,0.995261931078505,0.265372693510018,0.611030144933625,0,0.247127877893006,0.104421949505455,0,0,0.234264445725339,0.91227394607833,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55493176133945,0,0.525774708558629,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0,0,0.0788057072991982,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0.146552233678082,0,0,0,0,0,0.213574825135389,0.157204305099666,0.828478110694391,0,0,0.365377795142688,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0,0,0,0,0,0.59996218756479,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394308725006267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0.0634158101939068,0.546974809018219,0,0,0,0,0,0,0,0,0.0887023701626388,0.345701962667338,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,0,0.102662806856247,1.1598144313382,0,0,0,0,0,0,0,0.617393264863557,1.09279780251979,0,0,0,0,0,0,0,1.12780701575824,1.09578409555081,0,0,0,0,0.730336388246517,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0.213233981900981,0.476128862927481,1.55013383606415,1.86224142887574,0,0.0636471582781649,0.202117188958219,0,0,1.21233695426258,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0.603821380773079,0 | |||
|short_description=p2@NLRC3 | |||
}} |
Revision as of 02:03, 12 January 2014
Short description: | p2@NLRC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NLRC3_5end |
Coexpression cluster: | C57_Neutrophils_Eosinophils_Whole_CD4_CD8_CD19_Natural |
Association with transcript: | 18bp_to_ENST00000301749, NM_178844, uc010btn.2_5end |
EntrezGene: | NLRC3 |
HGNC: | 29889 |
UniProt: | Q7RTR2C3VPR7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.22e-41 | 18 |
alpha-beta T cell | 1.22e-41 | 18 |
immature T cell | 1.22e-41 | 18 |
mature T cell | 1.22e-41 | 18 |
immature alpha-beta T cell | 1.22e-41 | 18 |
T cell | 1.22e-31 | 25 |
pro-T cell | 1.22e-31 | 25 |
CD8-positive, alpha-beta T cell | 2.72e-27 | 11 |
lymphoid lineage restricted progenitor cell | 1.24e-25 | 52 |
lymphocyte | 5.22e-25 | 53 |
common lymphoid progenitor | 5.22e-25 | 53 |
hematopoietic stem cell | 7.37e-20 | 168 |
hematopoietic cell | 3.14e-18 | 177 |
hematopoietic oligopotent progenitor cell | 1.03e-15 | 161 |
hematopoietic multipotent progenitor cell | 1.03e-15 | 161 |
CD4-positive, alpha-beta T cell | 6.89e-14 | 6 |
leukocyte | 1.14e-13 | 136 |
nongranular leukocyte | 3.03e-12 | 115 |
hematopoietic lineage restricted progenitor cell | 1.75e-09 | 120 |
natural killer cell | 1.96e-09 | 3 |
pro-NK cell | 1.96e-09 | 3 |
single nucleate cell | 3.43e-08 | 3 |
mononuclear cell | 3.43e-08 | 3 |
basophil | 3.98e-08 | 3 |
naive T cell | 7.50e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 5.95e-21 | 15 |
haemolymphatic fluid | 5.95e-21 | 15 |
organism substance | 5.95e-21 | 15 |
hemopoietic organ | 4.06e-11 | 7 |
immune organ | 4.06e-11 | 7 |
thymus | 1.43e-09 | 4 |
hemolymphoid system gland | 1.43e-09 | 4 |
thymic region | 1.43e-09 | 4 |
pharyngeal gland | 1.43e-09 | 4 |
thymus primordium | 1.43e-09 | 4 |
hematopoietic system | 9.69e-07 | 98 |
blood island | 9.69e-07 | 98 |