FFCP PHASE1:Hg19::chr12:58146048..58146118,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1019 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1773 | |||
|TSSclassifier=strong | |||
|UniProt=Q96BE9,B4DNF9,F8VZ51,F8VZZ0,F8VTV8,F8VYH9,F8VYY1 | |||
|association_with_transcript=0bp_to_ENST00000312990,ENST00000540325,ENST00000546489,ENST00000547281,ENST00000550419,ENST00000551888,ENST00000552388,ENST00000553237_5end | |||
|coexpression_cluster_id=C181 | |||
|description=CAGE_peak_1_at_CDK4_5end | |||
|id=chr12:58146048..58146118,- | |||
|ontology_enrichment_celltype=CL:0000012!9.53e-26!682;CL:0000548!3.03e-25!679;CL:0000004!3.03e-25!679;CL:0000255!3.03e-25!679;CL:0000066!1.10e-21!254;CL:0002321!1.78e-20!248;CL:0000220!5.29e-20!246;CL:0000144!1.54e-15!625;CL:0000222!1.21e-11!119;CL:0000003!1.33e-11!722;CL:0000333!1.60e-11!41;CL:0000055!3.80e-11!180;CL:0000213!4.82e-11!57;CL:0000215!4.82e-11!57;CL:0000133!9.06e-11!59;CL:0002371!4.93e-09!591;CL:0000221!5.21e-08!71;CL:0000063!5.44e-08!578;CL:0000115!2.12e-07!35;CL:0002078!4.75e-07!44;CL:0000147!5.11e-07!14;CL:0000076!9.90e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0000147;5.13e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.85e-21,253;CL:0002321,5.08e-21,250;CL:0000222,4.06e-12,121;CL:0000333,1.60e-11,41;CL:0000213,2.27e-11,58;CL:0000215,2.27e-11,58;CL:0000133,9.06e-11,59;CL:0000221,4.29e-08,72;CL:0000115,1.01e-07,36;CL:0002078,2.38e-07,45;CL:0000147,5.11e-07,14;CL:0000076,8.19e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!7.44e-29!239;DOID:162!8.13e-28!235;DOID:0050686!1.98e-15!137;DOID:0050687!9.44e-14!143;DOID:305!1.46e-09!106;DOID:2531!2.22e-08!51;DOID:0060083!2.22e-08!51;DOID:8692!1.81e-07!31;DOID:1240!2.45e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:8692;2.91e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,7.44e-29,239;DOID:162,8.13e-28,235;DOID:0050686,1.98e-15,137;DOID:0050687,9.44e-14,143;DOID:305,1.46e-09,106;DOID:2531,2.22e-08,51;DOID:0060083,2.22e-08,51;DOID:8692,1.81e-07,31;DOID:1240,2.45e-07,39 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=79.7568084997744,62.5173529761671,60.7513481653636,55.0403140942217,72.4076972972206,59.3190196388251,98.7869524856411,73.9112251909392,108.130850074733,96.8191709815945,245.626011126294,104.851858622483,101.550286617955,77.106437894109,63.2968987640319,57.1476374484009,72.9260378909012,77.4128695810616,85.3882397883387,165.474702055203,172.992586175127,206.56666145406,100.755067470132,113.058275110202,105.832445178419,47.6819651867216,52.954880195215,51.2407186352052,7.47392126012918,5.37361157336098,13.4690027284986,80.9090677541456,73.1930382631148,49.9167913725163,145.560869890387,64.9713392467516,150.323424939442,8.30993112797816,5.41470008169383,7.37836960433896,56.4266995084609,60.8920092115682,53.3181425002766,10.3232749533491,15.87078963493,11.4014508758274,9.52959051313307,16.8578834088949,16.1047312865454,5.75384784644301,8.19714260893122,9.93225365532058,10.6871161028352,16.7826017731795,17.6054432572644,9.97684399575805,21.8324920046277,20.4498370845027,7.03992952453076,16.3673803808808,9.59005688698562,6.26717470354761,9.97318288108159,7.6720455095885,7.2552309657146,5.6738522469114,5.60540024096017,9.54744927975624,10.9511412868242,12.8141418376019,16.9511860737343,13.6262725315399,11.076183560431,25.1393790711211,23.1738686961897,25.7880133975302,12.3561494261145,14.2668048199431,9.16135844173357,25.0811214492299,18.8970843339136,15.3437889162293,35.1992488922645,38.7758413996113,43.5859534393142,30.7245760247885,26.8265311314128,35.0598988372235,32.3911987664582,30.5297201451317,14.7995371968457,14.6809297342735,10.3213771593812,74.0159440042545,36.4330565937998,166.458741577849,4.52432471261816,2.75107533924415,4.93443597598822,16.5514630436771,9.45174573237412,14.6768819777767,9.74133642039557,11.8095084298284,10.3112067616193,11.0766947291811,8.12411591295047,18.4451500404972,19.6389614815416,19.7325485524411,22.3843514406537,18.5473974870434,10.2317728581822,7.49114318651197,17.7710390468461,13.7104304664055,6.89796888483458,9.62156847351364,6.57851199250707,15.9282707162048,23.4390043388311,18.0585888445191,11.895434407144,11.2628217815888,21.2382235138988,14.206635122641,17.243687935342,6.04820229674197,5.34880391567015,4.92402973201517,36.5710299470943,112.677744430211,91.6774568418112,67.2276823435293,117.814408999434,75.1753433406675,128.041037475227,68.128881842369,110.227596813303,95.7870997038276,95.1250729056555,30.7800827419625,112.202948794103,101.594937322934,24.6656019177559,19.3284008402187,34.5690697349049,8.58566247499231,8.57992366170192,11.5151825412165,109.716848866421,132.476127646343,96.1579189453036,118.149359862118,117.040342702564,97.1166688048438,122.053060457497,105.950871259425,96.0568909254118,78.6593439996975,93.4564015693221,115.561360069214,105.922932975906,83.0918561581663,99.6474595894564,81.8878508365011,76.1154573202716,67.79211125096,170.18146758713,154.730302509605,131.722053885963,1.31780417436063,0,68.9028602385204,44.2305037008833,84.8424428152684,40.7820276904714,39.8702902840851,81.9283962878205,134.562624034154,101.41154594322,147.260526405044,86.2054568057353,71.9354988852134,78.4617134944602,68.5649147231539,78.9361016537598,194.955431285719,79.6008195917317,125.503800739779,84.2890558312158,84.2005355275794,93.56256184478,88.2031066090121,43.893146819802,107.234359013173,55.7959218349133,92.6642228680002,80.1144850862524,59.1604885259717,164.563554475919,96.9616016375421,83.3289342347281,35.4642067819754,57.5060683353898,64.0559493219951,71.2128399217269,99.2531602650184,20.6298081042191,66.8434627002116,77.3551439232401,31.5095650888622,53.2781576162729,22.930008064061,62.3491468710826,29.8734108067041,38.1953060231899,27.0104138441203,74.3763181029779,54.4747211479396,28.4007674013291,47.1519819705356,92.5800834015262,30.5352147998009,28.092850420856,30.6880917066234,113.801467818912,110.264767243476,153.724586416373,123.252994413275,178.390841569069,126.647143599313,95.4342147211877,54.0322388082024,116.033333936084,59.9034627161253,93.8443326170461,82.578146427811,91.5414867124092,81.9437501603839,89.0072359950419,82.1405504228371,74.9775156391065,90.6066390836305,90.4580954227845,83.8748802143131,155.012645471176,242.618268679961,144.462477977321,191.111324801205,17.7457048750563,34.3989525837169,27.1763357073446,59.1560553215632,96.5459242563441,83.3819558050834,46.31462044244,79.8052448129099,42.3226973852966,56.2011862112275,261.949877469501,114.392826380754,131.341521242999,123.929602918357,57.295442787081,116.503723343187,133.802813134641,107.303341860313,198.341303887778,192.300900309251,52.1980052905282,44.6948146415944,56.1825793451393,47.8042553332563,25.7012656144255,22.4004653642971,63.6761096417251,62.7769307190158,141.851591291128,32.5157737011323,121.066596768186,101.176120383897,96.1280089291133,90.1370974664353,137.980924296883,164.255022990059,235.607068892194,260.030117954512,144.678282233576,150.471871979803,134.624249769002,134.669432298778,139.50722202665,135.015784196369,149.050288268718,296.8548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| |||
|short_description=p1@CDK4 | |||
}} |
Revision as of 14:16, 11 January 2014
Short description: | p1@CDK4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDK4_5end |
Coexpression cluster: | C181_liposarcoma_somatostatinoma_neuroblastoma_mesothelioma_nonsmall_small_Alveolar |
Association with transcript: | 0bp_to_ENST00000312990, ENST00000540325, ENST00000546489, ENST00000547281, ENST00000550419, ENST00000551888, ENST00000552388, ENST00000553237_5end |
EntrezGene: | CDK4 |
HGNC: | 1773 |
UniProt: | Q96BE9B4DNF9F8VZ51F8VZZ0F8VTV8F8VYH9F8VYY1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.85e-21 | 253 |
embryonic cell | 5.08e-21 | 250 |
mesodermal cell | 4.06e-12 | 121 |
migratory neural crest cell | 1.60e-11 | 41 |
lining cell | 2.27e-11 | 58 |
barrier cell | 2.27e-11 | 58 |
neurectodermal cell | 9.06e-11 | 59 |
ectodermal cell | 4.29e-08 | 72 |
endothelial cell | 1.01e-07 | 36 |
meso-epithelial cell | 2.38e-07 | 45 |
pigment cell | 5.11e-07 | 14 |
squamous epithelial cell | 8.19e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 7.44e-29 | 239 |
cancer | 8.13e-28 | 235 |
organ system cancer | 1.98e-15 | 137 |
cell type cancer | 9.44e-14 | 143 |
carcinoma | 1.46e-09 | 106 |
hematologic cancer | 2.22e-08 | 51 |
immune system cancer | 2.22e-08 | 51 |
myeloid leukemia | 1.81e-07 | 31 |
leukemia | 2.45e-07 | 39 |