FFCP PHASE1:Hg19::chr13:31038224..31038249,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3146 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4983 | |||
|TSSclassifier=strong | |||
|UniProt=Q5T7C4 | |||
|association_with_transcript=134bp_to_ENST00000399489,uc001usv.2_5end | |||
|coexpression_cluster_id=C146 | |||
|description=CAGE_peak_16_at_HMGB1_5end | |||
|id=chr13:31038224..31038249,- | |||
|ontology_enrichment_celltype=CL:0000945!2.27e-21!24;CL:0000826!2.27e-21!24;CL:0000542!4.18e-19!53;CL:0000051!4.18e-19!53;CL:0000838!1.50e-18!52;CL:0000236!7.23e-14!14 | |||
|ontology_enrichment_celltype_v019=CL:0000945;9.02e-65;24!CL:0000236;1.05e-53;13!CL:0000542;1.93e-23;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.04e-64,24;CL:0000826,1.04e-64,24;CL:0000236,1.47e-58,14;CL:0000838,2.04e-34,52;CL:0000542,1.11e-33,53;CL:0000051,1.11e-33,53;CL:0002087,2.26e-14,115;CL:0002031,1.40e-13,120;CL:0000738,1.92e-11,136;CL:0000785,6.11e-11,2;CL:0000955,6.11e-11,2;CL:0000818,6.11e-11,2;CL:0000954,6.11e-11,2;CL:0000816,6.11e-11,2;CL:0000988,9.07e-11,177;CL:0002032,5.81e-09,161;CL:0000837,5.81e-09,161;CL:0000037,2.11e-08,168;CL:0000817,1.44e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000051;1.93e-23;53!CL:0000954;4.51e-11;2!UBERON:0004872;7.30e-07;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060058;1.75e-12;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,2.08e-12,10 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.50e-15!115;UBERON:0000178!1.64e-10!15;UBERON:0000179!1.64e-10!15;UBERON:0000463!1.64e-10!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.05e-14;15!UBERON:0000179;1.05e-14;15!UBERON:0000463;1.05e-14;15!UBERON:0002390;4.03e-12;32!UBERON:0002193;6.94e-08;42!UBERON:0002331;7.46e-08;10!UBERON:0002106;1.22e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,9.82e-15,15;UBERON:0000179,9.82e-15,15;UBERON:0000463,9.82e-15,15;UBERON:0002331,7.75e-08,10;UBERON:0000358,7.75e-08,10;UBERON:0000307,7.75e-08,10;UBERON:0000091,7.75e-08,10;UBERON:0000087,7.75e-08,10;UBERON:0007010,7.75e-08,10;UBERON:0007806,7.75e-08,10;UBERON:0008780,7.75e-08,10;UBERON:0005728,7.75e-08,10;UBERON:0002106,1.03e-07,3;UBERON:0004854,1.03e-07,3;UBERON:0009034,1.03e-07,3;UBERON:0002095,1.03e-07,3;UBERON:0004782,1.03e-07,3;UBERON:0003281,1.03e-07,3;UBERON:0009664,1.03e-07,3;UBERON:0002296,1.03e-07,3;UBERON:0005602,1.03e-07,3;UBERON:0001179,1.03e-07,3;UBERON:0006293,1.03e-07,3;UBERON:0004177,5.83e-07,7;UBERON:0005057,5.83e-07,7 | |||
|phase1_expression=0.54503513781167,0.214100523890983,0.563817616383885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0.125542639594803,0.458480434487708,0.492603536699674,0.550975469195755,0,0,0,0,0,0,0.309868802321207,2.84338464974843,0.293600439334847,0,0,0,0.223915474239924,0.647787332037959,0.257575567634187,0,0,0,0.232429036905685,0,0,0,0,0.236482229888585,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,1.13477044938228,0,0,0,0,0,0,0,0,0.212604299965044,0.209658645508376,0,0.300353785683013,0,0.285012743741249,0,0,3.51992488922645,4.91524750135918,5.33705552318133,5.12076267079809,3.60356388332411,5.17277195959035,5.2883589822789,3.81621501814146,1.1384259382189,2.34894875748376,2.29363936875137,0,0,0.263384084775077,0.196709770113833,0,0,0.334372990781356,0,0,0,0.668462741311041,0.883817722424512,0.443067789167242,0.270803863765016,0.25618263945135,0,0.164437904603676,0,0,1.03800594213442,0.802622484269139,0,0.113309342697566,1.53288197440768,0.34362744548263,0.506039384039006,0.318565414324097,0,0,0.150575119077773,0.76791966692651,0,0,0,0.201606743224732,0.534880391567015,0.579297615531196,0,0.670700859703636,0,0,0,0.144846518960824,0,0.486634870302636,0,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0.238490624305342,0,0.371457501329565,0,0,0.347140501607594,0,0,0.275118041940067,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.132409180813219,0,0,0,0,0,0.311211035399766,0,0.163461903113459,0,0.576175924479999,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0.113432183160021,0.538168907066586,0.213557388818567,0.211931901159562,0.300091096084402,0.103052529238439,0,0,0,0,0.252433774244115,0.368199594569197,0.161646056818812,0.355009592516614,0.403008392910561,0,0.193260853163297,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0,0,0.219500570817251,0,0,0,0,0,0,0,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288239906833923,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0.845302752556,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0,0,0,0.591092280605782,0,0.128343036279748,1.77866236955724,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0.117141414992713,0,0,0,0,0,0.0868836144680828,0,0,0.620304078368662,0,0.213455115606889,0,0,0,0.248107807818777,0,0,0.256278298511402,0,0,0,0,0,0.328508624055237,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.412164046590889,0,0,0,0,0,0.096670718292122,0,0.15350367472613,0.137836572484531,0,0,0,0.178064071293475,0,0,0.127612712494584,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0.0982490410131212,0,0,0.211107635297664,0.329294892959902,0,0,0,0,0,0.564862804660675,0,0,0,0,0.507447609232169,0.764637207142375,0.569647187174163,0.238231775457789,1.23408681925858,1.94541993357815,1.08006287447623,0.79312517629427,0.106824071127473,0,0,0.371606350251437,0.28853842595289,0.0711418433484141,0.159426272728822,0.199579371432817,0,0.635020748171649,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0,0,2.34031106982705,0,0,0.296964680832639,0,0,0.422008249231538,0,0,0,0.19924798825107,1.10513566212459,0,0.20453736500431,4.55413780205957,0,0.179736702294654,0.179021174675609,0,0.493217028184668,2.3948309234694,0,0,0.371072392647405,0,0,0.0874599999961957,0,0,0,0.236387681767936,0,0.291604613383254,0,0.885741385813839,0.482385754501632,0,0.221158519862449,0,0.219385397153973,0,0,0.692552326534174,0,0,0,0,0,0.183195186803725,0,0,0,0.166211681900156,0,0,0,0,0.317873157960757,0,0,0,0,0,0.973033209536731,0,1.18608451472249,1.11207545051853,1.25306339406546,0.134802265961354,0.802577647298789,0,1.094728735294,0,0,0,0,0.30607276163049,0.379119477770928,0.150323419414493,0,0,0.330991955875499,0,0,0,0.138674673013139,0,0,0,0.17472666824203,0,0.0967563312890851,0,0,0.678923115418936,0,0.225980740780532,0,0,0.126621591911757,0,0,1.06726497369676,0,0,0.114536596165916,0.343189995723929,0,0,0,0.135904206073614,0,0,0,0,0.136905378891993,0,0,0.788662062837943,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0.338693328263138,0,0.408610218334727,0,0.137539436597234,0.415440338029185,0,0,0.121499113316049,0.335434687599266,0.236417121897595,0,0,0.179287339332845,0,0,0,0,0,0,0.326587360109409,0,0.082092520749339,0.170388021785422,0,0.146552233678082,0,0.387848869084652,0,0,0,0.640724475406168,0.314408610199332,0.414239055347196,0,47.8220149193025,5.11528913199763,0,0,0.2506898940227,0.306345576763462,0,0.157054096250234,0,0,0.250381861413,0,0.221858103073705,0.0620964029413835,0.415045904808692,0.124980407962107,0,0,0,0,0.144921028610825,0,0.233713309847224,0,0.189403005275089,0,0,0,0,0,0,0,0.449803112163605,0,0,0.265841714557995,0.521745061811734,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0.138258436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| |||
|short_description=p16@HMGB1 | |||
}} |
Revision as of 17:10, 11 January 2014
Short description: | p16@HMGB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_HMGB1_5end |
Coexpression cluster: | C146_lymphangiectasia_lymphoma_gall_lymph_tonsil_gastric_transitionalcell |
Association with transcript: | 134bp_to_ENST00000399489, uc001usv.2_5end |
EntrezGene: | HMGB1 |
HGNC: | 4983 |
UniProt: | Q5T7C4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.04e-64 | 24 |
pro-B cell | 1.04e-64 | 24 |
B cell | 1.47e-58 | 14 |
lymphoid lineage restricted progenitor cell | 2.04e-34 | 52 |
lymphocyte | 1.11e-33 | 53 |
common lymphoid progenitor | 1.11e-33 | 53 |
nongranular leukocyte | 2.26e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 1.40e-13 | 120 |
leukocyte | 1.92e-11 | 136 |
mature B cell | 6.11e-11 | 2 |
pre-B-II cell | 6.11e-11 | 2 |
transitional stage B cell | 6.11e-11 | 2 |
small pre-B-II cell | 6.11e-11 | 2 |
immature B cell | 6.11e-11 | 2 |
hematopoietic cell | 9.07e-11 | 177 |
hematopoietic oligopotent progenitor cell | 5.81e-09 | 161 |
hematopoietic multipotent progenitor cell | 5.81e-09 | 161 |
hematopoietic stem cell | 2.11e-08 | 168 |
precursor B cell | 1.44e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 9.82e-15 | 15 |
haemolymphatic fluid | 9.82e-15 | 15 |
organism substance | 9.82e-15 | 15 |
umbilical cord | 7.75e-08 | 10 |
blastocyst | 7.75e-08 | 10 |
blastula | 7.75e-08 | 10 |
bilaminar disc | 7.75e-08 | 10 |
inner cell mass | 7.75e-08 | 10 |
cleaving embryo | 7.75e-08 | 10 |
connecting stalk | 7.75e-08 | 10 |
inner cell mass derived epiblast | 7.75e-08 | 10 |
extraembryonic mesoderm | 7.75e-08 | 10 |
spleen | 1.03e-07 | 3 |
gastrointestinal system mesentery | 1.03e-07 | 3 |
stomach region | 1.03e-07 | 3 |
mesentery | 1.03e-07 | 3 |
gastrointestinal system serosa | 1.03e-07 | 3 |
mesentery of stomach | 1.03e-07 | 3 |
gut mesentery | 1.03e-07 | 3 |
dorsal mesentery | 1.03e-07 | 3 |
dorsal mesogastrium | 1.03e-07 | 3 |
peritoneal cavity | 1.03e-07 | 3 |
spleen primordium | 1.03e-07 | 3 |
hemopoietic organ | 5.83e-07 | 7 |
immune organ | 5.83e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 2.08e-12 | 10 |