FFCP PHASE1:Hg19::chr12:57623477..57623531,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6472 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10852 | |||
|TSSclassifier=strong | |||
|UniProt=G3V3C6,G3V2Y4,G3V4W5,G3V2D2,Q8N1A5 | |||
|association_with_transcript=0bp_to_ENST00000553324,ENST00000553950,ENST00000554467,ENST00000555563,ENST00000555634,ENST00000556689,ENST00000557269,ENST00000557487_5end | |||
|description=CAGE_peak_1_at_SHMT2_5end | |||
|id=chr12:57623477..57623531,+ | |||
|ontology_enrichment_celltype=CL:0000548!1.09e-44!679;CL:0000004!1.09e-44!679;CL:0000255!1.09e-44!679;CL:0000012!8.65e-44!682;CL:0000003!4.01e-32!722;CL:0000144!6.65e-27!625;CL:0000066!3.93e-24!254;CL:0002371!1.55e-19!591;CL:0000063!4.51e-18!578;CL:0002321!2.94e-17!248;CL:0000220!9.84e-17!246;CL:0000055!3.27e-12!180;CL:1000449!2.69e-07!16;CL:0000183!8.15e-07!59;CL:0000222!8.89e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:1000449;5.95e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.69e-24,253;CL:0002321,1.40e-17,250;CL:0000222,5.18e-07,121;CL:1000449,5.95e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.88e-18!235;DOID:14566!3.43e-18!239;DOID:0050687!2.90e-09!143;DOID:0050686!2.35e-08!137;DOID:305!6.37e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.88e-18,235;DOID:14566,3.43e-18,239;DOID:0050687,2.90e-09,143;DOID:0050686,2.35e-08,137;DOID:305,6.37e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0003104!4.94e-08!238;UBERON:0009142!4.94e-08!238;UBERON:0004211!2.69e-07!16;UBERON:0001285!2.69e-07!16;UBERON:0007684!2.69e-07!16;UBERON:0003220!2.69e-07!16;UBERON:0004208!2.69e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;5.95e-07;15!UBERON:0004819;5.95e-07;15!UBERON:0001285;5.95e-07;15!UBERON:0007684;5.95e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000490,2.31e-07,148;UBERON:0002100,5.50e-07,199;UBERON:0004211,5.95e-07,15;UBERON:0009773,5.95e-07,15;UBERON:0001231,5.95e-07,15;UBERON:0001285,5.95e-07,15;UBERON:0007684,5.95e-07,15;UBERON:0004208,5.95e-07,15 | |||
|phase1_expression=88.11401394622,86.4966116519572,93.7346787238208,64.0469109460035,81.3469191857664,80.2551442172339,197.573904971282,164.247167090976,132.943484753718,309.624759991901,681.751741109062,178.685042402481,119.750208115718,145.177932022135,94.448252082456,98.1594713819592,104.266153348148,129.995196088952,95.1468957641489,176.186234107884,149.124505299549,310.006719541829,71.5589967827642,118.122628837899,94.1569796961021,225.113893333464,215.185644948308,237.627848785998,44.8435275607751,32.2416694401659,34.8336277461171,246.404888160352,308.13365491015,380.107122451458,287.248379751758,194.203171577818,83.6761252104315,35.4557061460402,34.4936449648644,27.777391451629,36.9460532495875,36.9238779261637,34.7727016306152,31.2606213376064,53.6583840038109,31.5359279544161,36.0265007203811,63.3198547553612,51.1015511976921,52.3600154026314,62.2470516865715,54.8638773341518,37.922024881028,44.538443167284,33.8566216485854,38.2131949271488,53.4896054113378,42.2480150756759,49.2795066717153,72.5299601191972,36.4422161705454,34.9642378197919,45.8766412529753,37.9340027974098,62.3949863051456,98.1576438715672,62.2822248995575,43.7172677546733,58.9275697814828,47.3471681457154,64.1723472791371,92.4376866328787,77.8497473104576,64.0103517525184,65.4821243892334,54.9305651231945,43.8081661471331,54.6643889943083,30.6985870591423,43.0369243049285,53.3096694893561,45.1180459798646,96.7979344537275,117.419801421358,138.763443602715,150.635768565977,158.156414879225,106.329201391579,157.989724595582,125.935095598668,55.2136580036165,61.0726676945776,59.6346235875357,33.0428321447565,48.7642449793936,84.2829071280246,26.3591091952536,32.2268825454315,33.924247334919,131.408585377073,121.894927720963,143.454685137624,144.171779021854,105.505702670259,124.618298861856,136.907946852678,151.920967572174,77.6233397537592,98.4549261028278,92.5785402918697,109.434607043196,113.602809608141,29.0641663797638,20.3331029348182,25.0885257131944,78.4100651467158,28.3583165265422,46.389705140155,36.9408750348474,35.3607609899747,36.4606734159594,37.0676297334866,48.6357634621206,36.3481975678548,38.7285252312272,43.5670143760991,44.3409118337365,16.1285394579786,16.0464117470104,15.3513868115767,99.9608151887243,178.406428681167,229.769023632824,118.913481134522,179.980309918284,166.718343323908,69.1898773934456,98.7868786714351,96.141909055857,88.0265707926379,81.8620202659935,31.893404883693,677.953531512421,357.43620284419,86.9787014994551,83.7564036409475,79.5088603902814,19.3177405687327,18.3038371449641,16.3441300585009,136.94729867566,162.584338475058,148.228994186443,110.800356617106,145.985803801047,179.376963344924,138.981652746979,51.1665183155271,36.6439250567311,59.2455484593466,146.62987142773,145.211972192236,107.143243263646,123.534794996212,135.293705296254,95.0149108942609,89.8117490504679,90.5396303085911,154.849803840542,210.736976424125,132.088457373824,5.27121669744253,11.6334079244498,446.560309393955,66.5942415271727,121.565291197997,89.2437878681095,159.194324515592,109.947198481491,123.349072031308,297.829698085877,148.49386414713,78.4251809207411,123.799107632043,93.3367466777849,198.126872787215,194.17128654976,671.330902203827,124.239710578468,233.893446833224,141.0795544409,188.71723932053,183.887664802197,158.288059153434,105.13939819627,159.316109553363,151.062292078969,100.980242868975,126.600667790621,374.076319756529,502.314081129551,164.464383333123,158.525164677779,65.9412594852355,117.207024775184,117.997801382623,97.5045002303813,131.127603732984,170.061374633041,134.968269733335,130.126187311971,192.058301494017,128.71260901881,200.186699615454,141.448810812008,128.270012503362,142.647775555995,219.869817366624,137.062299078384,135.621041670983,142.003837006646,90.9791446995592,140.226609840773,80.0099932096049,84.0058051419771,63.0970109855808,217.601091735198,183.553729125257,268.291814085718,155.076938302994,354.258474629382,122.632392649479,109.514672630871,99.0591044817043,122.940080003708,115.163246151931,115.500717067134,181.7192448612,183.925896875209,194.977923175737,178.676235826478,199.577570788644,209.272686055987,190.921132354793,192.68947875309,216.612649360818,86.3641881910838,381.457624745373,171.626362725194,241.094286672289,186.329901188091,181.823035085361,129.382989563228,148.773064502737,126.924068576493,195.415735930021,169.673941241735,796.928430596523,237.34890386386,305.356692132831,408.563614859147,276.622652884368,215.053699617657,131.581009646712,162.258815433906,106.686804895434,159.730001838931,103.498258815621,122.481681683688,145.084161394033,33.7317298339734,58.7350705499487,56.0339481828506,77.7990822090249,81.4713321764469,113.703627988394,284.079634013435,260.117374969996,281.402886507265,35.4717531285079,98.0859554907338,41.6729512236952,31.8505097051485,46.7097003677606,119.693530740739,193.286143332489,212.163579450185,171.072446022705,119.074236550449,131.550259335636,103.183342179639,205.312015436355,146.918543196815,184.51912712551,70.194541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| |||
|short_description=p1@SHMT2 | |||
}} |
Revision as of 14:08, 11 January 2014
Short description: | p1@SHMT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SHMT2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000553324, ENST00000553950, ENST00000554467, ENST00000555563, ENST00000555634, ENST00000556689, ENST00000557269, ENST00000557487_5end |
EntrezGene: | SHMT2 |
HGNC: | 10852 |
UniProt: | G3V3C6G3V2Y4G3V4W5G3V2D2Q8N1A5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.69e-24 | 253 |
embryonic cell | 1.40e-17 | 250 |
mesodermal cell | 5.18e-07 | 121 |
epithelial cell of nephron | 5.95e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
unilaminar epithelium | 2.31e-07 | 148 |
trunk | 5.50e-07 | 199 |
nephron epithelium | 5.95e-07 | 15 |
renal tubule | 5.95e-07 | 15 |
nephron tubule | 5.95e-07 | 15 |
nephron | 5.95e-07 | 15 |
uriniferous tubule | 5.95e-07 | 15 |
nephrogenic mesenchyme | 5.95e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.88e-18 | 235 |
disease of cellular proliferation | 3.43e-18 | 239 |
cell type cancer | 2.90e-09 | 143 |
organ system cancer | 2.35e-08 | 137 |
carcinoma | 6.37e-08 | 106 |