FFCP PHASE1:Hg19::chr12:78334061..78334110,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=89795 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15998 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000551277_5end | |||
|coexpression_cluster_id=C1687 | |||
|description=CAGE_peak_1_at_NAV3_5end | |||
|id=chr12:78334061..78334110,+ | |||
|ontology_enrichment_celltype=CL:0000055!6.37e-40!180;CL:0000222!4.56e-30!119;CL:0000057!7.63e-24!75;CL:0000680!5.63e-20!57;CL:0000056!5.63e-20!57;CL:0000355!5.63e-20!57;CL:0000220!6.04e-20!246;CL:0002321!2.65e-19!248;CL:0000187!2.60e-18!54;CL:0000183!3.92e-17!59;CL:0000548!4.30e-17!679;CL:0000004!4.30e-17!679;CL:0000255!4.30e-17!679;CL:0000012!1.97e-16!682;CL:0000192!3.76e-16!42;CL:0000514!3.76e-16!42;CL:0000393!3.07e-15!60;CL:0000211!3.07e-15!60;CL:0000359!9.02e-14!32;CL:0000144!1.02e-13!625;CL:0002620!2.81e-12!23;CL:0002371!1.72e-11!591;CL:0000076!5.31e-11!62;CL:0000213!2.17e-10!57;CL:0000215!2.17e-10!57;CL:0000003!4.24e-09!722;CL:0000077!1.07e-08!19;CL:0002334!1.63e-08!12;CL:0002139!1.42e-07!24;CL:0002539!9.01e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.70e-15;32!CL:0002620;3.66e-14;23!CL:0000192;4.19e-12;43!CL:0000057;2.20e-11;73!CL:0000187;8.17e-11;55!CL:0000077;4.27e-10;19!CL:0002334;9.37e-10;12!CL:0000393;3.56e-08;61!CL:0000211;3.56e-08;61!CL:0002539;9.31e-08;10!CL:0002139;1.55e-07;24!CL:0002320;3.24e-07;188!CL:0000134;5.11e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.94e-31,121;CL:0000057,2.67e-28,76;CL:0000680,1.38e-21,58;CL:0000056,1.38e-21,58;CL:0000355,1.38e-21,58;CL:0000187,1.17e-19,55;CL:0000192,8.11e-17,43;CL:0000514,8.11e-17,43;CL:0000359,4.67e-16,32;CL:0000393,6.60e-16,61;CL:0000211,6.60e-16,61;CL:0002321,1.94e-15,250;CL:0002620,2.78e-14,23;CL:0000723,6.43e-12,433;CL:0000048,9.37e-12,427;CL:0000034,9.00e-11,441;CL:0000213,1.78e-10,58;CL:0000215,1.78e-10,58;CL:0000077,4.93e-10,19;CL:0002334,8.13e-10,12;CL:0000076,4.27e-09,63;CL:0002539,9.41e-08,10;CL:0002139,1.62e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000514;4.19e-12;43!CL:0000355;5.78e-11;58!CL:0000222;1.44e-07;121 | |||
|ontology_enrichment_disease=DOID:2394!2.23e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;7.63e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,7.19e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!9.89e-22!83;UBERON:0002329!9.89e-22!83;UBERON:0003077!9.89e-22!83;UBERON:0003059!9.89e-22!83;UBERON:0007282!9.89e-22!83;UBERON:0009618!9.89e-22!83;UBERON:0007285!9.89e-22!83;UBERON:0004290!8.94e-21!70;UBERON:0000490!2.45e-20!138;UBERON:0002049!3.12e-19!79;UBERON:0007798!3.12e-19!79;UBERON:0000486!5.83e-19!82;UBERON:0005256!7.27e-19!143;UBERON:0000055!9.86e-19!69;UBERON:0001134!1.14e-18!61;UBERON:0002036!1.14e-18!61;UBERON:0003082!1.14e-18!61;UBERON:0002385!6.38e-18!63;UBERON:0001015!6.38e-18!63;UBERON:0000383!6.38e-18!63;UBERON:0001981!1.38e-17!60;UBERON:0007500!1.38e-17!60;UBERON:0004537!1.38e-17!60;UBERON:0006965!1.38e-17!60;UBERON:0001637!2.83e-17!42;UBERON:0003509!2.83e-17!42;UBERON:0004572!2.83e-17!42;UBERON:0002100!1.45e-16!216;UBERON:0004872!3.39e-16!84;UBERON:0004573!9.59e-15!33;UBERON:0004571!9.59e-15!33;UBERON:0003914!1.07e-14!118;UBERON:0004535!1.30e-13!110;UBERON:0000475!7.02e-13!365;UBERON:0001009!8.87e-13!113;UBERON:0003104!2.81e-11!238;UBERON:0009142!2.81e-11!238;UBERON:0003102!5.34e-11!95;UBERON:0002097!5.63e-11!40;UBERON:0002199!1.04e-10!45;UBERON:0002416!1.04e-10!45;UBERON:0000947!2.97e-10!21;UBERON:0010191!2.97e-10!21;UBERON:0000119!1.95e-09!312;UBERON:0000483!5.88e-09!309;UBERON:0001135!3.42e-07!15;UBERON:0000926!6.82e-07!448;UBERON:0004120!6.82e-07!448;UBERON:0006603!6.82e-07!448;UBERON:0004237!9.01e-07!10;UBERON:0004695!9.01e-07!10;UBERON:0002111!9.01e-07!10;UBERON:0004178!9.01e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.45e-15;33!UBERON:0004571;1.45e-15;33!UBERON:0001637;1.76e-14;42!UBERON:0003509;1.76e-14;42!UBERON:0004572;1.76e-14;42!UBERON:0007500;8.87e-12;56!UBERON:0001981;8.87e-12;56!UBERON:0004537;8.87e-12;56!UBERON:0000947;2.03e-11;21!UBERON:0010191;2.03e-11;21!UBERON:0000055;1.04e-10;65!UBERON:0002385;2.40e-10;31!UBERON:0001015;2.40e-10;31!UBERON:0000383;2.40e-10;31!UBERON:0002097;6.09e-10;41!UBERON:0002199;7.62e-09;46!UBERON:0002416;7.62e-09;46!UBERON:0002049;2.02e-08;75!UBERON:0007798;2.02e-08;75!UBERON:0003914;3.86e-08;74!UBERON:0004237;9.31e-08;10!UBERON:0004695;9.31e-08;10!UBERON:0002111;9.31e-08;10!UBERON:0004178;9.31e-08;10!UBERON:0001135;1.10e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,1.64e-22,71;UBERON:0003059,1.64e-22,71;UBERON:0007282,1.64e-22,71;UBERON:0004290,1.64e-22,71;UBERON:0009618,1.64e-22,71;UBERON:0003077,7.12e-22,72;UBERON:0007285,7.12e-22,72;UBERON:0007524,2.95e-21,73;UBERON:0007503,1.50e-20,78;UBERON:0000490,1.91e-20,148;UBERON:0001134,7.67e-20,62;UBERON:0002036,7.67e-20,62;UBERON:0003082,7.67e-20,62;UBERON:0000486,9.03e-20,83;UBERON:0000055,9.57e-20,68;UBERON:0001637,1.08e-19,42;UBERON:0003509,1.08e-19,42;UBERON:0004572,1.08e-19,42;UBERON:0002385,1.37e-18,64;UBERON:0001015,1.37e-18,64;UBERON:0000383,1.37e-18,64;UBERON:0007500,3.50e-18,59;UBERON:0001981,3.50e-18,59;UBERON:0004537,3.50e-18,59;UBERON:0006965,3.50e-18,59;UBERON:0002049,5.17e-18,78;UBERON:0007798,5.17e-18,78;UBERON:0004872,5.90e-17,83;UBERON:0004573,1.13e-16,33;UBERON:0004571,1.13e-16,33;UBERON:0005256,1.48e-16,122;UBERON:0003914,2.72e-15,117;UBERON:0002100,7.42e-15,199;UBERON:0004535,4.19e-14,109;UBERON:0001009,4.13e-13,112;UBERON:0002097,4.32e-13,41;UBERON:0002199,4.73e-13,46;UBERON:0002416,4.73e-13,46;UBERON:0003104,1.35e-11,160;UBERON:0009142,1.35e-11,160;UBERON:0000947,2.45e-11,21;UBERON:0010191,2.45e-11,21;UBERON:0003102,2.53e-10,99;UBERON:0000926,8.34e-08,315;UBERON:0004120,8.34e-08,315;UBERON:0006603,8.34e-08,315;UBERON:0004237,9.41e-08,10;UBERON:0004695,9.41e-08,10;UBERON:0002111,9.41e-08,10;UBERON:0004178,9.41e-08,10;UBERON:0001135,1.08e-07,15;UBERON:0000119,3.48e-07,309;UBERON:0000483,9.83e-07,306 | |||
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| |||
|short_description=p1@NAV3 | |||
}} |
Revision as of 14:49, 11 January 2014
Short description: | p1@NAV3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NAV3_5end |
Coexpression cluster: | C1687_liposarcoma_basal_Preadipocyte_Fibroblast_mesenchymal_Smooth_leiomyoma |
Association with transcript: | 0bp_to_ENST00000551277_5end |
EntrezGene: | NAV3 |
HGNC: | 15998 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.94e-31 | 121 |
fibroblast | 2.67e-28 | 76 |
muscle precursor cell | 1.38e-21 | 58 |
myoblast | 1.38e-21 | 58 |
multi-potent skeletal muscle stem cell | 1.38e-21 | 58 |
muscle cell | 1.17e-19 | 55 |
smooth muscle cell | 8.11e-17 | 43 |
smooth muscle myoblast | 8.11e-17 | 43 |
vascular associated smooth muscle cell | 4.67e-16 | 32 |
electrically responsive cell | 6.60e-16 | 61 |
electrically active cell | 6.60e-16 | 61 |
embryonic cell | 1.94e-15 | 250 |
skin fibroblast | 2.78e-14 | 23 |
somatic stem cell | 6.43e-12 | 433 |
multi fate stem cell | 9.37e-12 | 427 |
stem cell | 9.00e-11 | 441 |
lining cell | 1.78e-10 | 58 |
barrier cell | 1.78e-10 | 58 |
mesothelial cell | 4.93e-10 | 19 |
preadipocyte | 8.13e-10 | 12 |
squamous epithelial cell | 4.27e-09 | 63 |
aortic smooth muscle cell | 9.41e-08 | 10 |
endothelial cell of vascular tree | 1.62e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 7.19e-10 | 14 |