FFCP PHASE1:Hg19::chr11:118955583..118955629,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3145 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4982 | |||
|TSSclassifier=strong | |||
|UniProt=P08397,F5H4W5,F5H0P4,G3V1P4,F5H4Y7,G5EA58,F5H4X2,F5H226,Q68Y91 | |||
|association_with_transcript=0bp_to_ENST00000278715,ENST00000442944,ENST00000535793,ENST00000536813,ENST00000537841,ENST00000542044,ENST00000542729,ENST00000542822,ENST00000543821,ENST00000544387,ENST00000545621,ENST00000545901,ENST00000546302,NM_000190,uc001puz.1,uc001pva.1,uc001pvb.1,uc001pvc.1,uc001pvd.1,uc001pve.1,uc009zao.1,uc009zap.1_5end | |||
|description=CAGE_peak_1_at_HMBS_5end | |||
|id=chr11:118955583..118955629,+ | |||
|ontology_enrichment_celltype=CL:0000548!7.35e-27!679;CL:0000004!7.35e-27!679;CL:0000255!7.35e-27!679;CL:0000012!9.33e-27!682;CL:0002321!5.20e-21!248;CL:0000220!1.50e-20!246;CL:0000066!8.78e-17!254;CL:0000055!1.23e-15!180;CL:0000003!5.45e-15!722;CL:0000144!8.11e-15!625;CL:0000183!9.27e-11!59;CL:0002371!1.75e-10!591;CL:0000393!2.93e-10!60;CL:0000211!2.93e-10!60;CL:0000187!2.75e-09!54;CL:0000680!7.35e-09!57;CL:0000056!7.35e-09!57;CL:0000355!7.35e-09!57;CL:0000221!8.68e-08!71;CL:0000222!2.35e-07!119;CL:0000063!3.95e-07!578;CL:0000192!4.25e-07!42;CL:0000514!4.25e-07!42 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.06e-21,250;CL:0000066,9.79e-17,253;CL:0000393,3.05e-10,61;CL:0000211,3.05e-10,61;CL:0000187,2.87e-09,55;CL:0000680,7.52e-09,58;CL:0000056,7.52e-09,58;CL:0000355,7.52e-09,58;CL:0000221,9.10e-08,72;CL:0000222,1.65e-07,121;CL:0000192,4.39e-07,43;CL:0000514,4.39e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.79e-15!235;DOID:14566!2.34e-15!239;DOID:0050687!2.07e-08!143;DOID:305!5.63e-07!106;DOID:2531!6.13e-07!51;DOID:0060083!6.13e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.79e-15,235;DOID:14566,2.33e-15,239;DOID:0050687,2.07e-08,143;DOID:305,5.63e-07,106;DOID:2531,6.13e-07,51;DOID:0060083,6.13e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0003104!2.01e-14!238;UBERON:0009142!2.01e-14!238;UBERON:0002100!2.63e-13!216;UBERON:0005256!1.38e-12!143;UBERON:0004290!2.79e-11!70;UBERON:0000486!1.00e-10!82;UBERON:0000914!3.01e-10!83;UBERON:0002329!3.01e-10!83;UBERON:0003077!3.01e-10!83;UBERON:0003059!3.01e-10!83;UBERON:0007282!3.01e-10!83;UBERON:0009618!3.01e-10!83;UBERON:0007285!3.01e-10!83;UBERON:0001134!2.90e-08!61;UBERON:0002036!2.90e-08!61;UBERON:0003082!2.90e-08!61;UBERON:0000490!4.49e-08!138;UBERON:0002385!1.96e-07!63;UBERON:0001015!1.96e-07!63;UBERON:0000383!1.96e-07!63;UBERON:0000481!4.23e-07!347 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,2.36e-14,199;UBERON:0007503,3.31e-13,78;UBERON:0003104,2.98e-12,160;UBERON:0009142,2.98e-12,160;UBERON:0002329,2.87e-11,71;UBERON:0003059,2.87e-11,71;UBERON:0007282,2.87e-11,71;UBERON:0004290,2.87e-11,71;UBERON:0009618,2.87e-11,71;UBERON:0005256,4.64e-11,122;UBERON:0000486,9.95e-11,83;UBERON:0003077,1.06e-10,72;UBERON:0007285,1.06e-10,72;UBERON:0007524,1.33e-10,73;UBERON:0000490,1.67e-10,148;UBERON:0001134,2.90e-08,62;UBERON:0002036,2.90e-08,62;UBERON:0003082,2.90e-08,62;UBERON:0002385,1.93e-07,64;UBERON:0001015,1.93e-07,64;UBERON:0000383,1.93e-07,64 | |||
|phase1_expression=17.9861595477851,21.6241529129893,15.3640300464609,28.0205235388765,23.6889380046463,20.0637860543085,55.7259731970283,36.6397526587562,30.5587184993811,39.3174298402414,108.856982203699,26.8682887720112,34.289707169699,12.7479343548848,21.2094320465866,18.1527789541979,12.0538905604795,22.6396128020086,15.6138495612962,31.1496276934273,48.1441631336437,39.4952949062391,23.7575869318777,28.0592571399413,28.8748071068046,23.458915564621,23.8912715299342,24.3216314259269,5.50709987588466,3.0706351847777,6.50227717927519,98.3780710192452,71.6870086692235,59.160641626686,36.4095842727418,32.5567542396195,16.7352250420863,8.86392653651004,5.01361118675354,4.77423915574874,4.03047853631864,2.59114932815184,1.80302897343931,1.01778767145695,2.26725566213286,0.970336244751265,0.697287110717054,1.6446715520873,0.619412741790207,1.7261543539329,2.0492856522328,1.6553756092201,1.37898272294647,2.5819387343353,0,0.941211697713023,0.818718450173537,2.02251136000576,0.306083892370903,0.320929027076094,1.91801137739712,1.31940520074686,1.59570926097305,0.426224750532694,1.45104619314292,1.13477044938228,0,2.00998932205395,3.12889751052121,3.69221035998698,1.81619850790011,1.84138817993782,1.89877432464531,15.4216359007718,12.7562579979026,13.4181533125361,13.0301212129934,14.1166279271016,5.14321877430656,13.6806116995799,7.55883373356542,8.21988691940853,7.03984977845291,5.46138611262132,6.22656477704488,5.54749289336459,6.4063357925762,12.0698012390441,5.2883589822789,11.4486450544244,6.83055562931338,4.69789751496751,2.29363936875137,11.8954195721123,3.92355994087075,32.9230105968846,3.73748563216283,2.75107533924415,4.72883447698871,14.8795980897704,6.19252306603822,9.46895611469466,9.74133642039557,9.35847837835458,7.65975359434577,3.98761010250518,2.97884250141517,13.5776798909216,11.1851038901495,14.1416597959161,17.4100511205084,10.4329110864619,6.52460877913066,7.49114318651197,8.36284190439814,14.2769771798933,4.98186641682498,5.15441168223945,2.02415753615602,3.50421955756506,7.1619179924206,8.55406840003537,6.47473012034423,5.24745105733115,2.49861453104692,4.49876778883632,5.74789597844733,4.43534835094411,2.94184215361858,3.47578569318718,21.9426179682566,32.8643421254782,18.0286212199378,19.5177142287666,30.5816125487893,21.7269778441236,19.0868627292264,13.6257763684738,14.5583618432665,31.042115644759,21.0803485663502,6.94189100137877,57.1943602619291,70.4490441290416,14.6046327144608,14.975157407737,16.2208711833015,8.10868122638163,8.57992366170192,7.80060752792086,16.8948046261699,25.8070378531837,13.5384795626962,18.0898541415683,15.1019797035566,17.6075546841643,21.1084916202179,8.0109195342492,4.62496141492723,3.3472061276467,11.6820501961653,6.84244895146661,12.6912269925048,15.4418493745265,17.8231228533987,11.6982644052144,13.247232984944,15.6529957871818,39.8623257411296,21.833110170067,15.2057447462238,0,0,29.6543955456923,8.44852317882041,17.9815326563703,10.3279161034311,15.4891775204359,29.4374757224636,30.2765904076846,43.767088249179,20.7200740670414,9.02512002659322,21.6884182032198,21.74043311409,15.8925299027178,13.25204626304,71.468036709308,32.7768080671837,44.496802080467,33.028158401948,40.0451640375238,50.8281045315933,41.1520863637588,17.148950385411,37.9558040493363,14.7755867081345,16.6320400019487,21.2649559179559,39.1369385633351,56.7708332034828,23.5670559535693,26.9004817724723,14.6843981206617,23.7047915275652,18.3892677479412,19.6811857167642,27.6774526910451,10.9427677770206,12.1727711626583,13.9875054765311,21.3064678219926,11.1296731577514,15.4584324027377,19.3561530584853,14.0084355760251,12.6668106709558,16.6606291001116,11.5982872289297,9.5371173523099,16.3304412557643,15.5158231270566,27.9774977312305,12.5619554556143,12.8190676677692,18.3554941048962,26.224346817863,29.6866681040127,29.6294554317272,23.5310594884891,33.0540314647073,65.3309472745736,37.5478877591558,28.302601280487,37.2964287651697,13.9310378409594,18.7688665234092,39.9876984134672,38.2687246477291,40.489853020425,38.3823025108731,37.2573849398015,44.3696057737751,39.7752359072485,39.2442930250692,41.5526929502102,16.2394200017423,44.8773676171027,26.3407367252096,39.6923520740963,36.7589600983309,29.4848165003288,17.7236972004421,45.470699239709,27.9183755492868,18.1861878916437,23.0475599358114,48.3327539007764,37.5978356819499,21.2953423864618,50.17447901779,66.555826257893,23.0930147240437,15.6506046716354,10.0971477042807,12.4155145074523,18.5194205030644,13.5080448086565,53.7338990612307,52.3676558877872,6.89407617044712,11.7002132569619,11.8904929830983,39.3682102744463,9.23901705093727,14.7446101132082,22.6583062438206,30.80719748248,69.3922649289032,1.47798971368783,4.57851856868775,1.24396869324463,1.8735593944205,1.64115163454294,23.7482124652712,28.2671434913125,30.4765362746122,37.6359381249951,39.9998946615928,27.0308752059526,15.7204537946818,25.3416250620515,31.8250850248294,17.9678800261328,14.3491604491133,21.4593867511129,44.801045885468,13.0309677126587,35.362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| |||
|short_description=p1@HMBS | |||
}} |
Revision as of 10:44, 11 January 2014
Short description: | p1@HMBS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HMBS_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000278715, ENST00000442944, ENST00000535793, ENST00000536813, ENST00000537841, ENST00000542044, ENST00000542729, ENST00000542822, ENST00000543821, ENST00000544387, ENST00000545621, ENST00000545901, ENST00000546302, NM_000190, uc001puz.1, uc001pva.1, uc001pvb.1, uc001pvc.1, uc001pvd.1, uc001pve.1, uc009zao.1, uc009zap.1_5end |
EntrezGene: | HMBS |
HGNC: | 4982 |
UniProt: | P08397F5H4W5F5H0P4G3V1P4F5H4Y7G5EA58F5H4X2F5H226Q68Y91 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.06e-21 | 250 |
epithelial cell | 9.79e-17 | 253 |
electrically responsive cell | 3.05e-10 | 61 |
electrically active cell | 3.05e-10 | 61 |
muscle cell | 2.87e-09 | 55 |
muscle precursor cell | 7.52e-09 | 58 |
myoblast | 7.52e-09 | 58 |
multi-potent skeletal muscle stem cell | 7.52e-09 | 58 |
ectodermal cell | 9.10e-08 | 72 |
mesodermal cell | 1.65e-07 | 121 |
smooth muscle cell | 4.39e-07 | 43 |
smooth muscle myoblast | 4.39e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
trunk | 2.36e-14 | 199 |
epithelial vesicle | 3.31e-13 | 78 |
mesenchyme | 2.98e-12 | 160 |
entire embryonic mesenchyme | 2.98e-12 | 160 |
somite | 2.87e-11 | 71 |
presomitic mesoderm | 2.87e-11 | 71 |
presumptive segmental plate | 2.87e-11 | 71 |
dermomyotome | 2.87e-11 | 71 |
trunk paraxial mesoderm | 2.87e-11 | 71 |
trunk mesenchyme | 4.64e-11 | 122 |
multilaminar epithelium | 9.95e-11 | 83 |
paraxial mesoderm | 1.06e-10 | 72 |
presumptive paraxial mesoderm | 1.06e-10 | 72 |
dense mesenchyme tissue | 1.33e-10 | 73 |
unilaminar epithelium | 1.67e-10 | 148 |
skeletal muscle tissue | 2.90e-08 | 62 |
striated muscle tissue | 2.90e-08 | 62 |
myotome | 2.90e-08 | 62 |
muscle tissue | 1.93e-07 | 64 |
musculature | 1.93e-07 | 64 |
musculature of body | 1.93e-07 | 64 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.79e-15 | 235 |
disease of cellular proliferation | 2.33e-15 | 239 |
cell type cancer | 2.07e-08 | 143 |
carcinoma | 5.63e-07 | 106 |
hematologic cancer | 6.13e-07 | 51 |
immune system cancer | 6.13e-07 | 51 |